The application of genetic markers to landscape management

Lecture Notes in Geoinformation and Cartography

Volumn 0, Issue 9783540691679, 2008, Pages 211-233

  Sunnucks, Paul ^a   Taylor, Andrea C ^a  

^a MONASH UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ECOLOGY; GEOMORPHOLOGY; MOLECULAR BIOLOGY;

GENETIC EXCHANGE; GENETIC MARKERS; HUMAN WELLBEING; LANDSCAPE CHANGES; LANDSCAPE FEATURE; LANDSCAPE MANAGEMENT; POPULATION PERSISTENCES; POPULATION PROCESS;

POPULATION STATISTICS;

EID: 85028808712     PISSN: 18632246     EISSN: 18632351     Source Type: Book Series    
DOI: 10.1007/978-3-540-69168-6_11     Document Type: Article

References (64)

1. Allendorf FW, Luikart G (2006) Conservation and the genetics of populations. Blackwell, Oxford
2. Alter SE, Rynes E, Palumbi SR (2007) DNA evidence for historic population size and past ecosystem impacts of gray whales. In: Proceedings of the National Academy of Sciences of the United States of America 104:15162-15167
3. Avise JC (2004) Molecular markers, natural history, and evolution, 2nd edn.
4. Sinaeur, Sunderland, Massachusetts Baker CS, Cooke JG, Lavery S, Dalebout ML, Ma YU, Funahashi N, Carraher C, Brownell RL Jr (2007) Estimating the number of whales entering trade using DNA profiling and capture-recapture analysis of market products. Molecular Ecology 16:2617-2626
5. Banks SC, Taylor AC (2004) The utility of genetic analysis in forest fauna conservation. In: Lunney D (ed) Conservation of Australia’s forest fauna, 2nd edn. Royal Zoological Society of NSW, Mosman, NSW, pp 576-590
6. Banks SC, Hoyle SD, Horsup A, Sunnucks P, Wilton A, Taylor AC (2003) Demographic monitoring of an entire species by genetic analysis of non- invasively collected material. Animal Conservation 6:101-108
7. Banks SC, Finlayson GR, Lawson SJ, Lindenmayer DB, Paetkau D, Ward SJ, Taylor AC (2005a) The effects of habitat fragmentation due to forestry plantation establishment on the demography and genetic variation of a marsupial carnivore, Antechinus agilis. Biological Conservation 122:581-597
8. Banks SC, Lindenmayer DB, Ward SJ, Taylor AC (2005b) The effects of habitat fragmentation via forestry plantation establishment on spatial genotypic structure in the small marsupial carnivore, Antechinus agilis. Molecular Ecology, 14:1667-1680
9. Bennett AF, Radford JQ, Haslem A (2006) Properties of land mosaics: implica-tions for nature conservation in agricultural environments. Biological Conser-vation 133:250-264
10. Bernatchez L, Duchesne P (2000) Individual-based genotype analysis in studies of parentage and population assignment: how many loci, how many alleles? Ca-nadian Journal of Fisheries and Aquatic Sciences 57:1-12
11. Davies KF, Melbourne BA (2007) The tails of two geckos tell the story of dispersal in a fragmented landscape. Molecular Ecology 16:3289-3291
12. Debain S, Chadaeuf J, Curt T, Kunstler G, Lepart J (2007) Comparing effective dispersal in expanding population of Pinus sylvestris and Pinus nigra in calcareous grassland. Canadian Journal of Forest Research-Revue Canadienne De Recherche Forestiere 37:705-718
13. DeSalle R, Amato G (2004) The expansion of conservation genetics. Nature Reviews Genetics 5:702-712
14. DeYoung RW, Honeycutt RL (2005) The molecular toolbox: genetic techniques in wildlife ecology and management. Journal of Wildlife Management 69:1362-1384
15. Eldridge MDB, Kinnear JE, Onus ML (2001) Source population of dispersing rock-wallabies (Petrogale lateralis) identified by assignment tests on multilocus genotypic data. Molecular Ecology 10:2867-2876
16. Epps CW, Wehausen JD, Bleich VC, Torres SG, Brashares JS (2007) Optimising dispersal and corridor models using landscape genetics. Journal of Applied Ecology 44:714-724
17. Excoffier L, Heckel G (2006) Computer programs for population genetics data analysis: a survival guide. Nature Reviews Genetics 7:745-758
18. Feder ME, Mitchell-Olds T (2003) Evolutionary and ecological functional genomics. Nature Reviews Genetics 4:651-657
19. Forest F, Grenyer R, Rouget M, Davies TJ, Cowling RM, Faith DP, Balmford A, Manning JC, Proches S, van der Bank M, Reeves G, Hedderson TAJ, Savolainen V (2007) Preserving the evolutionary potential of floras in biodiversity hotspots. Nature 445:757-760
20. Frankham R (2005) Genetics and extinction. Biological Conservation 126:131-140
21. Garrick RC, Sunnucks P (2006) Development and application of three-tiered nu-clear DNA genetic markers for basal hexapods using single-stranded confor-mation polymorphism coupled with targeted DNA sequencing. BMC Genetics 7:11. doi:10.1186/1471-2156-7-11
22. Garrick RC, Sands CJ, Rowell DM, Tait NN, Greenslade P, Sunnucks P (2004) Phylogeography recapitulates topography: very fine-scale local endemism of a saproxylic ‘giant’ springtail at Tallaganda in the Great Dividing Range of south-east Australia. Molecular Ecology 13:3329-3344
23. Garrick RC, Sands CJ, Sunnucks P (2006) The use and application of phy- logeography for invertebrate conservation research and planning. In: Grove, SJ, Hanula JL (eds.) Insect biodiversity and dead wood: Proceedings of a Symposium for the 22nd International Congress of Entomology. General Technical Report, US Department of Agriculture Forest Service, Southern Research Station, Asheville, pp 15-22, available at http://www.srs.fs.usda.gov/pubs/
24. Garrick RC, Sands CJ, Rowell DM, Hillis DM, Sunnucks P (2007) Catchments catch all: long-term population history of a giant springtail from the southeast Australian highlands — a multigene approach. Molecular Ecology 16:1865-1882
25. Garrick RC, Rowell DM, Simmons CS, Hillis DM, Sunnucks P (2008) Fine-scale phylogeographic congruence despite demographic incongruence in two low- mobility saproxylic springtails. Evolution (online acceptance) doi:10.1111/j.1558-5646.2008.00349.x
26. Geffen E, Anderson MJ, Wayne RK (2004) Climate and habitat barriers to dispersal in the highly mobile grey wolf. Molecular Ecology 13:2481-2490
27. Hansson L (1991) Dispersal and connectivity in metapopulations. Biological Journal of the Linnean Society of London 42:89-103
28. Hoehn M, Sarre SD, Henle K (2007) The tales of two geckos: does dispersal prevent extinction in recently fragmented habitat? Molecular Ecology 16:3299-3312
29. Holderegger R, Wagner HH (2006) A brief guide to landscape genetics. Landscape Ecology 21:793-796.
30. Joost S, Bonin A, Bruford MW, Despres L, Conord C, Erhardt G, Taberlet P (2007) A spatial analysis method (SAM) to detect candidate loci for selection: towards a landscape genomics approach to adaptation. Molecular Ecology 16:3955-3969
31. Kearney M, Porter WP (2006) Ecologists have already started rebuilding commu-nity ecology from functional traits. Trends in Ecology and Evolution 21:481-482
32. Kellermann VM, van Heerwaarden B, Hoffmann AA, Sgro CM (2006) Very low additive genetic variance and evolutionary potential in multiple populations of two rainforest Drosophila species. Evolution 60:1104-1108
33. Krieger MJB (2005) To b or not to b: a pheromone-binding protein regulates colony social organisation in fire ants. Bioessays 27:91-99
34. Lada H, Mac Nally R, Taylor AC (2007a) Distinguishing past from present gene flow along and across a river: the case of the carnivorous marsupial (Antechinus flavipes) on southern Australian floodplains. Conservation Genetics 10.1007/s10592-007-9372-5
35. Lada H, Thomson JR, Mac Nally R, Horrocks G, Taylor AC (2007b) Evaluating simultaneous impacts of three anthropogenic effects on a floodplain-dwelling marsupial Antechinus flavipes. Biological Conservation 134:527-536
36. Lancaster ML, Gemmell NJ, Negro S, Goldsworthy S, Sunnucks P (2006) Ménage à trois on Macquarie Island: hybridisation among three species of fur seal (Arctocephalus spp.) following historical population extinction. Molecular Ecology 15:3681-3692
37. Lee CE, Mitchell-Olds T (2006) Preface to the special issue: ecological and evolu-tionary genomics of populations in nature. Molecular Ecology 15:1193-1196
38. Lindenmayer DB, Peakall R (2000) The Tumut experiment-integrated demo-graphic and genetic studies to unravel fragmentation effects: a case study of the native bush rats. In: Young A, Clark G (eds.) Genetics, demography, and the viability of fragmented populations. Cambridge University Press, Cambridge, pp 173-201
39. McIntire EJB, Schultz CB, Crone EE (2007) Designing a network for butterfly habitat restoration: where individuals, populations and landscapes interact. Journal of Applied Ecology 44:725-736
40. Manel S, Gaggiotti OE, Waples RS (2005) Assignment methods: matching biological questions with appropriate techniques. Trends in Ecology and Evolution 20:136-142
41. Manel S, Schwartz MK, Luikart G, Taberlet P (2003) Landscape genetics: com-bining landscape ecology and population genetics. Trends in Ecology and Evolution 18:189-197
42. Otis DL, Burnham KP, White GC, Anderson DR (1978) Statistical inference from capture data on closed animal populations. Wildlife Monographs 62:1-135
43. Peakall R, Smouse PE (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes 6:288-295
44. Pearse DE, Crandall KA (2004) Beyond FST. Analysis of population genetic data for conservation. Conservation Genetics 5:585-602
45. Piggott MP, Taylor AC (2003) Remote collection of animal DNA and its applications in conservation, management and understanding the population biology of rare and cryptic species. Wildlife Research 30:1-13
46. Radford JQ, Bennett AF, Cheers GJ (2005) Landscape-level thresholds of habitat cover for woodland-dependent birds. Biological Conservation 124: 317-337
47. Reusch TBH, Wood TE (2007) Molecular ecology of global change. Molecular Ecology 16:3973-3992
48. Reusch TBH, Ehlers A, Hammerli A, Worm B (2005) Ecosystem recovery after climatic extremes enhanced by genotypic diversity. In: Proceedings of the National Academy of Sciences of the United States of America 102:2826-2831
49. Schmuki C, MacEachern S, Runciman D, Vorburger C, Sunnucks P (2006) Beetles on islands of bush in a sea of pine: impacts of habitat fragmentation on two species of Adeliini at Tumut, SE Australia. Molecular Ecology 15:1481-1492
50. Schmuki C, Woodman J, Sunnucks P (2007) Physiology complements population structure of two endemic log-dwelling beetles. Environmental Entomology 36:524-530
51. Scribner KT, Blanchong JA, Bruggeman DJ, Epperson BK, Lee CY, Pan YW, Shorey RI, Prince HH, Winterstein SR, Luukkonen DR (2005) Geographical genetics: Conceptual foundations and empirical applications of spatial genetic data in wildlife management. Journal of Wildlife Management 69:1434-1453
52. Selkoe KA, Toonen RJ (2006) Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers. Ecology Letters 9:615-629
53. Stow AJ, Sunnucks P (2004a) High mate and site fidelity in Cunningham’s skinks (Egernia cunninghami) in natural and fragmented habitat. Molecular Ecology 13:419-430
54. Stow AJ, Sunnucks P (2004b) Inbreeding avoidance in Cunningham’s skinks (Egernia cunninghami) in natural and fragmented habitat. Molecular Ecology 13:443-447
55. Stow AJ, Sunnucks P, Briscoe DA, Gardener MG (2001) The impact of habitat fragmentation on dispersal in Cunningham’s skink (Egernia cunninghami): evidence from allelic and genotypic analyses of microsatellites. Molecular Ecology 10:867-878
56. Spielman D, Brook BW, Frankham R (2004) Most species are not driven to extinction before genetic factors impact them. Proceedings of the National Academy of Sciences of the United States of America 101:15261-15264
57. Sunnucks P (2000) Efficient genetic markers for population biology. Trends in Ecology and Evolution 15:199-203
58. Sunnucks P, Blacket MJ, Taylor JM, Sands CJ, Ciavaglia SA, Garrick RC, Tait NN, Rowell DM, Pavlova A (2006) A tale of two flatties: different responses of two terrestrial flatworms to past environmental climatic fluctuations at Tal- laganda in montane south-eastern Australia. Molecular Ecology 15:5413-4531
59. Tallmon DA, Koyuk A, Luikart G, Beaumont MA (2008) ONESAMP: a program to estimate effective population size using approximate Bayesian computation. Molecular Ecology Resources 8:299-301
60. Taylor AC, Tyndale-Biscoe H, Lindenmayer DB (2007) Unexpected persistence on habitat islands: genetic signatures reveal dispersal of a eucalypt-dependent marsupial through a hostile pine matrix. Molecular Ecology 16:2655-2666
61. van Heerwaarden B, Hoffmann AA (2007) Global warming: fly populations are responding rapidly to climate change. Current Biology 17:R16-R18
62. Waser PM, Strobeck C (1998) Genetic signatures of interpopulation dispersal. Trends in Ecology and Evolution 13:43-44
63. Young AG, Clarke GM (eds) (2000) Genetics, demography and viability of fragmented populations. Cambridge University Press, Cambridge
64. Young AG, Brown AHD, Murray BG, Thrall PH, Miller CH (2000) Genetic erosion, restricted mating and reduced viability in fragmented populations of the endangered grassland herb Rutidosis leptorrhynchoides. In: Young AG, Clarke GM (eds) Genetics, demography and viability of fragmented populations. Cambridge University Press, Cambridge, pp 335-359