메뉴 건너뛰기




Volumn 4, Issue , 2016, Pages

Comparison of placenta samples with contamination controls does not provide evidence for a distinct placenta microbiota

Author keywords

16S rRNA gene; Low biomass samples; Microbiome; Placenta; Reagent contamination

Indexed keywords

RNA 16S;

EID: 84996604223     PISSN: None     EISSN: 20492618     Source Type: Journal    
DOI: 10.1186/s40168-016-0172-3     Document Type: Article
Times cited : (416)

References (46)
  • 1
    • 84906089611 scopus 로고    scopus 로고
    • Preterm labor: one syndrome, many causes
    • Romero R, Dey SK, Fisher SJ. Preterm labor: one syndrome, many causes. Science. 2014;345(6198):760-5.
    • (2014) Science. , vol.345 , Issue.6198 , pp. 760-765
    • Romero, R.1    Dey, S.K.2    Fisher, S.J.3
  • 2
    • 84947483899 scopus 로고    scopus 로고
    • Syncytiotrophoblast functions and fetal growth restriction during placental malaria: updates and implication for future interventions
    • Kidima WB. Syncytiotrophoblast functions and fetal growth restriction during placental malaria: updates and implication for future interventions. Biomed Res Int. 2015;2015:451735.
    • (2015) Biomed Res Int. , vol.2015 , pp. 451735
    • Kidima, W.B.1
  • 4
    • 84928825527 scopus 로고    scopus 로고
    • The preterm placental microbiome varies in association with excess maternal gestational weight gain
    • Antony KM, Ma J, Mitchell KB, Racusin DA, Versalovic J, Aagaard K. The preterm placental microbiome varies in association with excess maternal gestational weight gain. Am J Obstet Gynecol. 2015;212(5):653. e651-616.
    • (2015) Am J Obstet Gynecol. , vol.212 , Issue.5
    • Antony, K.M.1    Ma, J.2    Mitchell, K.B.3    Racusin, D.A.4    Versalovic, J.5    Aagaard, K.6
  • 5
    • 84940835683 scopus 로고    scopus 로고
    • The placental microbiome varies in association with low birth weight in full-term neonates
    • Zheng J, Xiao X, Zhang Q, Mao L, Yu M, Xu J. The placental microbiome varies in association with low birth weight in full-term neonates. Nutrients. 2015;7(8):6924-37.
    • (2015) Nutrients. , vol.7 , Issue.8 , pp. 6924-6937
    • Zheng, J.1    Xiao, X.2    Zhang, Q.3    Mao, L.4    Yu, M.5    Xu, J.6
  • 6
    • 84928585458 scopus 로고    scopus 로고
    • Microbiome of the placenta in pre-eclampsia supports the role of bacteria in the multifactorial cause of pre-eclampsia
    • Amarasekara R, Jayasekara RW, Senanayake H, Dissanayake VH. Microbiome of the placenta in pre-eclampsia supports the role of bacteria in the multifactorial cause of pre-eclampsia. J Obstet Gynaecol Res. 2015;41(5):662-9.
    • (2015) J Obstet Gynaecol Res. , vol.41 , Issue.5 , pp. 662-669
    • Amarasekara, R.1    Jayasekara, R.W.2    Senanayake, H.3    Dissanayake, V.H.4
  • 8
    • 84893770837 scopus 로고    scopus 로고
    • Intracellular bacteria in placental basal plate localize to extravillous trophoblasts
    • Cao B, Mysorekar IU. Intracellular bacteria in placental basal plate localize to extravillous trophoblasts. Placenta. 2014;35(2):139-42.
    • (2014) Placenta. , vol.35 , Issue.2 , pp. 139-142
    • Cao, B.1    Mysorekar, I.U.2
  • 10
    • 84924580226 scopus 로고    scopus 로고
    • Tracking down the sources of experimental contamination in microbiome studies
    • Weiss S, Amir A, Hyde ER, Metcalf JL, Song SJ, Knight R. Tracking down the sources of experimental contamination in microbiome studies. Genome Biol. 2014;15(12):564.
    • (2014) Genome Biol. , vol.15 , Issue.12 , pp. 564
    • Weiss, S.1    Amir, A.2    Hyde, E.R.3    Metcalf, J.L.4    Song, S.J.5    Knight, R.6
  • 13
    • 84866126809 scopus 로고    scopus 로고
    • Assessing bacterial populations in the lung by replicate analysis of samples from the upper and lower respiratory tracts
    • Charlson ES, Bittinger K, Chen J, Diamond JM, Li H, Collman RG, Bushman FD. Assessing bacterial populations in the lung by replicate analysis of samples from the upper and lower respiratory tracts. PLoS One. 2012;7(9): e42786.
    • (2012) PLoS One. , vol.7 , Issue.9
    • Charlson, E.S.1    Bittinger, K.2    Chen, J.3    Diamond, J.M.4    Li, H.5    Collman, R.G.6    Bushman, F.D.7
  • 16
    • 40149103278 scopus 로고    scopus 로고
    • Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
    • Hamady M, Walker JJ, Harris JK, Gold NJ, Knight R. Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Methods. 2008;5(3):235-7.
    • (2008) Nat Methods. , vol.5 , Issue.3 , pp. 235-237
    • Hamady, M.1    Walker, J.J.2    Harris, J.K.3    Gold, N.J.4    Knight, R.5
  • 17
    • 56649124715 scopus 로고    scopus 로고
    • The influence of sex, handedness, and washing on the diversity of hand surface bacteria
    • Fierer N, Hamady M, Lauber CL, Knight R. The influence of sex, handedness, and washing on the diversity of hand surface bacteria. Proc Natl Acad Sci U S A. 2008;105(46):17994-9.
    • (2008) Proc Natl Acad Sci U S A. , vol.105 , Issue.46 , pp. 17994-17999
    • Fierer, N.1    Hamady, M.2    Lauber, C.L.3    Knight, R.4
  • 19
    • 84862276328 scopus 로고    scopus 로고
    • Structure, function and diversity of the healthy human microbiome
    • Human Microbiome Project C. Structure, function and diversity of the healthy human microbiome. Nature. 2012;486(7402):207-14.
    • (2012) Nature. , vol.486 , Issue.7402 , pp. 207-214
  • 22
    • 84891590750 scopus 로고    scopus 로고
    • Microbiome assembly across multiple body sites in low-birthweight infants
    • Costello EK, Carlisle EM, Bik EM, Morowitz MJ, Relman DA. Microbiome assembly across multiple body sites in low-birthweight infants. MBio. 2013; 4(6):e00782-00713.
    • (2013) MBio. , vol.4 , Issue.6 , pp. e00782-e00713
    • Costello, E.K.1    Carlisle, E.M.2    Bik, E.M.3    Morowitz, M.J.4    Relman, D.A.5
  • 23
    • 84873510063 scopus 로고    scopus 로고
    • A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets
    • Koren O, Knights D, Gonzalez A, Waldron L, Segata N, Knight R, Huttenhower C, Ley RE. A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets. PLoS Comput Biol. 2013;9(1):e1002863.
    • (2013) PLoS Comput Biol. , vol.9 , Issue.1
    • Koren, O.1    Knights, D.2    Gonzalez, A.3    Waldron, L.4    Segata, N.5    Knight, R.6    Huttenhower, C.7    Ley, R.E.8
  • 24
    • 84989245447 scopus 로고    scopus 로고
    • 16S rRNA genebased profiling of the human infant gut microbiota is strongly influenced by sample processing and PCR primer choice
    • Walker AW, Martin JC, Scott P, Parkhill J, Flint HJ, Scott KP. 16S rRNA genebased profiling of the human infant gut microbiota is strongly influenced by sample processing and PCR primer choice. Microbiome. 2015;3:26.
    • (2015) Microbiome. , vol.3 , pp. 26
    • Walker, A.W.1    Martin, J.C.2    Scott, P.3    Parkhill, J.4    Flint, H.J.5    Scott, K.P.6
  • 25
    • 84962524929 scopus 로고    scopus 로고
    • The placental microbiome is altered among subjects with spontaneous preterm birth with and without chorioamnionitis
    • Prince AL, Ma J, Kannan PS, Alvarez M, Gisslen T, Harris RA, et al. The placental microbiome is altered among subjects with spontaneous preterm birth with and without chorioamnionitis. Am J Obstet Gynecol. 2016;214(5):627.
    • (2016) Am J Obstet Gynecol. , vol.214 , Issue.5 , pp. 627
    • Prince, A.L.1    Ma, J.2    Kannan, P.S.3    Alvarez, M.4    Gisslen, T.5    Harris, R.A.6
  • 29
    • 77249163771 scopus 로고    scopus 로고
    • Metagenomic analyses reveal antibiotic-induced temporal and spatial changes in intestinal microbiota with associated alterations in immune cell homeostasis
    • Hill DA, Hoffmann C, Abt MC, Du Y, Kobuley D, Kirn TJ, Bushman FD, Artis D. Metagenomic analyses reveal antibiotic-induced temporal and spatial changes in intestinal microbiota with associated alterations in immune cell homeostasis. Mucosal Immunol. 2010;3(2):148-58.
    • (2010) Mucosal Immunol. , vol.3 , Issue.2 , pp. 148-158
    • Hill, D.A.1    Hoffmann, C.2    Abt, M.C.3    Du, Y.4    Kobuley, D.5    Kirn, T.J.6    Bushman, F.D.7    Artis, D.8
  • 30
    • 0027509645 scopus 로고
    • Structure of the 16 S ribosomal RNA of the thermophilic cyanobacterium Chlorogloeopsis HTF ('Mastigocladus laminosus HTF') strain PCC7518, and phylogenetic analysis
    • Wilmotte A, Van der Auwera G, De Wachter R. Structure of the 16 S ribosomal RNA of the thermophilic cyanobacterium Chlorogloeopsis HTF ('Mastigocladus laminosus HTF') strain PCC7518, and phylogenetic analysis. FEBS Lett. 1993;317(1-2):96-100.
    • (1993) FEBS Lett. , vol.317 , Issue.1-2 , pp. 96-100
    • Wilmotte, A.1    Van der Auwera, G.2    De Wachter, R.3
  • 35
    • 84965039431 scopus 로고    scopus 로고
    • R Foundation for Statistical Computing, Vienna, Austria. 2014.
    • R Core Team. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria, 2012. 2014. ISBN 3-900051-07-0.
    • (2012) R: a language and environment for statistical computing
  • 36
  • 37
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar RC. Search and clustering orders of magnitude faster than BLAST. Bioinformatics. 2010;26(19):2460-1.
    • (2010) Bioinformatics. , vol.26 , Issue.19 , pp. 2460-2461
    • Edgar, R.C.1
  • 39
    • 77949718257 scopus 로고    scopus 로고
    • FastTree 2-approximately maximum-likelihood trees for large alignments
    • Price MN, Dehal PS, Arkin AP. FastTree 2-approximately maximum-likelihood trees for large alignments. PLoS One. 2010;5(3):e9490.
    • (2010) PLoS One. , vol.5 , Issue.3
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 40
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Stackebrandt E, Goodfellow M, editors. New York: John Wiley and Sons.
    • Lane DJ. 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M, editors. Nucleic Acid Techniques in Bacterial Systematics. New York: John Wiley and Sons; 1991. p. 115-75.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 41
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylogenetic method for comparing microbial communities
    • Lozupone C, Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol. 2005;71(12):8228-35.
    • (2005) Appl Environ Microbiol. , vol.71 , Issue.12 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 43
    • 1042304216 scopus 로고    scopus 로고
    • APE: Analyses of Phylogenetics and Evolution in R language
    • Paradis E, Claude J, Strimmer K. APE: Analyses of Phylogenetics and Evolution in R language. Bioinformatics. 2004;20(2):289-90.
    • (2004) Bioinformatics. , vol.20 , Issue.2 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 46
    • 84881222948 scopus 로고    scopus 로고
    • Bayesian estimation supersedes the t test
    • Kruschke JK. Bayesian estimation supersedes the t test. J Exp Psychol Gen. 2013;142(2):573-603.
    • (2013) J Exp Psychol Gen. , vol.142 , Issue.2 , pp. 573-603
    • Kruschke, J.K.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.