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Volumn 75, Issue 2, 2018, Pages 529-542

Development of a Stable Lung Microbiome in Healthy Neonatal Mice

Author keywords

16S rRNA based barcoding; Core microbiome; Delftia; Murine lung microbiome; Rhodococcus

Indexed keywords

BACTERIAL DNA; RIBOSOME DNA;

EID: 85029419010     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-017-1068-x     Document Type: Article
Times cited : (28)

References (56)
  • 1
    • 84858439578 scopus 로고    scopus 로고
    • The human microbiome: at the interface of health and disease
    • COI: 1:CAS:528:DC%2BC38Xjs1Wguro%3D, PID: 22411464
    • Cho I, Blaser MJ (2012) The human microbiome: at the interface of health and disease. Nat Rev Genet 13(4):260–270. https://doi.org/10.1038/nrg3182
    • (2012) Nat Rev Genet , vol.13 , Issue.4 , pp. 260-270
    • Cho, I.1    Blaser, M.J.2
  • 3
    • 85015984059 scopus 로고    scopus 로고
    • Host genetic variation in mucosal immunity pathways influences the upper airway microbiome
    • PID: 28143570
    • Igartua C, Davenport ER, Gilad Y, Nicolae DL, Pinto J, Ober C (2017) Host genetic variation in mucosal immunity pathways influences the upper airway microbiome. Microbiome 5(1):16. https://doi.org/10.1186/s40168-016-0227-5
    • (2017) Microbiome , vol.5 , Issue.1 , pp. 16
    • Igartua, C.1    Davenport, E.R.2    Gilad, Y.3    Nicolae, D.L.4    Pinto, J.5    Ober, C.6
  • 7
    • 84895811657 scopus 로고    scopus 로고
    • Towards an ecology of the lung: new conceptual models of pulmonary microbiology and pneumonia pathogenesis
    • PID: 24621685
    • Dickson RP, Erb-Downward JR, Huffnagle GB (2014) Towards an ecology of the lung: new conceptual models of pulmonary microbiology and pneumonia pathogenesis. Lancet Respir. Med. 2(3):238–246. https://doi.org/10.1016/s2213-2600(14)70028-1
    • (2014) Lancet Respir. Med. , vol.2 , Issue.3 , pp. 238-246
    • Dickson, R.P.1    Erb-Downward, J.R.2    Huffnagle, G.B.3
  • 10
    • 84922479758 scopus 로고    scopus 로고
    • Host-microorganism interactions in lung diseases
    • COI: 1:CAS:528:DC%2BC2cXhvF2js7rF, PID: 25421702
    • Marsland BJ, Gollwitzer ES (2014) Host-microorganism interactions in lung diseases. Nat Rev Immunol 14(12):827–835. https://doi.org/10.1038/nri3769
    • (2014) Nat Rev Immunol , vol.14 , Issue.12 , pp. 827-835
    • Marsland, B.J.1    Gollwitzer, E.S.2
  • 12
    • 84965002935 scopus 로고    scopus 로고
    • How colonization by microbiota in early life shapes the immune system
    • COI: 1:CAS:528:DC%2BC28Xms1KisbY%3D, PID: 27126036
    • Gensollen T, Iyer SS, Kasper DL, Blumberg RS (2016) How colonization by microbiota in early life shapes the immune system. Science 352(6285):539
    • (2016) Science , vol.352 , Issue.6285 , pp. 539
    • Gensollen, T.1    Iyer, S.S.2    Kasper, D.L.3    Blumberg, R.S.4
  • 14
  • 16
    • 84942239416 scopus 로고    scopus 로고
    • Spatial variation in the healthy human lung microbiome and the adapted island model of lung biogeography
    • PID: 25803243
    • Dickson RP, Erb-Downward JR, Freeman CM, McCloskey L, Beck JM, Huffnagle GB, Curtis JL (2015) Spatial variation in the healthy human lung microbiome and the adapted island model of lung biogeography. Ann Am Thorac Soc 12(6):821–830. https://doi.org/10.1513/AnnalsATS.201501-029OC
    • (2015) Ann Am Thorac Soc , vol.12 , Issue.6 , pp. 821-830
    • Dickson, R.P.1    Erb-Downward, J.R.2    Freeman, C.M.3    McCloskey, L.4    Beck, J.M.5    Huffnagle, G.B.6    Curtis, J.L.7
  • 17
    • 84916206478 scopus 로고    scopus 로고
    • Early respiratory microbiota composition determines bacterial succession patterns and respiratory health in children
    • PID: 25329446
    • Biesbroek G, Tsivtsivadze E, Sanders EA, Montijn R, Veenhoven RH, Keijser BJ, Bogaert D (2014) Early respiratory microbiota composition determines bacterial succession patterns and respiratory health in children. Am. J. Respir. Crit. Care Med. 190(11):1283–1292. https://doi.org/10.1164/rccm.201407-1240OC
    • (2014) Am. J. Respir. Crit. Care Med. , vol.190 , Issue.11 , pp. 1283-1292
    • Biesbroek, G.1    Tsivtsivadze, E.2    Sanders, E.A.3    Montijn, R.4    Veenhoven, R.H.5    Keijser, B.J.6    Bogaert, D.7
  • 18
    • 84930958871 scopus 로고    scopus 로고
    • Alterations of the murine gut microbiome with age and allergic airway disease
    • PID: 26090504
    • Vital M, Harkema JR, Rizzo M, Tiedje J, Brandenberger C (2015) Alterations of the murine gut microbiome with age and allergic airway disease. J Immunol Res 2015:892568. https://doi.org/10.1155/2015/892568
    • (2015) J Immunol Res , vol.2015 , pp. 892568
    • Vital, M.1    Harkema, J.R.2    Rizzo, M.3    Tiedje, J.4    Brandenberger, C.5
  • 19
    • 84941247954 scopus 로고    scopus 로고
    • Nested PCR biases in interpreting microbial community structure in 16S rRNA gene sequence datasets
    • PID: 26196512
    • Yu G, Fadrosh D, Goedert JJ, Ravel J, Goldstein AM (2015) Nested PCR biases in interpreting microbial community structure in 16S rRNA gene sequence datasets. PLoS One 10(7):e0132253. https://doi.org/10.1371/journal.pone.0132253
    • (2015) PLoS One , vol.10 , Issue.7
    • Yu, G.1    Fadrosh, D.2    Goedert, J.J.3    Ravel, J.4    Goldstein, A.M.5
  • 20
    • 0031027068 scopus 로고    scopus 로고
    • Diversity and depth-specific distribution of SAR11 cluster rRNA genes from marine planktonic bacteria
    • COI: 1:CAS:528:DyaK2sXhs1Kquw%3D%3D, PID: 8979340
    • Field KG, Gordon D, Wright T, Rappé M, Urback E, Vergin K, Giovannoni SJ (1997) Diversity and depth-specific distribution of SAR11 cluster rRNA genes from marine planktonic bacteria. Appl. Environ. Microbiol. 63(1):63–70
    • (1997) Appl. Environ. Microbiol. , vol.63 , Issue.1 , pp. 63-70
    • Field, K.G.1    Gordon, D.2    Wright, T.3    Rappé, M.4    Urback, E.5    Vergin, K.6    Giovannoni, S.J.7
  • 21
    • 0029796310 scopus 로고    scopus 로고
    • Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis
    • PID: 8824607
    • Nübel U, Engelen B, Felske A, Snaidr J, Wieshuber A, Amann RI, Ludwig W, Backhaus H (1996) Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J. Bacteriol. 178(19):5636–5643
    • (1996) J. Bacteriol. , vol.178 , Issue.19 , pp. 5636-5643
    • Nübel, U.1    Engelen, B.2    Felske, A.3    Snaidr, J.4    Wieshuber, A.5    Amann, R.I.6    Ludwig, W.7    Backhaus, H.8
  • 23
    • 0029097821 scopus 로고
    • Phylogenetic relationships ofThiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments
    • COI: 1:CAS:528:DyaK2MXovFyjsrk%3D, PID: 7545384
    • Muyzer G, Teske A, Wirsen C, Jannasch H (1995) Phylogenetic relationships ofThiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Arch. Microbiol. 164(3):165–172. https://doi.org/10.1007/BF02529967
    • (1995) Arch. Microbiol. , vol.164 , Issue.3 , pp. 165-172
    • Muyzer, G.1    Teske, A.2    Wirsen, C.3    Jannasch, H.4
  • 24
    • 84871808499 scopus 로고    scopus 로고
    • Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
    • COI: 1:CAS:528:DC%2BC3sXhsFagtQ%3D%3D, PID: 22933715
    • Klindworth A, Pruesse E, Schweer T, Peplies J, Quast C, Horn M, Glöckner FO (2013) Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res. 41(1):e1. https://doi.org/10.1093/nar/gks808
    • (2013) Nucleic Acids Res. , vol.41 , Issue.1
    • Klindworth, A.1    Pruesse, E.2    Schweer, T.3    Peplies, J.4    Quast, C.5    Horn, M.6    Glöckner, F.O.7
  • 26
    • 79960557827 scopus 로고    scopus 로고
    • Reproducibility and quantitation of amplicon sequencing-based detection
    • COI: 1:CAS:528:DC%2BC3MXptVynuro%3D, PID: 21346791
    • Zhou J, Wu L, Deng Y, Zhi X, Jiang YH, Tu Q, Xie J, Van Nostrand JD, He Z, Yang Y (2011) Reproducibility and quantitation of amplicon sequencing-based detection. ISME J 5(8):1303–1313. https://doi.org/10.1038/ismej.2011.11
    • (2011) ISME J , vol.5 , Issue.8 , pp. 1303-1313
    • Zhou, J.1    Wu, L.2    Deng, Y.3    Zhi, X.4    Jiang, Y.H.5    Tu, Q.6    Xie, J.7    Van Nostrand, J.D.8    He, Z.9    Yang, Y.10
  • 28
    • 33745012299 scopus 로고    scopus 로고
    • Modularity and community structure in networks
    • COI: 1:CAS:528:DC%2BD28XlvVCitLw%3D, PID: 16723398
    • Newman ME (2006) Modularity and community structure in networks. Proc. Natl. Acad. Sci. U. S. A. 103(23):8577–8582. https://doi.org/10.1073/pnas.0601602103
    • (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , Issue.23 , pp. 8577-8582
    • Newman, M.E.1
  • 29
    • 84935882625 scopus 로고    scopus 로고
    • The microbiome of the human lower airways: a next generation sequencing perspective
    • PID: 26140078
    • Aho VT, Pereira PA, Haahtela T, Pawankar R, Auvinen P, Koskinen K (2015) The microbiome of the human lower airways: a next generation sequencing perspective. World Allergy Organ J 8(1):23. https://doi.org/10.1186/s40413-015-0074-z
    • (2015) World Allergy Organ J , vol.8 , Issue.1 , pp. 23
    • Aho, V.T.1    Pereira, P.A.2    Haahtela, T.3    Pawankar, R.4    Auvinen, P.5    Koskinen, K.6
  • 32
    • 84866146940 scopus 로고    scopus 로고
    • Diversity, stability and resilience of the human gut microbiota
    • COI: 1:CAS:528:DC%2BC38Xhtleru7jO, PID: 22972295
    • Lozupone CA, Stombaugh JI, Gordon JI, Jansson JK, Knight R (2012) Diversity, stability and resilience of the human gut microbiota. Nature 489(7415):220–230
    • (2012) Nature , vol.489 , Issue.7415 , pp. 220-230
    • Lozupone, C.A.1    Stombaugh, J.I.2    Gordon, J.I.3    Jansson, J.K.4    Knight, R.5
  • 34
    • 84915745379 scopus 로고    scopus 로고
    • Environmentally determined differences in the murine lung microbiota and their relation to alveolar architecture
    • PID: 25470730
    • Yun Y, Srinivas G, Kuenzel S, Linnenbrink M, Alnahas S, Bruce KD, Steinhoff U, Baines JF, Schaible UE (2014) Environmentally determined differences in the murine lung microbiota and their relation to alveolar architecture. PLoS One 9(12):e113466. https://doi.org/10.1371/journal.pone.0113466
    • (2014) PLoS One , vol.9 , Issue.12
    • Yun, Y.1    Srinivas, G.2    Kuenzel, S.3    Linnenbrink, M.4    Alnahas, S.5    Bruce, K.D.6    Steinhoff, U.7    Baines, J.F.8    Schaible, U.E.9
  • 43
    • 84987730780 scopus 로고    scopus 로고
    • Differences in Rhodococcus equi infections based on immune status and antibiotic susceptibility of clinical isolates in a case series of 12 patients and cases in the literature
    • PID: 27631004
    • Gundelly P, Suzuki Y, Ribes JA, Thornton A (2016) Differences in Rhodococcus equi infections based on immune status and antibiotic susceptibility of clinical isolates in a case series of 12 patients and cases in the literature. Biomed. Res. Int. 2016:2737295. https://doi.org/10.1155/2016/2737295
    • (2016) Biomed. Res. Int. , vol.2016 , pp. 2737295
    • Gundelly, P.1    Suzuki, Y.2    Ribes, J.A.3    Thornton, A.4
  • 44
    • 0029052101 scopus 로고
    • Cellular and biochemical changes in the aging mouse immune system
    • COI: 1:STN:280:DyaK2Mznt1Sjuw%3D%3D, PID: 7644159
    • Miller RA (1995) Cellular and biochemical changes in the aging mouse immune system. Nutr. Rev. 53(4):S8–S17. https://doi.org/10.1111/j.1753-4887.1995.tb01521.x
    • (1995) Nutr. Rev. , vol.53 , Issue.4 , pp. S8-S17
    • Miller, R.A.1
  • 45
    • 79751525185 scopus 로고    scopus 로고
    • Biodegradation of polycyclic aromatic hydrocarbons by a halotolerant bacterial strain Ochrobactrum sp. VA1
    • COI: 1:CAS:528:DC%2BC3MXhs1ert74%3D, PID: 20934193
    • Arulazhagan P, Vasudevan N (2011) Biodegradation of polycyclic aromatic hydrocarbons by a halotolerant bacterial strain Ochrobactrum sp. VA1. Mar. Pollut. Bull. 62(2):388–394. https://doi.org/10.1016/j.marpolbul.2010.09.020
    • (2011) Mar. Pollut. Bull. , vol.62 , Issue.2 , pp. 388-394
    • Arulazhagan, P.1    Vasudevan, N.2
  • 46
  • 47
    • 71349086975 scopus 로고    scopus 로고
    • Biodegradation of aromatic compounds: current status and opportunities for biomolecular approaches
    • COI: 1:CAS:528:DC%2BD1MXhtlKhtrbN, PID: 19730850
    • Cao B, Nagarajan K, Loh KC (2009) Biodegradation of aromatic compounds: current status and opportunities for biomolecular approaches. Appl. Microbiol. Biotechnol. 85(2):207–228. https://doi.org/10.1007/s00253-009-2192-4
    • (2009) Appl. Microbiol. Biotechnol. , vol.85 , Issue.2 , pp. 207-228
    • Cao, B.1    Nagarajan, K.2    Loh, K.C.3
  • 48
    • 84952803197 scopus 로고    scopus 로고
    • Enzymatic degradation of phenazines can generate energy and protect sensitive organisms from toxicity
    • COI: 1:CAS:528:DC%2BC28XitFSktr3L, PID: 26507234
    • Costa KC, Bergkessel M, Saunders S, Korlach J, Newman DK (2015) Enzymatic degradation of phenazines can generate energy and protect sensitive organisms from toxicity. MBio 6(6):e01520–e01515. https://doi.org/10.1128/mBio.01520-15
    • (2015) MBio , vol.6 , Issue.6 , pp. e1515-e01520
    • Costa, K.C.1    Bergkessel, M.2    Saunders, S.3    Korlach, J.4    Newman, D.K.5
  • 49
    • 84893899717 scopus 로고    scopus 로고
    • A brave new world: the lung microbiota in an era of change
    • Segal LN, Blaser MJ (2014) A brave new world: the lung microbiota in an era of change. Ann Am Thoracic Soc 11(Supplement 1):S21–S27. https://doi.org/10.1513/AnnalsATS.201306-189MG
    • (2014) Ann Am Thoracic Soc , vol.11 , pp. S21-S27
    • Segal, L.N.1    Blaser, M.J.2
  • 50
    • 84943657766 scopus 로고    scopus 로고
    • Early life dynamics of the human gut virome and bacterial microbiome in infants
    • COI: 1:CAS:528:DC%2BC2MXhsV2ltr%2FK, PID: 26366711
    • Lim ES, Zhou Y, Zhao G, Bauer IK, Droit L, Ndao IM, Warner BB, Tarr PI, Wang D, Holtz LR (2015) Early life dynamics of the human gut virome and bacterial microbiome in infants. Nat. Med. 21(10):1228–1234. https://doi.org/10.1038/nm.3950
    • (2015) Nat. Med. , vol.21 , Issue.10 , pp. 1228-1234
    • Lim, E.S.1    Zhou, Y.2    Zhao, G.3    Bauer, I.K.4    Droit, L.5    Ndao, I.M.6    Warner, B.B.7    Tarr, P.I.8    Wang, D.9    Holtz, L.R.10
  • 51
    • 84877116806 scopus 로고    scopus 로고
    • Associations between the human intestinal microbiota, Lactobacillus rhamnosus GG and serum lipids indicated by integrated analysis of high-throughput profiling data
    • PID: 23638368
    • Lahti L, Salonen A, Kekkonen RA, Salojärvi J, Jalanka-Tuovinen J, Palva A, Orešič M, de Vos WM (2013) Associations between the human intestinal microbiota, Lactobacillus rhamnosus GG and serum lipids indicated by integrated analysis of high-throughput profiling data. Peer J 1:e32. https://doi.org/10.7717/peerj.32
    • (2013) Peer J , vol.1
    • Lahti, L.1    Salonen, A.2    Kekkonen, R.A.3    Salojärvi, J.4    Jalanka-Tuovinen, J.5    Palva, A.6    Orešič, M.7    de Vos, W.M.8
  • 53
    • 84952984042 scopus 로고    scopus 로고
    • The microbiome and critical illness
    • PID: 26700442
    • Dickson RP (2016) The microbiome and critical illness. Lancet Respir. Med. 4(1):59–72. https://doi.org/10.1016/s2213-2600(15)00427-0
    • (2016) Lancet Respir. Med. , vol.4 , Issue.1 , pp. 59-72
    • Dickson, R.P.1
  • 54
    • 84938078684 scopus 로고    scopus 로고
    • Microbiome influences on allergy in mice and humans
    • COI: 1:CAS:528:DC%2BC2MXhtFyqu7bI, PID: 26218803
    • Marsland BJ, Salami O (2015) Microbiome influences on allergy in mice and humans. Curr. Opin. Immunol. 36:94–100. https://doi.org/10.1016/j.coi.2015.07.005
    • (2015) Curr. Opin. Immunol. , vol.36 , pp. 94-100
    • Marsland, B.J.1    Salami, O.2
  • 56
    • 84978115999 scopus 로고    scopus 로고
    • The microbiome and innate immunity
    • COI: 1:CAS:528:DC%2BC28XhtFensLzO, PID: 27383981
    • Thaiss CA, Zmora N, Levy M, Elinav E (2016) The microbiome and innate immunity. Nature 535(7610):65–74. https://doi.org/10.1038/nature18847
    • (2016) Nature , vol.535 , Issue.7610 , pp. 65-74
    • Thaiss, C.A.1    Zmora, N.2    Levy, M.3    Elinav, E.4


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