-
1
-
-
17644369248
-
The MexGHI-OpmD multidrug efflux pump controls growth, antibiotic susceptibility and virulence in Pseudomonas aeruginosa via 4-quinolone-dependent cell-to-cell communication
-
Aendekerk, S., Diggle, S.P., Song, Z., Høiby, N., Cornelis, P., Williams, P., and Cámara, M. (2005) The MexGHI-OpmD multidrug efflux pump controls growth, antibiotic susceptibility and virulence in Pseudomonas aeruginosa via 4-quinolone-dependent cell-to-cell communication. Microbiology 151: 1113-1125.
-
(2005)
Microbiology
, vol.151
, pp. 1113-1125
-
-
Aendekerk, S.1
Diggle, S.P.2
Song, Z.3
Høiby, N.4
Cornelis, P.5
Williams, P.6
Cámara, M.7
-
2
-
-
1042264075
-
Protein sequence databases
-
Apweiler, R., Bairoch, A., and Wu, C.H. (2004) Protein sequence databases. Curr Opin Chem Biol 8: 76-80.
-
(2004)
Curr Opin Chem Biol
, vol.8
, pp. 76-80
-
-
Apweiler, R.1
Bairoch, A.2
Wu, C.H.3
-
3
-
-
84883268954
-
Pouring salt on a wound: Pseudomonas aeruginosa virulence factors alter Na+ and Cl- flux in the lung
-
Ballok, A.E., and O'Toole, G.A. (2013) Pouring salt on a wound: Pseudomonas aeruginosa virulence factors alter Na+ and Cl- flux in the lung. J Bacteriol 195: 4013-4019.
-
(2013)
J Bacteriol
, vol.195
, pp. 4013-4019
-
-
Ballok, A.E.1
O'Toole, G.A.2
-
4
-
-
84879092093
-
Intraclonal genome diversity of Pseudomonas aeruginosa clones CHA and TB
-
Bezuidt, O.K., Klockgether, J., Elsen, S., Attree, I., Davenport, C.F., and Tümmler, B. (2013) Intraclonal genome diversity of Pseudomonas aeruginosa clones CHA and TB. BMC Genomics 14: 416.
-
(2013)
BMC Genomics
, vol.14
, pp. 416
-
-
Bezuidt, O.K.1
Klockgether, J.2
Elsen, S.3
Attree, I.4
Davenport, C.F.5
Tümmler, B.6
-
5
-
-
80052684904
-
In-vivo expression profiling of Pseudomonas aeruginosa infections reveals niche-specific and strain-independent transcriptional programs
-
Bielecki, P., Puchalka, J., Wos-Oxley, M.L., Loessner, H., Glik, J., Kawecki, M., etal. (2011) In-vivo expression profiling of Pseudomonas aeruginosa infections reveals niche-specific and strain-independent transcriptional programs. PLoS ONE 6: e24235.
-
(2011)
PLoS ONE
, vol.6
, pp. e24235
-
-
Bielecki, P.1
Puchalka, J.2
Wos-Oxley, M.L.3
Loessner, H.4
Glik, J.5
Kawecki, M.6
-
6
-
-
67649159262
-
EDGAR: a software framework for the comparative analysis of prokaryotic genomes
-
Blom, J., Albaum, S.P., Doppmeier, D., Pühler, A., Vorhölter, F.J., Zakrzewski, M., and Goesmann, A. (2009) EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics 10: 154.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 154
-
-
Blom, J.1
Albaum, S.P.2
Doppmeier, D.3
Pühler, A.4
Vorhölter, F.J.5
Zakrzewski, M.6
Goesmann, A.7
-
7
-
-
79955767858
-
Exact and complete short-read alignment to microbial genomes using graphics processing unit programming
-
Blom, J., Jakobi, T., Doppmeier, D., Jaenicke, S., Kalinowski, J., Stoye, J., and Goesmann, A. (2011) Exact and complete short-read alignment to microbial genomes using graphics processing unit programming. Bioinformatics 27: 1351-1358.
-
(2011)
Bioinformatics
, vol.27
, pp. 1351-1358
-
-
Blom, J.1
Jakobi, T.2
Doppmeier, D.3
Jaenicke, S.4
Kalinowski, J.5
Stoye, J.6
Goesmann, A.7
-
8
-
-
58449101337
-
Multiple roles of Pseudomonas aeruginosa TBCF10839 PilY1 in motility, transport and infection
-
Bohn, Y.S., Brandes, G., Rakhimova, E., Horatzek, S., Salunkhe, P., Munder, A., etal. (2009) Multiple roles of Pseudomonas aeruginosa TBCF10839 PilY1 in motility, transport and infection. Mol Microbiol 71: 730-747.
-
(2009)
Mol Microbiol
, vol.71
, pp. 730-747
-
-
Bohn, Y.S.1
Brandes, G.2
Rakhimova, E.3
Horatzek, S.4
Salunkhe, P.5
Munder, A.6
-
9
-
-
84891699352
-
Pseudomonas aeruginosa Cif enhances the ubiquitination and proteasomal degradation of the transporter associated with antigen processing (TAP) and reduces MHC class I antigen presentation
-
Bomberger, J.M., Ely, K.H., Bangia, N., Ye, S., Green, K.A., Green, W.R., etal. (2014) Pseudomonas aeruginosa Cif enhances the ubiquitination and proteasomal degradation of the transporter associated with antigen processing (TAP) and reduces MHC class I antigen presentation. J Biol Chem 289: 152-162.
-
(2014)
J Biol Chem
, vol.289
, pp. 152-162
-
-
Bomberger, J.M.1
Ely, K.H.2
Bangia, N.3
Ye, S.4
Green, K.A.5
Green, W.R.6
-
10
-
-
84872607723
-
Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system
-
Bondy-Denomy, J., Pawluk, A., Maxwell, K.L., and Davidson, A.R. (2013) Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system. Nature 493: 429-432.
-
(2013)
Nature
, vol.493
, pp. 429-432
-
-
Bondy-Denomy, J.1
Pawluk, A.2
Maxwell, K.L.3
Davidson, A.R.4
-
11
-
-
84862506964
-
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
-
Cingolani, P., Platts, A., Wang le, L., Coon, M., Nguyen, T., Wang, L., etal. (2012) A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. Fly (Austin) 6: 80-92.
-
(2012)
Fly (Austin)
, vol.6
, pp. 80-92
-
-
Cingolani, P.1
Platts, A.2
Wang le, L.3
Coon, M.4
Nguyen, T.5
Wang, L.6
-
12
-
-
84870341542
-
Molecular epidemiology of chronic Pseudomonas aeruginosa airway infections in cystic fibrosis
-
Cramer, N., Wiehlmann, L., Ciofu, O., Tamm, S., Høiby, N., and Tümmler, B. (2012) Molecular epidemiology of chronic Pseudomonas aeruginosa airway infections in cystic fibrosis. PLoS ONE 7: e50731.
-
(2012)
PLoS ONE
, vol.7
, pp. e50731
-
-
Cramer, N.1
Wiehlmann, L.2
Ciofu, O.3
Tamm, S.4
Høiby, N.5
Tümmler, B.6
-
13
-
-
78650018649
-
Differential adaptation of microbial pathogens to airways of patients with cystic fibrosis and chronic obstructive pulmonary disease
-
Döring, G., Parameswaran, I.G., and Murphy, T.F. (2011) Differential adaptation of microbial pathogens to airways of patients with cystic fibrosis and chronic obstructive pulmonary disease. FEMS Microbiol Rev 35: 124-146.
-
(2011)
FEMS Microbiol Rev
, vol.35
, pp. 124-146
-
-
Döring, G.1
Parameswaran, I.G.2
Murphy, T.F.3
-
14
-
-
1342304133
-
eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data
-
Feil, E.J., Li, B.C., Aanensen, D.M., Hanage, W.P., and Spratt, B.G. (2004) eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J Bacteriol 186: 1518-1530.
-
(2004)
J Bacteriol
, vol.186
, pp. 1518-1530
-
-
Feil, E.J.1
Li, B.C.2
Aanensen, D.M.3
Hanage, W.P.4
Spratt, B.G.5
-
15
-
-
0002075578
-
Basic prerequisites for cellular life
-
In Lengeler, J.W., Drews, G., and Schlegel, H.G. (eds). Stuttgart, Germany: Thieme
-
Fuchs, G. (1999) Basic prerequisites for cellular life. In Biology of the Prokaryotes. Lengeler, J.W., Drews, G., and Schlegel, H.G. (eds). Stuttgart, Germany: Thieme, pp. 110-160.
-
(1999)
Biology of the Prokaryotes
, pp. 110-160
-
-
Fuchs, G.1
-
16
-
-
0034274870
-
An open graph visualization system and its applications to software engineering
-
Gansner, E.R., and North, S.C. (2000) An open graph visualization system and its applications to software engineering. Software Pract Exper 30: 1203-1233.
-
(2000)
Software Pract Exper
, vol.30
, pp. 1203-1233
-
-
Gansner, E.R.1
North, S.C.2
-
17
-
-
24144496062
-
Graph drawing by stress majorization
-
Gansner, E.R., Koren, Y., and North, S.C. (2005) Graph drawing by stress majorization. Lect Notes Comput Sc 3383: 239-250.
-
(2005)
Lect Notes Comput Sc
, vol.3383
, pp. 239-250
-
-
Gansner, E.R.1
Koren, Y.2
North, S.C.3
-
18
-
-
64049100831
-
The sensor kinase PhoQ mediates virulence in Pseudomonas aeruginosa
-
Gooderham, W.J., Gellatly, S.L., Sanschagrin, F., McPhee, J.B., Bains, M., Cosseau, C., etal. (2009) The sensor kinase PhoQ mediates virulence in Pseudomonas aeruginosa. Microbiology 155: 699-711.
-
(2009)
Microbiology
, vol.155
, pp. 699-711
-
-
Gooderham, W.J.1
Gellatly, S.L.2
Sanschagrin, F.3
McPhee, J.B.4
Bains, M.5
Cosseau, C.6
-
19
-
-
0035283754
-
How to optimize the drop plate method for enumerating bacteria
-
Herigstad, B., Hamilton, M., and Heersink, J. (2001) How to optimize the drop plate method for enumerating bacteria. J Microbiol Methods 44: 121-129.
-
(2001)
J Microbiol Methods
, vol.44
, pp. 121-129
-
-
Herigstad, B.1
Hamilton, M.2
Heersink, J.3
-
20
-
-
84906239448
-
ReadXplorer-visualization and analysis of mapped sequences
-
Hilker, R., Stadermann, K.B., Doppmeier, D., Kalinowski, J., Stoye, J., Straube, J., etal. (2014) ReadXplorer-visualization and analysis of mapped sequences. Bioinformatics 30: 2247-2254.
-
(2014)
Bioinformatics
, vol.30
, pp. 2247-2254
-
-
Hilker, R.1
Stadermann, K.B.2
Doppmeier, D.3
Kalinowski, J.4
Stoye, J.5
Straube, J.6
-
21
-
-
77949515650
-
r2cat: synteny plots and comparative assembly
-
Husemann, P., and Stoye, J. (2010) r2cat: synteny plots and comparative assembly. Bioinformatics 26: 570-571.
-
(2010)
Bioinformatics
, vol.26
, pp. 570-571
-
-
Husemann, P.1
Stoye, J.2
-
22
-
-
77952299957
-
Prodigal: prokaryotic gene recognition and translation initiation site identification
-
Hyatt, D., Chen, G.L., Locascio, P.F., Land, M.L., Larimer, F.W., and Hauser, L.J. (2010) Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11: 119.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 119
-
-
Hyatt, D.1
Chen, G.L.2
Locascio, P.F.3
Land, M.L.4
Larimer, F.W.5
Hauser, L.J.6
-
24
-
-
33947108811
-
Diversity of the abundant pKLC102/PAGI-2 family of genomic islands in Pseudomonas aeruginosa
-
Klockgether, J., Würdemann, D., Reva, O., Wiehlmann, L., and Tümmler, B. (2007) Diversity of the abundant pKLC102/PAGI-2 family of genomic islands in Pseudomonas aeruginosa. J Bacteriol 189: 2443-2459.
-
(2007)
J Bacteriol
, vol.189
, pp. 2443-2459
-
-
Klockgether, J.1
Würdemann, D.2
Reva, O.3
Wiehlmann, L.4
Tümmler, B.5
-
25
-
-
84859103889
-
Pseudomonas aeruginosa genomic structure and diversity
-
Klockgether, J., Cramer, N., Wiehlmann, L., Davenport, C.F., and Tümmler, B. (2011) Pseudomonas aeruginosa genomic structure and diversity. Front Microbiol 2: 150.
-
(2011)
Front Microbiol
, vol.2
, pp. 150
-
-
Klockgether, J.1
Cramer, N.2
Wiehlmann, L.3
Davenport, C.F.4
Tümmler, B.5
-
26
-
-
84925883695
-
Assessing Pseudomonas virulence with nonmammalian host: Galleria mellonella
-
Koch, G., Nadal-Jimenez, P., Cool, R.H., and Quax, W.J. (2014) Assessing Pseudomonas virulence with nonmammalian host: Galleria mellonella. Methods Mol Biol 1149: 681-688.
-
(2014)
Methods Mol Biol
, vol.1149
, pp. 681-688
-
-
Koch, G.1
Nadal-Jimenez, P.2
Cool, R.H.3
Quax, W.J.4
-
27
-
-
84877267452
-
Evolution of microbes and viruses: a paradigm shift in evolutionary biology?
-
Koonin, E.V., and Wolf, Y.I. (2012) Evolution of microbes and viruses: a paradigm shift in evolutionary biology? Front Cell Infect Microbiol 2: 119.
-
(2012)
Front Cell Infect Microbiol
, vol.2
, pp. 119
-
-
Koonin, E.V.1
Wolf, Y.I.2
-
28
-
-
33750924336
-
Genomic analysis reveals that Pseudomonas aeruginosa virulence is combinatorial
-
Lee, D.G., Urbach, J.M., Wu, G., Liberati, N.T., Feinbaum, R.L., Miyata, S., etal. (2006) Genomic analysis reveals that Pseudomonas aeruginosa virulence is combinatorial. Genome Biol 7: R90.
-
(2006)
Genome Biol
, vol.7
, pp. R90
-
-
Lee, D.G.1
Urbach, J.M.2
Wu, G.3
Liberati, N.T.4
Feinbaum, R.L.5
Miyata, S.6
-
29
-
-
77955929990
-
Identification of the biosynthetic gene cluster for the Pseudomonas aeruginosa antimetabolite L-2-amino-4-methoxy-trans-3-butenoic acid
-
Lee, X., Fox, A., Sufrin, J., Henry, H., Majcherczyk, P., Haas, D., and Reimmann, C. (2010) Identification of the biosynthetic gene cluster for the Pseudomonas aeruginosa antimetabolite L-2-amino-4-methoxy-trans-3-butenoic acid. J Bacteriol 192: 4251-4255.
-
(2010)
J Bacteriol
, vol.192
, pp. 4251-4255
-
-
Lee, X.1
Fox, A.2
Sufrin, J.3
Henry, H.4
Majcherczyk, P.5
Haas, D.6
Reimmann, C.7
-
30
-
-
1342271382
-
From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-proteobacteria
-
Lerat, E., Daubin, V., and Moran, N.A. (2003) From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-proteobacteria. PLoS Biol 1: E19.
-
(2003)
PLoS Biol
, vol.1
, pp. E19
-
-
Lerat, E.1
Daubin, V.2
Moran, N.A.3
-
31
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H., and Durbin, R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
32
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., etal. (2009) The sequence alignment/map format and SAMtools. Bioinformatics 25: 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
-
33
-
-
79956307251
-
Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads
-
Lunter, G., and Goodson, M. (2011) Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads. Genome Res 21: 936-939.
-
(2011)
Genome Res
, vol.21
, pp. 936-939
-
-
Lunter, G.1
Goodson, M.2
-
34
-
-
33750290454
-
Multilocus sequence typing of bacteria
-
Maiden, M.C. (2006) Multilocus sequence typing of bacteria. Annu Rev Microbiol 60: 561-588.
-
(2006)
Annu Rev Microbiol
, vol.60
, pp. 561-588
-
-
Maiden, M.C.1
-
35
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies, M., Egholm, M., Altman, W.E., Attiya, S., Bader, J.S., Bemben, L.A., etal. (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437: 376-380.
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
Bemben, L.A.6
-
36
-
-
42949094250
-
Dynamics of Pseudomonas aeruginosa genome evolution
-
Mathee, K., Narasimhan, G., Valdes, C., Qiu, X., Matewish, J.M., Koehrsen, M., etal. (2008) Dynamics of Pseudomonas aeruginosa genome evolution. Proc Natl Acad Sci USA 105: 3100-3105.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 3100-3105
-
-
Mathee, K.1
Narasimhan, G.2
Valdes, C.3
Qiu, X.4
Matewish, J.M.5
Koehrsen, M.6
-
37
-
-
0037561991
-
GenDB - an open source genome annotation system for prokaryote genomes
-
Meyer, F., Goesmann, A., McHardy, A.C., Bartels, D., Bekel, T., Clausen, J., etal. (2003) GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Res 31: 2187-2195.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 2187-2195
-
-
Meyer, F.1
Goesmann, A.2
McHardy, A.C.3
Bartels, D.4
Bekel, T.5
Clausen, J.6
-
38
-
-
21144446702
-
Murine pulmonary infection with Listeria monocytogenes: differential susceptibility of BALB/c, C57BL/6 and DBA/2 mice
-
Munder, A., Zelmer, A., Schmiedl, A., Dittmar, K.E., Rohde, M., Dorsch, M., etal. (2005) Murine pulmonary infection with Listeria monocytogenes: differential susceptibility of BALB/c, C57BL/6 and DBA/2 mice. Microbes Infect 7: 600-611.
-
(2005)
Microbes Infect
, vol.7
, pp. 600-611
-
-
Munder, A.1
Zelmer, A.2
Schmiedl, A.3
Dittmar, K.E.4
Rohde, M.5
Dorsch, M.6
-
39
-
-
70849094620
-
Pseudomonas aeruginosa population structure revisited
-
Pirnay, J.P., Bilocq, F., Pot, B., Cornelis, P., Zizi, M., Van Eldere, J., etal. (2009) Pseudomonas aeruginosa population structure revisited. PLoS ONE 4: e7740.
-
(2009)
PLoS ONE
, vol.4
, pp. e7740
-
-
Pirnay, J.P.1
Bilocq, F.2
Pot, B.3
Cornelis, P.4
Zizi, M.5
Van Eldere, J.6
-
40
-
-
84873115953
-
The peptide chain release factor methyltransferase PrmC is essential for pathogenicity and environmental adaptation of Pseudomonas aeruginosa PA14
-
Pustelny, C., Brouwer, S., Müsken, M., Bielecka, A., Dötsch, A., Nimtz, M., etal. (2013) The peptide chain release factor methyltransferase PrmC is essential for pathogenicity and environmental adaptation of Pseudomonas aeruginosa PA14. Environ Microbiol 15: 597-609.
-
(2013)
Environ Microbiol
, vol.15
, pp. 597-609
-
-
Pustelny, C.1
Brouwer, S.2
Müsken, M.3
Bielecka, A.4
Dötsch, A.5
Nimtz, M.6
-
41
-
-
77951770756
-
BEDTools: a flexible suite of utilities for comparing genomic features
-
Quinlan, A.R., and Hall, I.M. (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26: 841-842.
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
42
-
-
0029035765
-
Common virulence factors for bacterial pathogenicity in plants and animals
-
Rahme, L.G., Stevens, E.J., Wolfort, S.F., Shao, J., Tompkins, R.G., and Ausubel, F.M. (1995) Common virulence factors for bacterial pathogenicity in plants and animals. Science 268: 1899-1902.
-
(1995)
Science
, vol.268
, pp. 1899-1902
-
-
Rahme, L.G.1
Stevens, E.J.2
Wolfort, S.F.3
Shao, J.4
Tompkins, R.G.5
Ausubel, F.M.6
-
43
-
-
84920091516
-
-
New York, USA: Plenum Press. 1-3
-
Ramos, J.L. (ed.) (2004-2010a) Pseudomonas. Vol. 1-3. New York, USA: Plenum Press.
-
(2004)
Pseudomonas
-
-
Ramos, J.L.1
-
44
-
-
84920107900
-
-
Heidelberg, Germany: Springer.
-
Ramos, J.L. (ed.) (2004-2010b) Pseudomonas. Vol. 4-6. Heidelberg, Germany: Springer.
-
(2004)
Pseudomonas
, vol.4
-
-
Ramos, J.L.1
-
45
-
-
20444457605
-
Worldwide distribution of Pseudomonas aeruginosa clone C strains in the aquatic environment and cystic fibrosis patients
-
Römling, U., Kader, A., Sriramulu, D.D., Simm, R., and Kronvall, G. (2005) Worldwide distribution of Pseudomonas aeruginosa clone C strains in the aquatic environment and cystic fibrosis patients. Environ Microbiol 7: 1029-1038.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1029-1038
-
-
Römling, U.1
Kader, A.2
Sriramulu, D.D.3
Simm, R.4
Kronvall, G.5
-
46
-
-
84864387005
-
Pseudomonas aeruginosa population structure revisited under environmental focus: impact of water quality and phage pressure
-
Selezska, K., Kazmierczak, M., Müsken, M., Garbe, J., Schobert, M., Häussler, S., etal. (2012) Pseudomonas aeruginosa population structure revisited under environmental focus: impact of water quality and phage pressure. Environ Microbiol 14: 1952-1967.
-
(2012)
Environ Microbiol
, vol.14
, pp. 1952-1967
-
-
Selezska, K.1
Kazmierczak, M.2
Müsken, M.3
Garbe, J.4
Schobert, M.5
Häussler, S.6
-
47
-
-
59849121929
-
Modeling Pseudomonas aeruginosa pathogenesis in plant hosts
-
Starkey, M., and Rahme, L.G. (2009) Modeling Pseudomonas aeruginosa pathogenesis in plant hosts. Nat Protoc 4: 117-124.
-
(2009)
Nat Protoc
, vol.4
, pp. 117-124
-
-
Starkey, M.1
Rahme, L.G.2
-
48
-
-
0034739007
-
Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen
-
Stover, C.K., Pham, X.Q., Erwin, A.L., Mizoguchi, S.D., Warrener, P., Hickey, M.J., etal. (2000) Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen. Nature 406: 959-964.
-
(2000)
Nature
, vol.406
, pp. 959-964
-
-
Stover, C.K.1
Pham, X.Q.2
Erwin, A.L.3
Mizoguchi, S.D.4
Warrener, P.5
Hickey, M.J.6
-
49
-
-
84875634162
-
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
-
Thorvaldsdóttir, H., Robinson, J.T., and Mesirov, J.P. (2013) Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief Bioinform 14: 178-192.
-
(2013)
Brief Bioinform
, vol.14
, pp. 178-192
-
-
Thorvaldsdóttir, H.1
Robinson, J.T.2
Mesirov, J.P.3
-
51
-
-
84894243980
-
Differential potentiation of the virulence of the Pseudomonas aeruginosa cystic fibrosis liverpool epidemic strain by oral commensal Streptococci
-
Whiley, R.A., Sheikh, N.P., Mushtaq, N., Hagi-Pavli, E., Personne, Y., Javaid, D., and Waite, R.D. (2014) Differential potentiation of the virulence of the Pseudomonas aeruginosa cystic fibrosis liverpool epidemic strain by oral commensal Streptococci. J Infect Dis 209: 769-780.
-
(2014)
J Infect Dis
, vol.209
, pp. 769-780
-
-
Whiley, R.A.1
Sheikh, N.P.2
Mushtaq, N.3
Hagi-Pavli, E.4
Personne, Y.5
Javaid, D.6
Waite, R.D.7
-
52
-
-
34249946313
-
Population structure of Pseudomonas aeruginosa
-
Wiehlmann, L., Wagner, G., Cramer, N., Siebert, B., Gudowius, P., Morales, G., etal. (2007) Population structure of Pseudomonas aeruginosa. Proc Natl Acad Sci USA 104: 8101-8106.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 8101-8106
-
-
Wiehlmann, L.1
Wagner, G.2
Cramer, N.3
Siebert, B.4
Gudowius, P.5
Morales, G.6
-
53
-
-
78651267246
-
Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes
-
Winsor, G.L., Lam, D.K., Fleming, L., Lo, R., Whiteside, M.D., Yu, N.Y., etal. (2011) Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes. Nucleic Acids Res 39 (Database issue): D596-D600.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.DATABASE ISSUE
, pp. D596-D600
-
-
Winsor, G.L.1
Lam, D.K.2
Fleming, L.3
Lo, R.4
Whiteside, M.D.5
Yu, N.Y.6
-
54
-
-
61449134105
-
Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa
-
Winstanley, C., Langille, M.G., Fothergill, J.L., Kukavica-Ibrulj, I., Paradis-Bleau, C., Sanschagrin, F., etal. (2009) Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa. Genome Res 19: 12-23.
-
(2009)
Genome Res
, vol.19
, pp. 12-23
-
-
Winstanley, C.1
Langille, M.G.2
Fothergill, J.L.3
Kukavica-Ibrulj, I.4
Paradis-Bleau, C.5
Sanschagrin, F.6
-
55
-
-
77957002483
-
Head-out spirometry accurately monitors the course of Pseudomonas aeruginosa lung infection in mice
-
Wölbeling, F., Munder, A., Stanke, F., Tümmler, B., and Baumann, U. (2010) Head-out spirometry accurately monitors the course of Pseudomonas aeruginosa lung infection in mice. Respiration 80: 340-346.
-
(2010)
Respiration
, vol.80
, pp. 340-346
-
-
Wölbeling, F.1
Munder, A.2
Stanke, F.3
Tümmler, B.4
Baumann, U.5
-
56
-
-
79959532400
-
Lung function and inflammation during murine Pseudomonas aeruginosa airway infection
-
Wölbeling, F., Munder, A., Kerber-Momot, T., Neumann, D., Hennig, C., Hansen, G., etal. (2011) Lung function and inflammation during murine Pseudomonas aeruginosa airway infection. Immunobiology 216: 901-908.
-
(2011)
Immunobiology
, vol.216
, pp. 901-908
-
-
Wölbeling, F.1
Munder, A.2
Kerber-Momot, T.3
Neumann, D.4
Hennig, C.5
Hansen, G.6
-
57
-
-
34147161055
-
Regulatory role of PopN and its interacting partners in type III secretion of Pseudomonas aeruginosa
-
Yang, H., Shan, Z., Kim, J., Wu, W., Lian, W., Zeng, L., etal. (2007) Regulatory role of PopN and its interacting partners in type III secretion of Pseudomonas aeruginosa. J Bacteriol 189: 2599-2609.
-
(2007)
J Bacteriol
, vol.189
, pp. 2599-2609
-
-
Yang, H.1
Shan, Z.2
Kim, J.3
Wu, W.4
Lian, W.5
Zeng, L.6
-
58
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino, D.R., and Birney, E. (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18: 821-829.
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
59
-
-
77957325042
-
Plant immunity triggered by microbial molecular signatures
-
Zhang, J., and Zhou, J.M. (2010) Plant immunity triggered by microbial molecular signatures. Mol Plant 3: 783-793.
-
(2010)
Mol Plant
, vol.3
, pp. 783-793
-
-
Zhang, J.1
Zhou, J.M.2
|