Validation of 'variable number of tandem repeat'-based approach for examination of 'Candidatus Liberibacter asiaticus' diversity and its applications for the analysis of the pathogen populations in the areas of recent introduction

PLoS ONE

Volumn 8, Issue 11, 2013, Pages

  Matos, Luis A ^a,b   Hilf, Mark E ^c   Chen, Jianchi ^d   Folimonova, Svetlana Y ^a  

^a UNIVERSITY OF FLORIDA   (United States)

^b UASD   (Dominican Republic)

^c US Department of Agriculture Agricultural Research and Services   (United States)

^d U S DEPARTMENT OF AGRICULTURE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALPHAPROTEOBACTERIA; ARTICLE; CENTRAL AMERICA; CITRUS; CONTROLLED STUDY; GENE LOCUS; GEOGRAPHY; HAPLOTYPE; LIBERIBACTER ASIATICUS; MEXICO; MICROBIAL DIVERSITY; NONHUMAN; PLANT PATHOGEN INTERACTION; POPULATION DISPERSION; PSYLLID; SPECIES INTRODUCTION; TANDEM REPEAT; UNITED STATES; VALIDATION PROCESS; VARIABLE NUMBER OF TANDEM REPEAT;

ANIMALS; CARIBBEAN REGION; CENTRAL AMERICA; CITRUS; DNA, BACTERIAL; FLORIDA; GENETIC VARIATION; GEOGRAPHY; HAPLOTYPES; HEMIPTERA; HOST-PATHOGEN INTERACTIONS; MEXICO; MINISATELLITE REPEATS; PLANT DISEASES; POLYMERASE CHAIN REACTION; POLYMORPHISM, GENETIC; POPULATION DYNAMICS; RHIZOBIACEAE;

EID: 84892411371     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0078994     Document Type: Article

References (46)

1. da Graça JV (1991) Citrus greening disease. Annu. Rev. Phytopathol. 29: 109-135.
2. Bove JM (2006) Huanglongbing: a destructive, newly-emerging, century-old disease of citrus. J. Plant Pathol. 88: 7-37.
3. Raychaudhuri SP, Nariani TK, Lele VC (1969) Citrus die-back problem in India. Proceedings of the First International Citrus Symposium 3:1433-1437.
4. Gottwald TR, da Graça JV, Bassanezi RB (2007) Citrus huanglongbing: the pathogen and its impact. Plant Health Progr. Plant Management Network website. Available: http://www.plantmanagementnetwork.org/pub/php/ review/2007/huanglongbing/. Accessed 2013 Oct 8.
5. Gottwald TR (2010) Current epidemiological understanding of citrus Huanglongbing. Annu. Rev. Phytopathol. 48: 119-139.
6. Matsumoto TM, Wang MC, Su HJ (1961) Studies on likubin. In:Price WC (ed) Proceedings of the second conference of the International Organization of Citrus Virologists. Gainesville, University of Florida, pp 121-125.
7. Tirtawidjaja S, Hadiwidjaja T, Lasheen AM (1965) Citrus veinphloem degeneration virus, a possible cause of citrus chlorosis in Java. Proc Am Soc Hortic Sci 86: 235-243
8. Miyakawa T, Tsuno K (1989) Occurrence of citrus greening disease in the southern islands of Japan. Ann. Phytopathol. Soc. Jpn. 55: 667-670
9. McClean APD, Oberholzer PCJ (1965) Greening disease of sweet orange: Evidence that it is caused by a transmissible virus. S. Afr. J. Agric. Sci. 8: 253-276
10. Oberholzer PCJ, von Standen DFA, BassonWJ (1965) Greening disease of sweet orange in South Africa. Pages 213-219 in: Proc. of the 3rd Conf. Intl. Organ. Citrus Virol. Price WC, ed. Gainesville, FL, Univ. Florida Press.
11. Coletta-Filho HD, Targon MLPN, Takita MA, De Negri JD, Pompeu JJ, Machado MA (2004) First Report of the Causal Agent of Huanglongbing ("Candidatus Liberibacter asiaticus") in Brazil. Plant Disease 88: 1382.
12. nd International Citrus Canker and Huanglongbing Research Workshop 2005, Orlando Florida, USA, p50.
13. Martínez Y, Llauger R, Batista L, Iglesia A, Collazo C, et al. (2008) First report of 'Candidatus Liberibacter asiaticus' associated with Huanglongbing in Cuba. BS Plant Pathology 18: 7.
14. Matos L, Hilf ME, Camejo J (2009) First report of 'Candidatus Liberibacter asiaticus' associated with Citrus Huanglongbing in the Dominican Republic. Plant Disease 93: 668
15. Manjunath KL, Ramadugu C, Majil VM, Williams S, Irey M, Lee RF (2010) First Report of the Citrus Huanglongbing Associated Bacterium 'Candidatus Liberibacter asiaticus' from Sweet Orange, Mexican Lime, and Asian Citrus Psyllid in Belize. Plant Disease 94(6): 781.
16. Estévez de Jensen C, Vitoreli A, and Román F (2010) Citrus greening in commercial orchards in Puerto Rico. Phytopathology 100: S34.
17. OIRSA (Organismo Internacional Regional de Sanidad Agropecuaria) (2011) Taller Sensibilización sobre Certificación en la Producción Material Vegetativo. Santo Domingo, República Dominicana. Septiembre 2011.
18. Trujillo-Arriaga J (2010) Situación actual, regulación y manejo del HLB en México. 2do. Taller internacional sobre el huanglongbing y el psilido asiático de los cítricos. Mérida, Yucatán, México.
19. Brown SE, Oberheim AP, Barrett A, McLaughlin WA (2011) First Report of 'Candidatus Liberibacter asiaticus' associated with huanglongbing in the weeds Cleome rutidosperma, Pisonia aculeata and Trichostigma octandrum in Jamaica. BS Plant Pathology - New Disease Report 24-25.
20. Jagoueix S, Bove JM, Garnier M (1994) The phloem-limited bacterium of greening disease of citrus is a member of the alpha subdivision of the Proteobacteria. Int. J. Syst. Bacteriol. 44: 379-386
21. Manjunath KL, Halbert SE, Ramadugu C, Webb S, Lee RF (2008) Detection of Candidatus Liberobacter asiaticus in Diaphorina citri and Its Importance in the Management of citrus Huanglongbing in Florida. Phytopathology 98: 387-396.
22. Tatineni S, Sagaram US, Gowda S, Robertson CJ, Dawson WO, et al. (2008) In planta distribution of 'Candidatus Liberibacter asiaticus' as revealed by polymerase chain reaction (PCR) and real-time PCR. Phytopathology 98: 592-599.
23. Folimonova SY, Achor DS (2010) Early events of citrus greening (Huanglongbing) disease development at the ultrastructural level. Phytopathology 100: 949-958.
24. Johnson E, Bright DB, Graham JH (2012) Early root infection and damage in citrus huanglongbing disease development. Phytopathology 102: S4.59.
25. Hilf ME (2011) Colonization of citrus seed coats by 'Candidatus Liberibacter asiaticus': Implications for seed transmission of the bacterium. Phytopathology 101: 1242-1250.
26. Hilf ME, Sims KR, Folimonova SY, Achor DS (2013) Visualization of 'Candidatus Liberibacter asiaticus' cells in the vascular bundle of citrus seed coats with fluorescence in situ hybridization and transmission electron microscopy. Phytopathology 103: 545-554
27. da Graça JV, Korsten L (2004) Citrus huanglongbing: review, present status and future strategies. Diseases of Fruits and Vegetables, Vol. 1, ed. Naqvi SAMH, pp. 229-45. Dordrecht: Kluwer Academic Press.
28. Folimonova SY, Robertson CJ, Garnsey SM, Gowda S, Dawson WO (2009) Examination of the responses of different haplotypes of citrus to huanglongbing (citrus greening) under different conditions. Phytopathology 99: 1346-1354.
29. Ramadugu C, Manjunah KL, Halbert SE, Brlansky RH, Roose M, et al. (2010) Characterization of huanglongbing associated 'Candidatus Liberibacter asiaticum'from citrus relatives. Phytopathology 100 (6 Suppl.): S107.
30. Tomimura K, Miyata S., Furuya N, Kubota K, Okuda M, et al. (2009) Evaluation of genetic diversity among 'Candidatus Liberibacter asiaticus' isolates collected in Southeast Asia. Phytopathology 99(9): 1062-1069.
31. Teixeira DC, Eveillard S, Sirand-Pugnet P, Wulff NA, Saillard C, et al. (2008) The tufB-secE-nusG-rplKAJL-rpoB gene cluster of the liberibacters: sequence comparisons, phylogeny and speciation. Int J. Syst Evol Microbiol. 58: 1414-21
32. Bastianel C, Garnier-Semancik M, Renaudin J, Bové JM, Eveillard S (2005) Diversity of "Candidatus Liberibacter asiaticus," based on the omp gene sequence. Appl. Environ. Microbiol. 71: 6473-6478.
33. Miyata SI, Kato H, Davis R, Smith MW, Weinert M, et al. (2011) Asian-common strains of 'Candidatus Liberibacter asiaticus' are distributed in Northeast India, Papua New Guinea and Timor-Leste. J. Gen. Plant Pathol. 77: 43-47.
34. Duan Y, Zhou L, Hall DG, Li W, Doddapaneni H, et al. (2009) Complete genome sequence of citrus Huanglongbing bacterium, 'Candidatus Liberibacter asiaticus' obtained through metagenomics. Mol. Plant-Microbe Interact. 22: 1011-1020.
35. Zhou L, Powell CA, Hoffman MT, Li W, Fan G, et al. (2011) Diversity and Plasticity of the Intracellular Plant Pathogen and Insect Symbiont "Candidatus Liberibacter asiaticus" as Revealed by Hypervariable Prophage Genes with Intragenic Tandem Repeats. Environ. Microbiol. 77(18): 6663.
36. Katoh H, Subandiyah S, Tomimura K, Okuda M, Su HJ, Iwanami T (2011) Differentiation of "Candidatus Liberibacter asiaticus" isolates by variable number tandem-repeat analysis. Appl Environ Microbiol 77(5): 1910-1917.
37. Katoh H, Davis R, Smith MW, Weinert M, and Iwanami T (2012) Differentiation of Indian, East Timorese, Papuan and Floridian 'Candidatus Liberibacter asiaticus' isolates on the basis of simple sequence repeat and single nucleotide polymorphism profiles at 25 loci. Ann. Appl. Biol. 160: 291-297.
38. Islam Md-S, Glynn JM, Bai Y, Duan YP, Coletta-Filho H D, et al. (2012) Multilocus microsatellite analysis of 'Candidatus Liberibacter asiaticus' associated with citrus Huanglongbing worldwide. BMC Microbiology, 12: 39
39. Chen J, Deng X, Sun X, Jones D, Irey M, Civerolo E (2010) Guangdong and Florida populations of 'Candidatus Liberibacter asiaticus' distinguished by a genomic locus with short tandem repeats. Phytopathology 100 (6): 567-572.
40. van Belkum A (1998) Shortsequence DNA repeats in prokaryotic genomes. Microbiol. Mol. Biol. Rev. 62: 275-293.
41. Ellegren H (2004) Microsatellites: simple sequences with complex evolution. Nature Review, 5: 435-445.
42. Guichoux E (2011) Current trends in microsatellite genotyping. Molecular Ecology Resources 11: 591-611.
43. Coil DA, Vandersmissen L, Ginevra C, Jarraud S, Lammertyn E, Anné J (2008) Intragenic tandem repeat variation between Legionella pneumophila Strains. BMC Microbiology 8: 218.
44. th IOCV, 219-229.
45. Irey MS, Gast T, Gottwald T (2006) Comparison of visual assessment and PCR assay testing to estimate the incidence of the huanglongbing pathogen in commercial Florida citrus. Proc. Fla. State Hortic. Soc. 42: 17-21.
46. Li W, Hartung JS, Levy L (2006) Quantitative real-time PCR for detection and identification of Candidatus Liberibacter species associated with citrus huanglongbing. J Microbiol Methods 66: 104-15.