Fine-scale phylogeographic congruence despite demographic incongruence in two low-mobility saproxylic springtails

Evolution

Volumn 62, Issue 5, 2008, Pages 1103-1118

  Garrick, Ryan C ^a,e   Rowell, David M ^b   Simmons, Chris S ^c   Hillis, David M ^c   Sunnucks, Paul ^d  

^a LA TROBE UNIVERSITY   (Australia)

^b AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

^c UNIVERSITY OF TEXAS AT AUSTIN   (United States)

^d MONASH UNIVERSITY   (Australia)

^e VIRGINIA COMMONWEALTH UNIVERSITY   (United States)

Author keywords

Comparative phylogeography; Concerted response hypothesis; Historical demography; Population structure; Temporal contrasts

Indexed keywords

BIOGEOGRAPHY; COMPARATIVE STUDY; DEMOGRAPHY; DISPERSAL; GENETIC STRUCTURE; INSECT; MOBILITY; PHYLOGENETICS; PHYLOGEOGRAPHY; POPULATION STRUCTURE;

ANIMAL; ARTHROPOD; ARTICLE; AUSTRALIA; DEMOGRAPHY; GENETICS; GEOGRAPHY; METHODOLOGY; MOLECULAR GENETICS; MOTOR ACTIVITY; NUCLEOTIDE SEQUENCE; PHYLOGENY; PHYSIOLOGY; POPULATION GENETICS; POPULATION MIGRATION; TIME;

ANIMAL MIGRATION; ANIMALS; ARTHROPODS; AUSTRALIA; DEMOGRAPHY; GENETICS, POPULATION; GEOGRAPHY; MOLECULAR SEQUENCE DATA; MOTOR ACTIVITY; PHYLOGENY; RESEARCH DESIGN; TIME FACTORS;

AUSTRALASIA; AUSTRALIA; GREAT DIVIDING RANGE;

COLLEMBOLA;

EID: 43049085952     PISSN: 00143820     EISSN: 15585646     Source Type: Journal    
DOI: 10.1111/j.1558-5646.2008.00349.x     Document Type: Article

References (65)

1. Avise, J. C. 2000. Phylogeography: the history and formation of species. Harvard Univ. Press, Cambridge.
2. Barclay, S., J. E. Ash, and D. M. Rowell. 2000a. Environmental factors influencing the presence and abundance of a log-dwelling invertebrate, Euperipatoides rowelli (Onychophora: Peripatopsidae). J. Zool. 250 : 425 436.
3. Barclay, S., D. M. Rowell, and J. E. Ash. 2000b. Pheromonally mediated colonization patterns in the velvet worm Euperipatoides rowelli (Onychophora). J. Zool. 250 : 437 446.
4. Barton, N. H., and G. M. Hewitt. 1985. Analysis of hybrid zones. Annu. Rev. Ecol. Systemat. 16 : 113 148.
5. Beavis, A. S., and D. M. Rowell. 2006. Phylogeography of two Australian species of funnel web spider (Araneae: Mygalomorphae: Hexathelidae) in Tallaganda State Forest, New South Wales. Pp. 23 29 in S. J. Grove and J. L. Hanula, eds. Insect biodiversity and dead wood: proceedings of a symposium for the 22nd International Congress of Entomology, General Technical Report SRS-93. U.S. Department of Agriculture Forest Service, Southern Research Station, Asheville.
6. Beerli, P., and J. Felsenstein. 2001. Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach. Proc. Natl. Acad. Sci. USA 98 : 4563 4568.
7. Bermingham, E., and C. Moritz. 1998. Comparative phylogeography: concepts and applications. Mol. Ecol. 7 : 367 369.
8. Bowler, J. M. 1982. Aridity in the late Tertiary and Quaternary of Australia. Pp. 35 45 in W. R. Barker and P. J. M. Greenslade, eds. Evolution of the flora and fauna of arid Australia. Peacock Publications, Frewville.
9. Carstens, B. C., A. L. Stevenson, J. D. Degenhardt, and J. S. Sullivan. 2004. Testing nested phylogenetic and phylogeographic hypotheses in the Plethodon vandykei species group. Syst. Biol. 53 : 781 792.
10. Carstens, B. C., S. J. Brunsfeld, J. R. Dembowski, J. M. Good, and J. Sullivan. 2005. Investigating the evolutionary history of the Pacific Northwest mesic forest ecosystem: hypothesis-testing within a comparative phylogeographic framework. Evolution 59 : 1639 1652.
11. Clement, M., D. Posada, and K. A. Crandall. 2000. TCS: a computer program to estimate gene genealogies. Mol. Ecol. 9 : 1657 1659.
12. DeChaine, E. G., and A. P. Martin. 2006. Using coalescent simulations to test the impact of Quaternary climate cycles on divergence in an alpine plant-insect association. Evolution 60 : 1004 1013.
13. Fortin, M.-J., P. Drapeau, and G. M. Jacquez. 1996. Quantification of the spatial co-occurrences of ecological boundaries. Oikos 77 : 51 60.
14. Frakes, L. A., B. McGowran, and J. M. Bowler. 1987. Evolution of Australian environments. Pp. 1 16 in G. R. Dyne and D. W. Walton, eds. The fauna of Australia, volume 1. Australian Government Publishing Service, Canberra.
15. Garrick, R. C., and P. Sunnucks. 2006. Development and application of three-tiered nuclear genetic markers for basal Hexapods using single-stranded conformation polymorphism coupled with targeted DNA sequencing. BMC Genet. 7 : 11.
16. Garrick, R. C., C. J. Sands, D. M. Rowell, N. N. Tait, P. Greenslade, and P. Sunnucks. 2004. Phylogeography recapitulates topography: very fine-scale local endemism of a saproxylic 'giant' springtail at Tallaganda in the Great Dividing Range of south-east Australia. Mol. Ecol. 13 : 3329 3344.
17. Garrick, R. C., C. J. Sands, D. M. Rowell, D. M. Hillis, and P. Sunnucks. 2007. Catchments catch all: long-term population history of a giant springtail from the southeast Australian highlands - a multigene approach. Mol. Ecol. 16 : 1865 1882.
18. Garrick, R. C., R. J. Dyer, L. B. Beheregaray, and P. Sunnucks. In press. Babies and bathwater: a comment on the premature obituary for nested clade phylogeographical analysis. Mol. Ecol. doi :
19. Graham, C. H., C. Moritz, and S. E. Williams. 2006. Habitat history improves prediction of biodiversity in rainforest fauna. Proc. Natl. Acad. Sci. USA 103 : 632 636.
20. Greenslade, P. 1991. Notes on the Australian Uchidanurinae (Collembola: Neanuridae). Pp. 63 65 in G. K. Veeresh, D. Rajagopal, and C. A. Viraktamath, eds. Advances in management and conservation of soil fauna. Oxford and IBH Publishing Co., New Delhi.
21. Grove, S. J. 2002. Saproxylic insect ecology and the sustainable management of forests. Annu. Rev. Ecol. Systemat. 33 : 1 23.
22. Heatwole, H. 1987. Major components and distributions of the terrestrial fauna. Pp. 69 100 in G. R. Dyne and D. W. Walton, eds. The fauna of Australia, volume 1. Australian Government Publishing Service, Canberra.
23. Hey, J. and C. A. Machado. 2003. The study of structured populations - new hope for a difficult and divided science. Nature Rev. Genet. 4 : 535 543.
24. Hickerson, M. J., G. Dolman, and C. Moritz. 2006. Comparative phylogeographic summary statistics for testing simultaneous vicariance. Mol. Ecol. 15 : 209 223.
25. Hodges, K. M., D. M. Rowell, and J. S. Keogh. 2007. Remarkably different phylogeographic structure in two closely related lizard species in a zone of sympatry in south-eastern Australia. J. Zool. 272 : 64 72.
26. Hope, G. S. 1994. Quaternary vegetation. Pp. 368 389 in R. S. Hill, ed. History of the Australian vegetation: Cretaceous to recent. Cambridge Univ. Press, Cambridge.
27. Huelsenbeck, J. P., D. M. Hillis, and R. Jones. 1996. Parametric bootstrapping in molecular phylogenetics: applications and performance. Pp. 19 45 in J. D. Ferraris and S. R. Palumbi, eds. Molecular zoology: advances, strategies and protocols. Wiley-Liss, New York.
28. Hugall, A., C. Moritz, A. Moussalli, and J. Stanisic. 2002. Reconciling paleodistribution models and comparative phylogeography in the Wet Tropics rainforest land snail Gnarosophia bellendenkerensis (Brazier 1875). Proc. Natl. Acad. Sci. USA 99 : 6112 6117.
29. Jacquez, G. M. 1995. The map comparison problem: tests for the overlap of geographic boundaries. Stat. Med. 14 : 2343 2361.
30. Jacquez, G. M., S. Maruca, and M.-J. Fortin. 2000. From fields to objects: a review of geographic boundary analysis. J. Geogr. Syst. 2 : 221 241.
31. Kershaw, A. P., D. M. D'Costa, J. R. C. McEwen Mason, and B. E. Wagstaff. 1991. Palynological evidence for Quaternary vegetation and environments of mainland southeastern Australia. Quaternary Sci. Rev. 10 : 391 404.
32. Knowles, L. L. 2001. Did the Pleistocene glaciations promote divergence? Tests of explicit refugial models in montane grasshoppers. Mol. Ecol. 10 : 691 701.
33. Knowles, L. L. 2004. The burgeoning field of statistical phylogeography. J. Evol. Biol. 17 : 1 10.
34. Knowles, L. L., and W. P. Maddison. 2002. Statistical phylogeography. Mol. Ecol. 11 : 2623 2535.
35. Kohlmann, B., H. Nix, and D. D. Shaw. 1988. Environmental predictions and distributional limits of chromosomal taxa in the Australian grasshopper Caledia captiva (F.). Oecologia 75 : 483 493.
36. Lapointe, F-J., and L. J. Rissler. 2005. Congruence, consensus, and comparative phylogeography of codistributed species in California. Am. Nat. 166 : 290 299.
37. Lunt, D. H., D-X. Zhang, J. M. Szymura, and G. M. Hewitt. 1996. The insect cytochrome oxidase I gene: evolutionary patterns and conserved primers for phylogenetic studies. Insect Mol. Biol. 5 : 153 165.
38. Maddison, W. P. and L. L. Knowles. 2006. Inferring phylogeny despite incomplete lineage sorting. Syst. Biol. 55 : 21 30.
39. Maddison, W. P., and D. R. Maddison. 2005. Mesquite: a modular system for evolutionary analysis. http://mesquiteproject.org
40. Masta, S. E., and W. P. Maddison. 2002. Sexual selection driving diversification in jumping spiders. Proc. Natl. Acad. Sci. USA 99 : 4442 4447.
41. Moritz, C., K. S. Richardson, S. Ferrier, G. B. Monteith, J. Stanisic, S. E. Williams, and T. Whiffin. 2001. Biogeographical concordance and efficiency of taxon indicators for establishing conservation priority in a tropical rainforest biota. Proc. R. Soc. Lond. B 268 : 1875 1881.
42. Oden, N. L., R. R. Sokal, M.-J. Fortin, and H. Goebl. 1993. Categorical wombling: Detecting regions of significant change in spatially located categorical variables. Geogr. Anal. 25 : 315 336.
43. Panchal, M. and M. A. Beaumont. 2007. The automation and evaluation of nested clade phylogeographic analysis. Evolution 61 : 1466 1480.
44. Pfenninger, M., and D. Posada. 2002. Phylogeographic history of the land snail Candidula unifasciata (Helicellinae, Stylommatophora): fragmentation, corridor migration, and secondary contact. Evolution 56 : 1776 1788.
45. Posada, D., and K. A. Crandall. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14 : 817 818.
46. Posada, D., K. A. Crandall, and A. R. Templeton. 2000. GeoDis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Mol. Ecol. 9 : 487 488.
47. Pritchard, J. K., M. Stevens, and P. Donnelly. 2000. Inference of population structure using multilocus genotype data. Genetics 155 : 945 959.
48. Reinhard, J., and D. M. Rowell. 2005. Social behaviour in an Australian velvet worm, Euperipatoides rowelli (Onychophora: Peripatopsidae). J. Zool. 267 : 1 7.
49. Schaefer, J. A. 2006. Towards maturation of the population concept. Oikos 112 : 236 240.
50. Scott, I. A. W., and D. M. Rowell. 1991. The population biology of Euperipatoides leuckartii (Onychophora: Peripatopsidae). Aust. J. Zool. 39 : 499 508.
51. State Forests of New South Wales. 1995. Proposed forestry operations in the Queanbeyan and Badja management area, environmental impact statement. State Forests of New South Wales, Southern Region, Pennant Hills.
52. Sullivan, J., E. Arellano, and D. S. Rogers. 2000. Comparative phylogeography of Mesoamerican highland rodents: concerted versus independent response to past climatic fluctuations. Am. Nat. 155 : 755 768.
53. Sunnucks, P. 2000. Efficient genetic markers for population biology. Trends Ecol. Evol. 15 : 199 203.
54. Sunnucks, P., and N. Tait. 2001. Velvet worms: tales of the unexpected. Nat. Aust. 27 : 61 69.
55. Sunnucks, P., and A. C. C. Wilson. 1999. Microsatellite markers for the onychophoran Euperipatoides rowelli. Mol. Ecol. 8 : 895 906.
56. Sunnucks, P., N. Curach, A. Young, J. French, R. Cameron, D. A. Briscoe, and N. N. Tait. 2000a. Reproductive biology of the onychophoran Euperipatoides rowelli. J. Zool. 250 : 447 460.
57. Sunnucks, P., A. C. C. Wilson, L. B. Beheregaray, K. Zenger, J. French, and A. C. Taylor. 2000b. SSCP is not so difficult: the application and utility of single-stranded conformation polymorphism in evolutionary biology and molecular ecology. Mol. Ecol. 9 : 1699 1710.
58. Sunnucks, P., M. J. Blacket, J. M. Taylor, C. J. Sands, S. A. Ciavaglia, R. C. Garrick, N. N. Tait, D. M. Rowell, and A. Pavlova. 2006. A tale of two flatties: different responses of two terrestrial flatworms to past environmental climatic fluctuations at Tallaganda in montane southeastern Australia. Mol. Ecol. 15 : 4513 4531.
59. Swofford, D. L. 2002. PAUP*: phylogenetic analysis using parsimony (* and other methods). Sinauer, Sunderland, MA.
60. Swofford, D. L., G. J. Olsen, P. J. Waddell, and D. M. Hillis. 1996. Phylogenetic inference. Pp. 407 514 in D. M. Hillis, C. Moritz, and B. Mable, eds. Molecular systematics. Sinauer, Sunderland, MA.
61. Templeton, A. R. 2002. Out of Africa again and again. Nature 416 : 45 51.
62. Templeton, A. R. 2004. Statistical phylogeography: methods for evaluating and minimizing inference errors. Mol. Ecol. 13 : 789 809.
63. Templeton, A. R., K. A. Crandall, and C. F. Sing. 1992. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics 132 : 619 633.
64. Templeton, A. R., E. Routman, and C. A. Phillips. 1995. Separating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander Ambystoma tigrinum. Genetics 140 : 767 782.
65. Woodman, J. D., J. E. Ash, and D. M. Rowell. 2006. Population structure in a saproxylic funnelweb spider (Hexathelidae: Hadronyche) along a forested rainfall gradient. J. Zool. 268 : 325 333.