-
1
-
-
37449004386
-
Epidemiology and causes of preterm birth
-
Goldenberg, R. L., Culhane, J. F., Iams, J. D. & Romero, R. Epidemiology and causes of preterm birth. Lancet 371, 75-84, doi:10. 1016/ S0140-6736(08)60074-4 (2008).
-
(2008)
Lancet
, vol.371
, pp. 75-84
-
-
Goldenberg, R.L.1
Culhane, J.F.2
Iams, J.D.3
Romero, R.4
-
2
-
-
84874766374
-
Identification of intracellular bacteria in the basal plate of the human placenta in term and preterm gestations
-
Stout, M. J. et al. Identification of intracellular bacteria in the basal plate of the human placenta in term and preterm gestations. Am J Obstet Gynecol 208(226), e221-227, doi:10. 1016/j. Ajog. 2013. 01. 018 (2013).
-
(2013)
Am J Obstet Gynecol
, vol.208
, Issue.226
, pp. e221-227
-
-
Stout, M.J.1
-
3
-
-
84893770837
-
Intracellular bacteria in placental basal plate localize to extravillous trophoblasts
-
Cao, B. & Mysorekar, I. U. Intracellular bacteria in placental basal plate localize to extravillous trophoblasts. Placenta 35, 139-142, doi:10. 1016/j. placenta. 2013. 12. 007 (2014).
-
(2014)
Placenta
, vol.35
, pp. 139-142
-
-
Cao, B.1
Mysorekar, I.U.2
-
4
-
-
84901358163
-
The placenta harbors a unique microbiome
-
Aagaard, K. et al. The placenta harbors a unique microbiome. Sci Transl Med 6, 237ra265, doi:10. 1126/scitranslmed. 3008599 (2014).
-
(2014)
Sci Transl Med
, vol.6
, pp. 237ra265
-
-
Aagaard, K.1
-
5
-
-
85020636153
-
Contributions of the maternal oral and gut microbiome to placental microbial colonization in overweight and obese pregnant women
-
Gomez-Arango, L. F. et al. Contributions of the maternal oral and gut microbiome to placental microbial colonization in overweight and obese pregnant women. Scientific reports 7, 2860, doi:10. 1038/s41598-017-03066-4 (2017).
-
(2017)
Scientific Reports
, vol.7
, pp. 2860
-
-
Gomez-Arango, L.F.1
-
6
-
-
84961620579
-
Human gut colonisation may be initiated in utero by distinct microbial communities in the placenta and amniotic fluid
-
Collado, M. C., Rautava, S., Aakko, J., Isolauri, E. & Salminen, S. Human gut colonisation may be initiated in utero by distinct microbial communities in the placenta and amniotic fluid. Scientific reports 6, 23129, doi:10. 1038/srep23129 (2016).
-
(2016)
Scientific Reports
, vol.6
, pp. 23129
-
-
Collado, M.C.1
Rautava, S.2
Aakko, J.3
Isolauri, E.4
Salminen, S.5
-
7
-
-
26444484367
-
Isolation of commensal bacteria from umbilical cord blood of healthy neonates born by cesarean section
-
Jimenez, E. et al. Isolation of commensal bacteria from umbilical cord blood of healthy neonates born by cesarean section. Current microbiology 51, 270-274, doi:10. 1007/s00284-005-0020-3 (2005).
-
(2005)
Current Microbiology
, vol.51
, pp. 270-274
-
-
Jimenez, E.1
-
8
-
-
57549114322
-
The anatomy of the normal placenta
-
Huppertz, B. The anatomy of the normal placenta. Journal of clinical pathology 61, 1296-1302, doi:10. 1136/jcp. 2008. 055277 (2008).
-
(2008)
Journal of Clinical Pathology
, vol.61
, pp. 1296-1302
-
-
Huppertz, B.1
-
9
-
-
77649214077
-
Placental syncytiotrophoblast constitutes a major barrier to vertical transmission of Listeria monocytogenes
-
Robbins, J. R., Skrzypczynska, K. M., Zeldovich, V. B., Kapidzic, M. & Bakardjiev, A. I. Placental syncytiotrophoblast constitutes a major barrier to vertical transmission of Listeria monocytogenes. PLoS Pathog 6, e1000732, doi:10. 1371/journal. ppat. 1000732 (2010).
-
(2010)
PLoS Pathog
, vol.6
, pp. e1000732
-
-
Robbins, J.R.1
Skrzypczynska, K.M.2
Zeldovich, V.B.3
Kapidzic, M.4
Bakardjiev, A.I.5
-
10
-
-
84969960228
-
Zika virus infection during pregnancy in mice causes placental damage and fetal demise
-
Miner, J. J. et al. Zika Virus Infection during Pregnancy in Mice Causes Placental Damage and Fetal Demise. Cell 165, 1081-1091, doi:10. 1016/j. cell. 2016. 05. 008 (2016).
-
(2016)
Cell
, vol.165
, pp. 1081-1091
-
-
Miner, J.J.1
-
11
-
-
85019383903
-
ATG16L1 governs placental infection risk and preterm birth in mice and women
-
Cao, B., Macones, C. & Mysorekar, I. U. ATG16L1 governs placental infection risk and preterm birth in mice and women. JCI Insight 1, e86654, doi:10. 1172/jci. insight. 86654 (2016).
-
(2016)
JCI Insight
, vol.1
, pp. e86654
-
-
Cao, B.1
Macones, C.2
Mysorekar, I.U.3
-
13
-
-
84940835683
-
The placental microbiome varies in association with low birth weight in full-term neonates
-
Zheng, J. et al. The Placental Microbiome Varies in Association with Low Birth Weight in Full-Term Neonates. Nutrients 7, 6924-6937, doi:10. 3390/nu7085315 (2015).
-
(2015)
Nutrients
, vol.7
, pp. 6924-6937
-
-
Zheng, J.1
-
14
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso, J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nature methods 7, 335-336, doi:10. 1038/nmeth. f. 303 (2010).
-
(2010)
Nature Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
-
15
-
-
84857122937
-
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
-
McDonald, D. et al. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. The ISME journal 6, 610-618, doi:10. 1038/ismej. 2011. 139 (2012).
-
(2012)
The ISME Journal
, vol.6
, pp. 610-618
-
-
McDonald, D.1
-
16
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar, R. C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26, 2460-2461, doi:10. 1093/ bioinformatics/btq461 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
17
-
-
84884904719
-
UPARSE: Highly accurate OTU sequences from microbial amplicon reads
-
Edgar, R. C. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nature methods 10, 996-998, doi:10. 1038/ nmeth. 2604 (2013).
-
(2013)
Nature Methods
, vol.10
, pp. 996-998
-
-
Edgar, R.C.1
-
18
-
-
84876715756
-
Using QIIME to analyze 16S rRNA gene sequences from microbial communities
-
Kuczynski, J. et al. Using QIIME to analyze 16S rRNA gene sequences from microbial communities. Current protocols in microbiology Chapter 1, Unit 1E 5, doi:10. 1002/9780471729259. mc01e05s27 (2012).
-
(2012)
Current Protocols in Microbiology Chapter 1, Unit 1E 5
-
-
Kuczynski, J.1
-
19
-
-
84996604223
-
Comparison of placenta samples with contamination controls does not provide evidence for a distinct placenta microbiota
-
Lauder, A. P. et al. Comparison of placenta samples with contamination controls does not provide evidence for a distinct placenta microbiota. Microbiome 4, 29, doi:10. 1186/s40168-016-0172-3 (2016).
-
(2016)
Microbiome
, vol.4
, pp. 29
-
-
Lauder, A.P.1
-
20
-
-
84876427223
-
Phyloseq: An R package for reproducible interactive analysis and graphics of microbiome census data
-
McMurdie, P. J. & Holmes, S. phyloseq: An R package for reproducible interactive analysis and graphics of microbiome census data. PloS one 8, e61217, doi:10. 1371/journal. pone. 0061217 (2013).
-
(2013)
PloS One
, vol.8
, pp. e61217
-
-
McMurdie, P.J.1
Holmes, S.2
-
21
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F. et al. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic acids research 25, 3389-3402 (1997).
-
(1997)
Nucleic Acids Research
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
-
22
-
-
84922401094
-
Term and preterm labour are associated with distinct microbial community structures in placental membranes which are independent of mode of delivery
-
Doyle, R. M. et al. Term and preterm labour are associated with distinct microbial community structures in placental membranes which are independent of mode of delivery. Placenta 35, 1099-1101, doi:10. 1016/j. placenta. 2014. 10. 007 (2014).
-
(2014)
Placenta
, vol.35
, pp. 1099-1101
-
-
Doyle, R.M.1
-
23
-
-
84962524929
-
The placental membrane microbiome is altered among subjects with spontaneous preterm birth with and without chorioamnionitis
-
Prince, A. L. et al. The placental membrane microbiome is altered among subjects with spontaneous preterm birth with and without chorioamnionitis. American journal of obstetrics and gynecology 214, 627 e621-627 e616, doi:10. 1016/j. Ajog. 2016. 01. 193 (2016).
-
(2016)
American Journal of Obstetrics and Gynecology
, vol.214
, pp. 621-627
-
-
Prince, A.L.1
-
25
-
-
84924769961
-
The vaginal microbiome during pregnancy and the postpartum period in a European population
-
MacIntyre, D. A. et al. The vaginal microbiome during pregnancy and the postpartum period in a European population. Scientific reports 5, 8988, doi:10. 1038/srep08988 (2015).
-
(2015)
Scientific Reports
, vol.5
, pp. 8988
-
-
MacIntyre, D.A.1
-
26
-
-
84978619185
-
Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer
-
Dominguez-Bello, M. G. et al. Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer. Nat Med 22, 250-253, doi:10. 1038/nm. 4039 (2016).
-
(2016)
Nat Med
, vol.22
, pp. 250-253
-
-
Dominguez-Bello, M.G.1
-
27
-
-
84975068696
-
Antibiotics, birth mode, and diet shape microbiome maturation during early life
-
Bokulich, N. A. et al. Antibiotics, birth mode, and diet shape microbiome maturation during early life. Science translational medicine 8, 343ra382, doi:10. 1126/scitranslmed. Aad7121 (2016).
-
(2016)
Science Translational Medicine
, vol.8
, pp. 343ra382
-
-
Bokulich, N.A.1
-
28
-
-
85012911430
-
Autophagy regulation of physiological and pathological processes in the female reproductive tract
-
Cao, B., Camden, A. J., Parnell, L. A. & Mysorekar, I. U. Autophagy regulation of physiological and pathological processes in the female reproductive tract. Am J Reprod Immunol, doi:10. 1111/aji. 12650 (2017).
-
(2017)
Am J Reprod Immunol
-
-
Cao, B.1
Camden, A.J.2
Parnell, L.A.3
Mysorekar, I.U.4
-
29
-
-
84955613067
-
Characterisation of the human uterine microbiome in non-pregnant women through deep sequencing of the V1-2 region of the 16S rRNA gene
-
Verstraelen, H. et al. Characterisation of the human uterine microbiome in non-pregnant women through deep sequencing of the V1-2 region of the 16S rRNA gene. PeerJ 4, e1602, doi:10. 7717/peerj. 1602 (2016).
-
(2016)
PeerJ
, vol.4
, pp. e1602
-
-
Verstraelen, H.1
-
30
-
-
1842423292
-
Wautersia gen. Nov., a novel genus accommodating the phylogenetic lineage including Ralstonia eutropha and related species, and proposal of Ralstonia [Pseudomonas] syzygii (Roberts et al. 1990) comb. Nov
-
Vaneechoutte, M., Kampfer, P., De Baere, T., Falsen, E. & Verschraegen, G. Wautersia gen. nov., a novel genus accommodating the phylogenetic lineage including Ralstonia eutropha and related species, and proposal of Ralstonia [Pseudomonas] syzygii (Roberts et al. 1990) comb. nov. Int J Syst Evol Microbiol 54, 317-327, doi:10. 1099/ijs. 0. 02754-0 (2004).
-
(2004)
Int J Syst Evol Microbiol
, vol.54
, pp. 317-327
-
-
Vaneechoutte, M.1
Kampfer, P.2
De Baere, T.3
Falsen, E.4
Verschraegen, G.5
-
31
-
-
84922858726
-
The infant microbiome development: Mom matters
-
Mueller, N. T., Bakacs, E., Combellick, J., Grigoryan, Z. & Dominguez-Bello, M. G. The infant microbiome development: mom matters. Trends Mol Med 21, 109-117, doi:10. 1016/j. molmed. 2014. 12. 002 (2015).
-
(2015)
Trends Mol Med
, vol.21
, pp. 109-117
-
-
Mueller, N.T.1
Bakacs, E.2
Combellick, J.3
Grigoryan, Z.4
Dominguez-Bello, M.G.5
-
32
-
-
84891787332
-
Microbiome in parturition and preterm birth
-
Mysorekar, I. U. & Cao, B. Microbiome in parturition and preterm birth. Semin Reprod Med 32, 50-55, doi:10. 1055/s-0033-1361830 (2014).
-
(2014)
Semin Reprod Med
, vol.32
, pp. 50-55
-
-
Mysorekar, I.U.1
Cao, B.2
-
33
-
-
84962605055
-
The maternal microbiota drives early postnatal innate immune development
-
Gomez de Aguero, M. et al. The maternal microbiota drives early postnatal innate immune development. Science 351, 1296-1302, doi:10. 1126/science. Aad2571 (2016).
-
(2016)
Science
, vol.351
, pp. 1296-1302
-
-
Gomez De Aguero, M.1
-
34
-
-
58149314069
-
Bifidobacterium and Lactobacillus DNA in the human placenta
-
Satokari, R., Gronroos, T., Laitinen, K., Salminen, S. & Isolauri, E. Bifidobacterium and Lactobacillus DNA in the human placenta. Lett Appl Microbiol 48, 8-12, doi:10. 1111/j. 1472-765X. 2008. 02475. x (2009).
-
(2009)
Lett Appl Microbiol
, vol.48
, pp. 8-12
-
-
Satokari, R.1
Gronroos, T.2
Laitinen, K.3
Salminen, S.4
Isolauri, E.5
-
35
-
-
84941140948
-
RrnDB: Improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development
-
Stoddard, S. F., Smith, B. J., Hein, R., Roller, B. R. & Schmidt, T. M. rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development. Nucleic acids research 43, D593-598, doi:10. 1093/nar/gku1201 (2015).
-
(2015)
Nucleic Acids Research
, vol.43
, pp. D593-598
-
-
Stoddard, S.F.1
Smith, B.J.2
Hein, R.3
Roller, B.R.4
Schmidt, T.M.5
-
36
-
-
33645827531
-
Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: A comparative genomics approach
-
Chen, S. L. et al. Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: A comparative genomics approach. Proceedings of the National Academy of Sciences of the United States of America 103, 5977-5982, doi:10. 1073/ pnas. 0600938103 (2006).
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, pp. 5977-5982
-
-
Chen, S.L.1
-
37
-
-
84871342461
-
Similar gene estimates from circular and linear standards in quantitative PCR analyses using the prokaryotic 16S rRNA gene as a model
-
Oldham, A. L. & Duncan, K. E. Similar gene estimates from circular and linear standards in quantitative PCR analyses using the prokaryotic 16S rRNA gene as a model. PloS one 7, e51931, doi:10. 1371/journal. pone. 0051931 (2012).
-
(2012)
PloS One
, vol.7
, pp. e51931
-
-
Oldham, A.L.1
Duncan, K.E.2
-
38
-
-
0041810321
-
Classification of Ralstonia pickettii-like isolates from the environment and clinical samples as Ralstonia insidiosa sp. Nov
-
Coenye, T., Goris, J., De Vos, P., Vandamme, P. & LiPuma, J. J. Classification of Ralstonia pickettii-like isolates from the environment and clinical samples as Ralstonia insidiosa sp. nov. Int J Syst Evol Microbiol 53, 1075-1080, doi:10. 1099/ijs. 0. 02555-0 (2003).
-
(2003)
Int J Syst Evol Microbiol
, vol.53
, pp. 1075-1080
-
-
Coenye, T.1
Goris, J.2
De Vos, P.3
Vandamme, P.4
LiPuma, J.J.5
-
39
-
-
33947269742
-
Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities
-
Lozupone, C. A., Hamady, M., Kelley, S. T. & Knight, R. Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities. Applied and environmental microbiology 73, 1576-1585, doi:10. 1128/AEM. 01996-06 (2007).
-
(2007)
Applied and Environmental Microbiology
, vol.73
, pp. 1576-1585
-
-
Lozupone, C.A.1
Hamady, M.2
Kelley, S.T.3
Knight, R.4
-
40
-
-
78751575501
-
UniFrac: An effective distance metric for microbial community comparison
-
Lozupone, C., Lladser, M. E., Knights, D., Stombaugh, J. & Knight, R. UniFrac: An effective distance metric for microbial community comparison. The ISME journal 5, 169-172, doi:10. 1038/ismej. 2010. 133 (2011).
-
(2011)
The ISME Journal
, vol.5
, pp. 169-172
-
-
Lozupone, C.1
Lladser, M.E.2
Knights, D.3
Stombaugh, J.4
Knight, R.5
-
41
-
-
84928535581
-
Estimating bacterial diversity for ecological studies: Methods, metrics, and assumptions
-
Birtel, J., Walser, J. C., Pichon, S., Burgmann, H. & Matthews, B. Estimating bacterial diversity for ecological studies: methods, metrics, and assumptions. PloS one 10, e0125356, doi:10. 1371/journal. pone. 0125356 (2015).
-
(2015)
PloS One
, vol.10
, pp. e0125356
-
-
Birtel, J.1
Walser, J.C.2
Pichon, S.3
Burgmann, H.4
Matthews, B.5
-
42
-
-
85010953137
-
Bioconductor workflow for microbiome data analysis: From raw reads to community analyses
-
Callahan, B. J., Sankaran, K., Fukuyama, J. A., McMurdie, P. J. & Holmes, S. P. Bioconductor workflow for microbiome data analysis: from raw reads to community analyses. F1000Research 5, 1492, doi:10. 12688/f1000research. 8986. 1 (2016).
-
(2016)
F1000Research
, vol.5
, pp. 1492
-
-
Callahan, B.J.1
Sankaran, K.2
Fukuyama, J.A.3
McMurdie, P.J.4
Holmes, S.P.5
|