The effects of habitat fragmentation via forestry plantation establishment on spatial genotypic structure in the small marsupial carnivore, Antechinus agilis

Molecular Ecology

Volumn 14, Issue 6, 2005, Pages 1667-1680

  Banks, S C ^a   Lindenmayer, D B ^b   Ward, S J ^c   Taylor, A C ^a  

^a MONASH UNIVERSITY   (Australia)

^b AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

^c UNIVERSITY OF MELBOURNE   (Australia)

Author keywords

Antechinus agilis; Corridor; Dispersal; Habitat fragmentation; Microsatellite; Spatial autocorrelation

Indexed keywords

MICROSATELLITE DNA; MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; AUSTRALIA; COMPARATIVE STUDY; DEMOGRAPHY; ENVIRONMENT; FEMALE; GENETICS; GENOTYPE; HAPLOTYPE; MALE; MARSUPIAL; POPULATION DYNAMICS; POPULATION GENETICS; SEX DIFFERENCE;

ANIMALS; DEMOGRAPHY; DNA, MITOCHONDRIAL; ENVIRONMENT; FEMALE; GENETICS, POPULATION; GENOTYPE; HAPLOTYPES; MALE; MARSUPIALIA; MICROSATELLITE REPEATS; NEW SOUTH WALES; POPULATION DYNAMICS; SEX FACTORS;

ANTECHINUS; ANTECHINUS AGILIS; METATHERIA;

EID: 18244379871     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2005.02525.x     Document Type: Article

References (59)

1. Bakker VJ, Van Vuren DH (2004) Gap-crossing decisions by the red squirrel, a forest-dependent small mammal. Conservation Biology, 18, 689-697.
2. Banks SC, Finlayson GR, Lawson SJ et al. (2005) The effects of habitat fragmentation due to forestry plantation establishment on demography and genetic variation in a marsupial carnivore, Antechinus agilis. Biological Conservation, 122, 581-597.
3. Banks SC, Skerratt LF, Taylor AC (2002) Female dispersal and relatedness structure in common wombats (Vombatus ursinus). Journal of Zoology, 256, 389-399.
4. Beier P, Noss RF (1998) Do habitat corridors provide connectivity? Conservation Biology, 12, 1241-1252.
5. Bohonak AJ (2002) IBD (ISOLATION BY DISTANCE): a program for analyses of isolation by distance. Journal of Heredity, 92, 153-154.
6. Burgman MA, Lindenmayer DB (1998) Conservation Biology for the Australian Environment. Surrey Beatty and Sons, Chipping Norton.
7. Castellano S, Balletto E (2002) Is the partial Mantel test inadequate? Evolution, 56, 1871-1873.
8. Cockburn A, Scott MP, Scotts DJ (1985) Inbreeding avoidance and male-biased natal dispersal in Antechinus spp. (Marsupialia, Dasyuridae). Animal Behaviour, 33, 908-915.
9. Department of Primary Industries and Energy (1997) Plantations for Australia: The 2020 Vision. Joint Report from Ministerial Council on Forestry, Fisheries and Aquaculture, Standing Committee on Forestry, Plantations Australia, Australian Forest Growers, National Association of Forest Industries. Department of Primary Industries and Energy, Canberra.
10. Downes SJ, Handasyde KA, Elgar MA (1997) The use of corridors by mammals in fragmented Australian eucalypt forests. Conservation Biology, 11, 718-726.
11. Dupanloup de Ceuninck I, Schneider S, Langaney A, Excoffier L (2000) Inferring the impact of linguistic boundaries on population differentiation: application to the Afro-Asiatic-Indo-European case. European Journal of Human Genetics, 8, 750-756.
12. Dupanloup I, Schneider S, Excoffier L (2002) A simulated annealing approach to define the genetic structure of populations. Molecular Ecology, 11, 2571-2581.
13. Gerlach G, Musolf K (2000) Fragmentation of landscape as a cause for genetic subdivision in bank voles. Conservation Biology, 14, 1066-1074.
14. Haddad NM (1999) Corridor and distance effects on interpatch movements: a landscape experiment with butterflies. Ecological Applications, 9, 612-622.
15. Hanski I (1994a) Patch-occupancy dynamics in fragmented landscapes. Trends in Ecology & Evolution, 9, 131-135.
16. Hanski I (1994b) A practical model of metapopulation dynamics. Journal of Animal Ecology, 63, 151-162.
17. Henle K, Lindenmayer DB, Margules CR, Saunders DA, Wissel C (2004) Species survival in fragmented landscapes: where are we now? Biodiversity and Conservation, 13, 1-8.
18. Hobbs RJ (1992) The role of corridors in conservation: solution or bandwagon? Trends in Ecology and Evolution, 7, 389-392.
19. Hood GM (2004) POPTOOLS Version 2.6.2. Available in the internet: http://www.cse.csiro.au/poptools.
20. Johnson JA, Toepfer JE, Dunn PO (2003) Contrasting patterns of mitochondrial and microsatellite population structure in fragmented populations of greater prairie-chickens. Molecular Ecology, 12, 3335-3347.
21. Keller I & Largiader CR (2003) Recent habitat fragmentation caused by major roads leads to reduction of gene flow and loss of genetic variability in in ground beetles. Proceedings of the Royal Society of London. Series B, Biological Sciences, 270, 417-423.
22. Kimura M (1953) 'Stepping stone' model of population structure. Annual Report of the National Institute of Genetics, Japan, 3, 62-63.
23. King AW, With KA (2002) Dispersal success on spatially structured landscapes: when do spatial pattern and dispersal behaviour really matter? Ecological Modelling, 147, 23-29.
24. Knight ME, Van Oppen MJH, Smith HL, Rico C, Hewitt GM, Turner GF (1999) Evidence for male-biased dispersal in Lake Malawi cichlids from microsatellites. Molecular Ecology, 8, 1521-1527.
25. Knutsen H, Rukke BA, Jorde PE, Ims RA (2000) Genetic differentiation among populations of the beetle Bolitophagus reticulatus (Coleoptera: Tenebrionidae) in a fragmented and a continuous landscape. Heredity, 84, 667-676.
26. Koenig WD, Van Vuren D, Hooge PN (1996) Detectability, philopatry and the distribution of dispersal distances in vertebrates. Trends in Ecology & Evolution, 11, 514-517.
27. Kraaijeveld-Smit FJL, Lindenmayer DB, Taylor AC (2002) Dispersal patterns and population structure in a small marsupial, Antechinus agilis, from two forests analysed using microsatellite markers. Australian Journal of Zoology, 50, 325-338.
28. Lawes MJ, Mealin PE, Piper SE (2000) Patch occupancy and potential metapopulation dynamics of three forest mammals in fragmented afromontane forest in South Africa. Conservation Biology, 14, 1088-1098.
29. Lazenby-Cohen KA, Cockburn A (1991) Social and foraging components of the home range in Antechinus stuartii (Dasyuridae: Marsupialia). Australian Journal of Ecology, 16, 301-307.
30. Lindenmayer DB, Peakall R (2000) The Tumut experiment - integrating demographic and genetic studies to unravel fragmentation effects. In: Genetics, Demography and Population Viability (eds Clarke G, Young A), pp. 173-201. Cambridge University Press, Cambridge.
31. Lindenmayer DB, Cunningham RB, Pope ML (1999a) A large-scale 'experiment' to examine the effects of landscape context and habitat fragmentation on mammals. Biological Conservation, 88, 387-403.
32. Lindenmayer DB, McCarthy MA, Pope ML (1999b) Arboreal marsupial incidence in eucalypt patches in southeastern Australia: a test of Hanski's incidence function metapopulation model for patch occupancy. Oikos, 84, 99-109.
33. Lindenmayer DB, Cunningham RB, Pope ML, Donnelly CF (1997) The response of arboreal marsupials to landscape context: a large scale fragmentation study. Ecological Applications, 9, 594-611.
34. Lugon-Moulin N, Hausser J (2002) Phylogeographical structure, postglacial recolonization and barriers to gene flow in the distinctive Valais chromosome race of the common shrew (Sorex araneus). Molecular Ecology, 11, 785-794.
35. Mech SH, Hallett JG (2001) Evaluating the effectiveness of corridors: a genetic approach. Conservation Biology, 15, 467-474.
36. Mills LS, Smouse PE (1994) Demographic consequences of inbreeding in remnant populations. American Naturalist, 144, 412-431.
37. Mossman CA, Waser PM (2001) Effects of habitat fragmentation on population genetic structure in the white-footed mouse (Peromyscus leucopus). Canadian Journal of Zoology, 79, 285-295.
38. Peakall R, Ruibal M, Lindenmayer DB (2003) Spatial autocorrelation analysis offers new insights into gene flow in the Australian bush rat, Rattus fuscipes. Evolution, 57, 1182-1195.
39. Peakall R, Smouse PE (2001) GENALEX version 5 (GENETIC ANALYSIS IN EXCEL): population genetic software for teaching and research. Australian National University, Canberra, Australia. Available at http://www.anu.edu.au/ BoZo/GenAlEx/.
40. Queller DC, Goodnight KF (1989) Estimating relatedness using genetic markers. Evolution, 43, 258-275.
41. Rail JF, Darveau M, Desrochers A, Huot J (1997) Territorial responses of boreal forest birds to habitat gaps. Condor, 99, 976-980.
42. Raufaste N, Rousset F (2001) Are partial Mantel tests adequate? Evolution, 55, 1703-1705.
43. Rousset F (2000) Genetic differentiation between individuals. Journal of Evolutionary Biology, 13, 58-62.
44. Rousset F (2002) Partial Mantel tests: reply to Castellano and Balletto. Evolution, 56, 1874-1875.
45. Schmuki C (2003) Impacts of habitat fragmentation on two species of Adeliini beetle at Tumut. NSW Honours Thesis, Latrobe University.
46. Schneider S, Roessli D, Excoffier L (2000) ARLEQUIN, Version 2.000: a software for populatin genetics data analysis. Genetics and Biometry Laboratory, Department of Anthropology, University of Geneva, Switzerland.
47. Simberloff D, Cox J (1987) Consequences and costs of conservation corridors. Conservation Biology, 1, 63-71.
48. Simberloff D, Farr JA, Cox J, Mehlman DW (1992) Conservation corridors: conservation bargains or poor investments? Conservation Biology, 6, 493-504.
49. Smouse PE, Peakall R (1999) Spatial autocorrelation analysis of individual multiallele and multilocus genetic structure. Heredity, 82, 561-573.
50. Stacey PB, Taper R (1992) Environmental variation and the persistence of small populations. Ecological Applications, 2, 18-29.
51. Steinberg EK, Jordan CE (1997) Using molecular genetics to learn about the ecology of threatened species: the allure and illusion of measuring genetic structure in natural populations. In: Conservation Biology for the Coming Decade (eds Fiedler PL, Kareiva PM), pp. 440-460. Chapman & Hall, New York.
52. Stow AJ, Sunnucks P (2004) Inbreeding avoidance in Cunningham's skinks (Egernia cunninghami) in natural and fragmented habitat. Molecular Ecology, 13, 443-447.
53. Stow AJ, Sunnucks P, Briscoe DA, Gardner MG (2001) The impact of habitat fragmentation on dispersal of Cunningham's skink (Egernia cunninghamii): evidence from allelic and genotypic analyses of microsatellites. Molecular Ecology, 10, 867-878.
54. Sumner J, Jessop T, Paetkau D, Moritz C (2004) Limited effect of anthropogenic habitat fragmentation on molecular diversity in a rainforest skink, Gnypetoscincus queenslandiae. Molecular Ecology, 13, 259-269.
55. Sunnucks P (2000) Efficient genetic markers for population biology. Trends in Ecology & Evolution, 15, 199-203.
56. Tallmon DA, Draheim HM, Mills LS, Allendorf FW (2002) Insights into recently fragmented vole populations from combined genetic and demographic data. Molecular Ecology, 11, 699-709.
57. Taylor AC, Horsup A, Johnson CN, Sunnucks P, Sherwin WB (1997) Relatedness structure detected by microsatellite analysis and attempted pedigree reconstruction in an endangered marsupial, the northern hairy-nosed wombat Lasiorhinus krefftii. Molecular Ecology, 6, 9-19.
58. Tilman D, May RM, Lehman CL, Nowak MA (1994) Habitat destruction and the extinction debt. Nature, 371, 65-66.
59. Tyndale-Biscoe CH, Smith RFC (1969) Studies on the marsupial glider, Schoinobates volans (Kerr): II. Population structure and regulatory mechanisms. Journal of Animal Ecology, 38, 637-650.