Epidemiology of Dickeya dianthicola and Dickeya solani in ornamental hosts and potato studied using variable number tandem repeat analysis

European Journal of Plant Pathology

Volumn 141, Issue 1, 2015, Pages 63-70

  Parkinson, Neil ^a   Pritchard, Leighton ^b   Bryant, Ruth ^c   Toth, Ian ^b   Elphinstone, John ^a  

^a FOOD AND ENVIRONMENT RESEARCH AGENCY   (United Kingdom)

^b SCOTTISH CROP RESEARCH INSTITUTE   (United Kingdom)

^c RAGT Seeds Ltd   (United Kingdom)

Author keywords

Dickeya dianthicola; Dickeya solani; Epidemiology; VNTR

Indexed keywords

BACTERIAL DISEASE; EMERGENCE; EPIDEMIOLOGY; HORTICULTURE; INFECTIOUS DISEASE; ORNAMENTAL SPECIES; PATHOGENICITY; POTATO; SPECIES DIVERSITY;

EUROPE;

CHRYSANTHEMUM X MORIFOLIUM; DIANTHUS CARYOPHYLLUS; DICKEYA; DICKEYA DIANTHICOLA; HYACINTHUS; SOLANUM TUBEROSUM;

EID: 85027917093     PISSN: 09291873     EISSN: 15738469     Source Type: Journal    
DOI: 10.1007/s10658-014-0523-5     Document Type: Article

References (32)

1. Brady, C., Cleenwerck, I., Denman, S., Venter, S., Rodríguez-Palenzuela, P., Coutinho, T. A., & de Vos, P. (2012). Proposal to reclassify Brenneria quercina (Hildebrand & Schroth 1967) Hauben et al. 1999 into a novel genus, Lonsdalea gen. nov., as Lonsdalea quercina comb. nov., descriptions of Lonsdalea quercina subsp. quercina comb. nov., Lonsdalea quercina subsp. iberica subsp. nov. and Lonsdalea quercina subsp. britannica subsp. nov., emendation of the description of the genus Brenneria, reclassification of Dickeya dieffenbachiae as Dickeya dadantii subsp. dieffenbachiae comb. nov., and emendation of the description of Dickeya dadantii. International Journal of Systematic and Evolutionary Microbiology, 62, 1592–1602.
2. Burkholder, W. H., McFadden, L. A., & Dimock, A. W. (1953). A bacterial blight of chrysanthemums. Phytopathology, 43, 522–526.
3. Coletta-Filho, H. D., Takita, M. A., de Souza, A. A., Aguilar-Vildoso, C. I., & Machado, M. A. (2001). Differentiation of strains of Xylella fastidiosa by a variable number of tandem repeat analysis. Applied and Environmental Microbiology, 67, 4091–4095.
4. Czajkowski, R., Perombelon, M. C. M., van Veen, J. A., & van der Wolf, J. M. (2011). Control of blackleg and tuber soft rot of potato caused by Pectobacterium and Dickeya species: a review. Plant Pathology, 60, 999–1013.
5. Czajkowski, R., de Boer, W. J., van der Zouwen, P. S., Kastelein, P., Jafra, S., de Haan, E. G., et al. (2013). Virulence of Dickeya solani’ and Dickeya dianthicola biovar-1 and-7 strains on potato (Solanum tuberosum). Plant Pathology, 62, 597–610.
6. Degefu, Y., Potrykus, M., Golanowska, M., Virtanen, E., & Lojkowska, E. (2013). A new clade of Dickeya spp. plays a major role in potato blackleg outbreaks in North Finland. Annals of Applied Biology, 162, 231–241.
7. Doorn, J. V., Vreeburg, P., Leeuwen, P. V., Dees, R., & Martin, W. (2009). Erwinia rot for the bulb grower Erwinia: rot voor de bollenteler. Gewasbescherming, 40, 200–204.
8. Doorn, J. V., Vreeburg, P. J. M., Leeuwen, P. J. V., & Dees, R. H. L. (2011). The presence and survival of soft rot (Erwinia) in flower bulb production systems. (Conference X International Symposium on flower bulbs and herbaceous perennials Lisse, Netherlands). Acta Horticulturae, 886, 363–377.
9. Elphinstone, J.G., Parkinson, N.M., Saddler, G.S., Cahill, G., Kelly, R., Pritchard, L. et al. (2014). Biology and control of Dickeya spp. affecting potato in the UK. Proceedings of the Dundee conference Crop Protection in Northern Britain, 235–241.
10. EU. (2000). Council directive 2000/29/29/EC of 8 May 2000 on protective measures against the introduction into the community of organisms harmful to plants or plant products and against their spread within the community. Official Journal of the European Communities, L169, 8–22.
11. Gironde, S., & Manceau, C. (2012). Housekeeping gene sequencing and Multilocus variable-number tandem-repeat analysis to identify subpopulations within pseudomonas syringae pv. Maculicola and pseudomonas syringae pv. Tomato that correlate with host specificity. Applied and Environmental Microbiology, 78, 3266–3279.
12. Hauben, L., Moore, E. R. B., Vauterin, L., Steenackers, M., Mergaert, J., Verdonck, L., & Swings, J. (1998). Phylogenetic position of phytopathogens within the Enterobacteriaceae. Systematic and Applied Microbiology, 21, 384–397.
13. Keim, P., Van Ert, M. N., Pearson, T., Vogler, A. J., Huynh, L. Y., & Wagner, D. M. (2004). Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary time scales. Infection, Genetics and Evolution, 4, 205–213.
14. Kolpakov, R. B., & Kucherov, G. (2003). Mreps: efficient and flexible detection of tandem repeats in DNA. Nucleic Acids Research, 31, 3672–3678.
15. Laurila, J., Ahola, V., Lehtinen, A., Joutsjoki, T., Hannukkala, A., Rahkonen, A., & Pirhonen, M. (2008). Characterization of Dickeya strains isolated from potato and 323 river water samples in Finland. European Journal Plant Pathology, 122, 213–225.
16. Matos, L.A., Hilf, M.E., Chen, J.C. & Folimonova, S.Y. (2013). Validation of ‘variable number of tandem repeat’-based approach for examination of ‘Candidatus Liberibacter asiaticus’ diversity and its applications for the analysis of the pathogen populations in the areas of recent introduction. Plos One, 8.
17. Mazars, E. S., Lesjean, A. L., Banuls, M., Gilbert, V., Vincent, B., Gicquel, M., Locht, T. C., & Supply, P. (2001). High-resolution minisatellite-based typing as a portable approach to global analysis of Mycobacterium tuberculosis molecular epidemiology. Proceedings of the National Academy of Sciences of the United States of America, 98, 1901–1906.
18. Minardi, P., Mazzucchi, U., Beruto, M., Lercari, B., & Mainolfi, P. (1988). A survey of bacterial slow wilt and canker in carnation in Italian nurseries. Bulletin OEPP, 18, 365–368.
19. N’guessan, C. A., Brisse, S., Le Roux-Nio, A. C., Poussier, S., Koné, D., & Wicker, E. (2013). Development of variable number of tandem repeats typing schemes for Ralstonia solanacearum, the agent of bacterial wilt, banana Moko disease and potato brown rot. Microbiological Methods, 92, 366–374.
20. Parkinson, N. M., Stead, D., Bew, J., Heeney, J., Tsor (Lahkim), L., & Elphinstone, J. (2009). Dickeya species relatedness and clade structure determined by comparison of recA sequences. International Journal Systematic Evolutionary Microbiology, 59, 2388–2393.
21. Parkinson, N. M., Bryant, R., Bew, J., Conyers, C., Stones, R., et al. (2013). Application of variable-number tandem-repeat typing to discriminate Ralstonia solanacearum strains associated with english watercourses and disease outbreaks. Applied and Environmental Microbiology, 79, 6016–6022.
22. Pritchard, L., Humphris, S., Saddler, G. S., Parkinson, N. M., Bertrand, V., Elphinstone, J. G., & Toth, I. K. (2013a). Detection of phytopathogens of the genus Dickeya using a PCR primer prediction pipeline for draft bacterial genome sequences. Plant Pathology, 62, 587–596.
23. Pritchard, L., Humphris, S., Baeyen, S., Maes, M., Van Vaerenbergh, J., Elphinstone, J., et al. (2013b). Draft genome sequences of four Dickeya dianthicola and Four Dickeya solani Strains. Genome announcements 1.
24. Ramisse, V., Houssu, P., Hernandez, E., Denoeud, F., Hilaire, V., Lisanti, O., Ramisse, F., Cavallo, J. D., & Vergnaud, G. (2004). Variable number of tandem repeats in Salmonella enterica subsp enterica for typing purposes. Journal of Clinical Microbiology, 42, 5722–5730.
25. Samson, R., Legendre, J. B., Christen, R., Saux, M., Achouak, W., & Gardan, L. (2005). Transfer of Pectobacterium chrysanthemi (Burkholder et al. 1953) Brenner et al. 1973 and Brenneria paradisiaca to the genus Dickeya gen. nov. as Dickeya chrysanthemi comb. nov. and Dickeya paradisiaca comb. nov. and delineation of four novel species, Dickeya dadantii sp. nov., Dickeya dianthicola sp. nov., Dickeya dieffenbachiae sp. nov. and Dickeya zeae sp. nov. International Journal Systematic and Evolutionary Microbioliology, 55, 1415–1427.
26. Slawiak, M., van Beckhoven, J., Speksnijder, A., Czajkowski, R., Grabe, G., & van der Wolf, J. M. (2009a). Biochemical and genetical analysis reveal a new clade of biovar 3 Dickeya spp. strains isolated from potato in Europe. European Journal of Plant Pathology, 125, 245–261.
27. Slawiak, M., Lojkowska, E., & van der Wolf, J. M. (2009b). First report of bacterial soft rot on potato caused by Dickeya sp. (syn. Erwinia chrysanthemi) in Poland. Plant Pathology, 58, 794.
28. Toth, I. K., van der Wolf, J. M., Saddler, G., Lojkowska, E., Hélias, V., Pirhonen, et al. (2011). Dickeya species: an emerging problem for potato production in Europe. Plant Pathology, 60, 385–399.
29. Tsror, L., Erlich, O., Lebiush, S., et al. (2009). Assessment of recent outbreaks of Dickeya sp. (syn. Erwinia chrysanthemi) slow wilt in potato crops in Israel. European Journal of Plant Pathology, 123, 311–320.
30. van der Wolf, J. M., Nijhuis, E. H., Kowalewska, M. J., Saddler, G. S., Parkinson, N., Elphinstone, J. G., et al. (2014). Dickeya solani sp. nov., a pectinolytic plant pathogenic bacterium isolated from potato (Solanum tuberosum). International Journal of Systematic and Evolutionary Microbiology, 64, 768–774.
31. Van Vaerenbergh, J., Baeyen, S., De Vos, P. & Maes, M. (2012) Sequence diversity in the Dickeya fliC gene: phylogeny of the Dickeya Genus and TaqMan (R) PCR for ‘D. solani’, new Biovar 3 variant on potato in Europe, PLoS, One 7.
32. Zhao, S., Poulin, L., Rodriguez, R. L. M., Serna, N. F., Liu, S. Y., Wonni, I., et al. (2012). Development of a variable number of tandem repeats typing scheme for the bacterial rice pathogen Xanthomonas oryzae pv. Oryzicola. Phytopathology, 102, 948–956.