메뉴 건너뛰기




Volumn 102, Issue 10, 2012, Pages 948-956

Development of a variable number of tandem repeats typing scheme for the bacterial rice pathogen Xanthomonas oryzae pv. oryzicola

Author keywords

MLVA

Indexed keywords

PRIMER DNA;

EID: 84867887646     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO-04-12-0078-R     Document Type: Article
Times cited : (32)

References (39)
  • 1
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: A program to analyze DNA sequences
    • Benson, G. 1999. Tandem repeats finder: A program to analyze DNA sequences. Nucleic Acids Res. 27:573-580.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 573-580
    • Benson, G.1
  • 3
    • 34247378909 scopus 로고
    • Rice disease evaluation in Madagascar
    • Buddenhagen, I. W. 1985. Rice disease evaluation in Madagascar. Int. Rice Comm. Newsl. 34:74-78.
    • (1985) Int. Rice Comm. Newsl. , vol.34 , pp. 74-78
    • Buddenhagen, I.W.1
  • 5
    • 77953178850 scopus 로고    scopus 로고
    • Guangdong and Florida populations of 'Candidatus Liberibacter asiaticus' distinguished by a genomic locus with short tandem repeats
    • Chen, J., Deng, X., Sun, X., Jones, D., Irey, M., and Civerolo, E. 2010. Guangdong and Florida populations of 'Candidatus Liberibacter asiaticus' distinguished by a genomic locus with short tandem repeats. Phytopathology 100:567-572.
    • (2010) Phytopathology , vol.100 , pp. 567-572
    • Chen, J.1    Deng, X.2    Sun, X.3    Jones, D.4    Irey, M.5    Civerolo, E.6
  • 7
    • 0036330445 scopus 로고    scopus 로고
    • Evaluation of the genetic structure of Xylella fastidiosa populations from different Citrus sinensis varieties
    • Coletta-Filho, H. D., and Machado, M. A. 2002. Evaluation of the genetic structure of Xylella fastidiosa populations from different Citrus sinensis varieties. Appl. Environ. Microbiol. 68:3731-3736.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3731-3736
    • Coletta-Filho, H.D.1    Machado, M.A.2
  • 8
    • 0037215820 scopus 로고    scopus 로고
    • Geographical genetic structure of Xylella fastidiosa from Citrus in São Paulo State, Brazil
    • Coletta-Filho, H. D., and Machado, M. A. 2003. Geographical genetic structure of Xylella fastidiosa from Citrus in São Paulo State, Brazil. Phytopathology 93:28-34.
    • (2003) Phytopathology , vol.93 , pp. 28-34
    • Coletta-Filho, H.D.1    Machado, M.A.2
  • 10
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar, R. C. 2004. MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 11
    • 84861123507 scopus 로고    scopus 로고
    • Housekeeping gene sequencing and multilocus variable-number tandem-repeat analysis to identify subpopulations within Pseudomonas syringae pv. maculicola and Pseudomonas syringae pv. tomato that correlate with host specificity
    • Gironde, S., and Manceau, C. 2012. Housekeeping gene sequencing and multilocus variable-number tandem-repeat analysis to identify subpopulations within Pseudomonas syringae pv. maculicola and Pseudomonas syringae pv. tomato that correlate with host specificity. Appl. Environ. Microbiol. 78:3266-3279.
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 3266-3279
    • Gironde, S.1    Manceau, C.2
  • 13
    • 84855749573 scopus 로고    scopus 로고
    • Multilocus sequence analysis and type III effector repertoire mining provide new insights into the evolutionary history and virulence of Xanthomonas oryzae
    • Hajri, A., Brin, C., Zhao, S., David, P., Feng, J. X., Koebnik, R., Szurek, B., Verdier, V., Boureau, T., and Poussier, S. 2012. Multilocus sequence analysis and type III effector repertoire mining provide new insights into the evolutionary history and virulence of Xanthomonas oryzae. Mol. Plant Pathol. 13:288-302.
    • (2012) Mol. Plant Pathol. , vol.13 , pp. 288-302
    • Hajri, A.1    Brin, C.2    Zhao, S.3    David, P.4    Feng, J.X.5    Koebnik, R.6    Szurek, B.7    Verdier, V.8    Boureau, T.9    Poussier, S.10
  • 14
    • 0023738045 scopus 로고
    • Numerical index of the discriminatory ability of typing systems: An application of Simpson's index of diversity
    • Hunter, P. R., and Gaston, M. A. 1988. Numerical index of the discriminatory ability of typing systems: An application of Simpson's index of diversity. J. Clin. Microbiol. 26:2465-2466.
    • (1988) J. Clin. Microbiol. , vol.26 , pp. 2465-2466
    • Hunter, P.R.1    Gaston, M.A.2
  • 15
    • 0031685146 scopus 로고    scopus 로고
    • Diversity among xanthomonads pathogenic on 'pepper and tomato
    • Jones, J. B., Stall, R. E., and Bouzar, H. 1998. Diversity among xanthomonads pathogenic on 'pepper and tomato. Annu. Rev. Phytopathol. 36:41-58.
    • (1998) Annu. Rev. Phytopathol. , vol.36 , pp. 41-58
    • Jones, J.B.1    Stall, R.E.2    Bouzar, H.3
  • 16
    • 79953219095 scopus 로고    scopus 로고
    • Differentiation of 'Candidatus Liberibacter asiaticus' isolates by variable-number tandem-repeat analysis
    • Katoh, H., Subandiyah, S., Tomimura, K., Okuda, M., Su, H. J., and Iwanami, T. 2011. Differentiation of 'Candidatus Liberibacter asiaticus' isolates by variable-number tandem-repeat analysis. Appl. Environ. Microbiol. 77:1910-1917.
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 1910-1917
    • Katoh, H.1    Subandiyah, S.2    Tomimura, K.3    Okuda, M.4    Su, H.J.5    Iwanami, T.6
  • 18
    • 68149131058 scopus 로고    scopus 로고
    • Bacterial strain typing in the genomic era
    • Li, W., Raoult, D., and Fournier, P. E. 2009. Bacterial strain typing in the genomic era. FEMS Microbiol. Rev. 33:892-916.
    • (2009) FEMS Microbiol. Rev. , vol.33 , pp. 892-916
    • Li, W.1    Raoult, D.2    Fournier, P.E.3
  • 19
    • 22244459534 scopus 로고    scopus 로고
    • Multiple-locus variable number tandem repeats analysis for genetic fingerprinting of pathogenic bacteria
    • Lindstedt, B. A. 2005. Multiple-locus variable number tandem repeats analysis for genetic fingerprinting of pathogenic bacteria. Electrophoresis 26:2567-2582.
    • (2005) Electrophoresis , vol.26 , pp. 2567-2582
    • Lindstedt, B.A.1
  • 20
    • 33748359313 scopus 로고    scopus 로고
    • Xanthomonas oryzae pathovars: Model pathogens of a model crop
    • Niño-Liu, D. O., Ronald, P. C., and Bogdanove, A. J. 2006. Xanthomonas oryzae pathovars: Model pathogens of a model crop. Mol. Plant Pathol. 7:303-324.
    • (2006) Mol. Plant Pathol. , vol.7 , pp. 303-324
    • Niño-Liu, D.O.1    Ronald, P.C.2    Bogdanove, A.J.3
  • 21
    • 84867844026 scopus 로고    scopus 로고
    • Genotypic and pathotypic diversity of the Xanthomonas oryzae pv. oryzicola in southern China. (Abstr.)
    • Pan, R. W., Zou, W. C., Xu, D. G., Pan, R. Q., and Ji, C. Y. 2010. Genotypic and pathotypic diversity of the Xanthomonas oryzae pv. oryzicola in southern China. (Abstr.) Phytopathology 100:S96.
    • (2010) Phytopathology , vol.100
    • Pan, R.W.1    Zou, W.C.2    Xu, D.G.3    Pan, R.Q.4    Ji, C.Y.5
  • 22
    • 10044265887 scopus 로고    scopus 로고
    • Data analysis methods
    • P. Hamon, M. Seguin, X. Perrier, and J. C. Glaszmann, eds. Enfield, Science Publishers, Montpellier, France
    • Perrier, X., Flori, A., and Bonnot, F. 2003. Data analysis methods. Pages 43-76 in: Genetic Diversity of Cultivated Tropical Plants. P. Hamon, M. Seguin, X. Perrier, and J. C. Glaszmann, eds. Enfield, Science Publishers, Montpellier, France.
    • (2003) Genetic Diversity of Cultivated Tropical Plants , pp. 43-76
    • Perrier, X.1    Flori, A.2    Bonnot, F.3
  • 23
    • 79951471001 scopus 로고    scopus 로고
    • Identification of variable-number tandem-repeat (VNTR) sequences in Acinetobacter baumannii and interlaboratory validation of an optimized multiple-locus VNTR analysis typing scheme
    • Pourcel, C., Minandri, F., Hauck, Y., D'Arezzo, S., Imperi, F., Vergnaud, G., and Visca, P. 2011. Identification of variable-number tandem-repeat (VNTR) sequences in Acinetobacter baumannii and interlaboratory validation of an optimized multiple-locus VNTR analysis typing scheme. J. Clin. Microbiol. 49:539-548.
    • (2011) J. Clin. Microbiol. , vol.49 , pp. 539-548
    • Pourcel, C.1    Minandri, F.2    Hauck, Y.3    D'Arezzo, S.4    Imperi, F.5    Vergnaud, G.6    Visca, P.7
  • 24
    • 79959932905 scopus 로고    scopus 로고
    • Insertion sequence-and tandem repeatbased genotyping techniques for Xanthomonas citri pv. mangiferae indicae
    • Pruvost, O., Vernière, C., Vital, K., Guérin, F., Jouen, E., Chiroleu, F., Ah-You, N., and Gagnevin, L. 2011. Insertion sequence-and tandem repeatbased genotyping techniques for Xanthomonas citri pv. mangiferae indicae. Phytopathology 101:887-893.
    • (2011) Phytopathology , vol.101 , pp. 887-893
    • Pruvost, O.1    Vernière, C.2    Vital, K.3    Guérin, F.4    Jouen, E.5    Chiroleu, F.6    Ah-You, N.7    Gagnevin, L.8
  • 25
    • 58349107901 scopus 로고    scopus 로고
    • MFEprimer: Multiple factor evaluation of the specificity of PCR primers
    • Qu, W., Shen, Z., Zhao, D., Yang, Y., and Zhang, C. 2009. MFEprimer: Multiple factor evaluation of the specificity of PCR primers. Bioinformatics 25:276-278.
    • (2009) Bioinformatics , vol.25 , pp. 276-278
    • Qu, W.1    Shen, Z.2    Zhao, D.3    Yang, Y.4    Zhang, C.5
  • 28
    • 0035063367 scopus 로고    scopus 로고
    • Genetic diversity of Mycobacterium tuberculosis in Sicily based on spoligotyping and variable number of tandem DNA repeats and comparison with a spoligotyping database for population-based analysis
    • Sola, C., Ferdinand, S., Mammina, C., Nastasi, A., and Rastogi, N. 2001. Genetic diversity of Mycobacterium tuberculosis in Sicily based on spoligotyping and variable number of tandem DNA repeats and comparison with a spoligotyping database for population-based analysis. J. Clin. Microbiol. 39:1559-1565.
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 1559-1565
    • Sola, C.1    Ferdinand, S.2    Mammina, C.3    Nastasi, A.4    Rastogi, N.5
  • 29
    • 0001394117 scopus 로고
    • Research relating to the recent outbreak of citrus canker in Florida
    • Stall, R. E., and Civerolo E. L. 1991. Research relating to the recent outbreak of citrus canker in Florida. Annu. Rev. Phytopathol. 29:399-420.
    • (1991) Annu. Rev. Phytopathol. , vol.29 , pp. 399-420
    • Stall, R.E.1    Civerolo, E.L.2
  • 30
    • 0033942347 scopus 로고    scopus 로고
    • Mapping of QTLs conferring resistance to bacterial leaf streak in rice
    • Tang, D., Wu, W., Li, W., Lu, H., and Worland, A. J. 2000. Mapping of QTLs conferring resistance to bacterial leaf streak in rice. Theor. Appl. Genet. 101:286-291.
    • (2000) Theor. Appl. Genet. , vol.101 , pp. 286-291
    • Tang, D.1    Wu, W.2    Li, W.3    Lu, H.4    Worland, A.J.5
  • 31
    • 79960096632 scopus 로고    scopus 로고
    • Genomic analysis of Xanthomonas oryzae isolates from rice grown in the United States reveals substantial divergence from known X. oryzae pathovars
    • Triplett, L. R., Hamilton, J. P., Buell, C. R., Tisserat, N. A., Verdier, V., Zink, F., and Leach, J. E. 2011. Genomic analysis of Xanthomonas oryzae isolates from rice grown in the United States reveals substantial divergence from known X. oryzae pathovars. Appl. Environ. Microbiol. 77:3930-3937.
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 3930-3937
    • Triplett, L.R.1    Hamilton, J.P.2    Buell, C.R.3    Tisserat, N.A.4    Verdier, V.5    Zink, F.6    Leach, J.E.7
  • 32
    • 33846483622 scopus 로고    scopus 로고
    • Tracing isolates of bacterial species by multi locus variable number of tandem repeat analysis (MLVA)
    • van Belkum, A. 2007. Tracing isolates of bacterial species by multi locus variable number of tandem repeat analysis (MLVA). FEMS Immunol. Med. Microbiol. 49:22-27.
    • (2007) FEMS Immunol. Med. Microbiol. , vol.49 , pp. 22-27
    • Van Belkum, A.1
  • 34
    • 67849101749 scopus 로고    scopus 로고
    • Multiple locus variable number of tandem repeats analysis
    • Vergnaud, G., and Pourcel, C. 2009. Multiple locus variable number of tandem repeats analysis. Methods Mol. Biol. 551:141-158.
    • (2009) Methods Mol. Biol. , vol.551 , pp. 141-158
    • Vergnaud, G.1    Pourcel, C.2
  • 36
    • 79751503366 scopus 로고    scopus 로고
    • First report of bacterial leaf streak caused by Xanthomonas oryzae pv. oryzicola on rice in Burkina Faso
    • Wonni, I., Ouedraogo, L., and Verdier, V. 2010. First report of bacterial leaf streak caused by Xanthomonas oryzae pv. oryzicola on rice in Burkina Faso. Plant Dis. 95:72.
    • (2010) Plant Dis. , vol.95 , pp. 72
    • Wonni, I.1    Ouedraogo, L.2    Verdier, V.3
  • 37
    • 3142722782 scopus 로고    scopus 로고
    • The Rxo1/Rba1 locus of maize controls resistance reactions to pathogenic and non-host bacteria
    • Zhao, B., Ardales, E., Brasset, E., Claflin, L. E., Leach, J. E., and Hulbert S. H. 2004. The Rxo1/Rba1 locus of maize controls resistance reactions to pathogenic and non-host bacteria. Theor. Appl. Genet. 109:71-79.
    • (2004) Theor. Appl. Genet. , vol.109 , pp. 71-79
    • Zhao, B.1    Ardales, E.2    Brasset, E.3    Claflin, L.E.4    Leach, J.E.5    Hulbert, S.H.6
  • 38
    • 2942653484 scopus 로고    scopus 로고
    • The avrRxo1 gene from the rice pathogen Xanthomonas oryzae pv. oryzicola confers a nonhost defense reaction on maize with resistance gene Rxo1
    • Zhao, B., Ardales, E. Y., Raymundo, A., Bai, J., Trick, H. N., Leach, J. E., and Hulbert, S. H. 2004. The avrRxo1 gene from the rice pathogen Xanthomonas oryzae pv. oryzicola confers a nonhost defense reaction on maize with resistance gene Rxo1. Mol. Plant-Microbe Interact. 17:771-779.
    • (2004) Mol. Plant-Microbe Interact. , vol.17 , pp. 771-779
    • Zhao, B.1    Ardales, E.Y.2    Raymundo, A.3    Bai, J.4    Trick, H.N.5    Leach, J.E.6    Hulbert, S.H.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.