-
1
-
-
33646888810
-
A multiplex real-time PCR assay for detection of Xanthomonas campestris from brassicas
-
Berg T, Tesoriero L, Hailstones DL, 2006. A multiplex real-time PCR assay for detection of Xanthomonas campestris from brassicas. Letters in Applied Microbiology42, 624-30.
-
(2006)
Letters in Applied Microbiology
, vol.42
, pp. 624-630
-
-
Berg, T.1
Tesoriero, L.2
Hailstones, D.L.3
-
2
-
-
84864147590
-
Proposal to reclassify Brenneria quercina (Hildebrand & Schroth 1967) Hauben 1999 into a novel genus, Lonsdalea gen. nov., as Lonsdalea quercina comb. nov.
-
descriptions of Lonsdalea quercina subsp. quercina comb. nov., Lonsdalea quercina subsp. iberica subsp. nov. and Lonsdalea quercina subsp. britannica subsp. nov., emendation of the description of the genus Brenneria, reclassification of Dickeya dieffenbachiae as Dickeya dadantii subsp. dieffenbachiae comb. nov., and emendation of the description of Dickeya dadantii
-
Brady C, Cleenwerck I, Denman S et al., 2012. Proposal to reclassify Brenneria quercina (Hildebrand & Schroth 1967) Hauben et al. 1999 into a novel genus, Lonsdalea gen. nov., as Lonsdalea quercina comb. nov., descriptions of Lonsdalea quercina subsp. quercina comb. nov., Lonsdalea quercina subsp. iberica subsp. nov. and Lonsdalea quercina subsp. britannica subsp. nov., emendation of the description of the genus Brenneria, reclassification of Dickeya dieffenbachiae as Dickeya dadantii subsp. dieffenbachiae comb. nov., and emendation of the description of Dickeya dadantii. International Journal of Systematic and Evolutionary Microbiology62, 1592-602.
-
(2012)
International Journal of Systematic and Evolutionary Microbiology
, vol.62
, pp. 1592-1602
-
-
Brady, C.1
Cleenwerck, I.2
Denman, S.3
-
4
-
-
27544458928
-
Quantitative real-time polymerase chain reaction for bacterial enumeration and allelic discrimination to differentiate Xanthomonas strains on citrus
-
Cubero J, Graham JH, 2005. Quantitative real-time polymerase chain reaction for bacterial enumeration and allelic discrimination to differentiate Xanthomonas strains on citrus. Phytopathology95, 1333-40.
-
(2005)
Phytopathology
, vol.95
, pp. 1333-1340
-
-
Cubero, J.1
Graham, J.H.2
-
5
-
-
0028795873
-
PCR detection of Erwinia carotovora subsp. atroseptica associated with potato tissue
-
De Boer S, Ward L, 1995. PCR detection of Erwinia carotovora subsp. atroseptica associated with potato tissue. Phytopathology85, 854-8.
-
(1995)
Phytopathology
, vol.85
, pp. 854-858
-
-
De Boer, S.1
Ward, L.2
-
6
-
-
0000122573
-
phylip - Phylogeny Inference Package (version 3.2)
-
Felsenstein J, 1989. phylip - Phylogeny Inference Package (version 3.2). Cladistics5, 164-6.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
7
-
-
33947541283
-
Early detection of Leifsonia xyli subsp. xyli in sugarcane leaves by real-time polymerase chain reaction
-
Grisham MP, Pan Y, Richard EPJ, 2007. Early detection of Leifsonia xyli subsp. xyli in sugarcane leaves by real-time polymerase chain reaction. Plant Disease91, 430-4.
-
(2007)
Plant Disease
, vol.91
, pp. 430-434
-
-
Grisham, M.P.1
Pan, Y.2
Richard, E.P.J.3
-
8
-
-
77952299957
-
prodigal: prokaryotic gene recognition and translation initiation site identification
-
Hyatt D, Chen G-L, Locascio PF, Land ML, Larimer FW, Hauser LJ, 2010. prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics11, 119.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 119
-
-
Hyatt, D.1
Chen, G.-L.2
Locascio, P.F.3
Land, M.L.4
Larimer, F.W.5
Hauser, L.J.6
-
9
-
-
33746253641
-
Identification of Salmonella enterica serovar Typhimurium using specific PCR primers obtained by comparative genomics in Salmonella serovars
-
Kim HJ, Park SH, Lee TH et al., 2006. Identification of Salmonella enterica serovar Typhimurium using specific PCR primers obtained by comparative genomics in Salmonella serovars. Journal of Food Protection69, 1653-61.
-
(2006)
Journal of Food Protection
, vol.69
, pp. 1653-1661
-
-
Kim, H.J.1
Park, S.H.2
Lee, T.H.3
-
10
-
-
48149109780
-
Microarray detection of food-borne pathogens using specific probes prepared by comparative genomics
-
Kim H-J, Park S-H, Lee T-H, Nahm B-H, Kim Y-R, Kim H-Y, 2008. Microarray detection of food-borne pathogens using specific probes prepared by comparative genomics. Biosensors and Bioelectronics24, 238-46.
-
(2008)
Biosensors and Bioelectronics
, vol.24
, pp. 238-246
-
-
Kim, H.-J.1
Park, S.-H.2
Lee, T.-H.3
Nahm, B.-H.4
Kim, Y.-R.5
Kim, H.-Y.6
-
11
-
-
77949772939
-
Symptoms and yield reduction caused by Dickeya spp. strains isolated from potato and river water in Finland
-
Laurila J, Hannukkala A, Nykyri J et al., 2010. Symptoms and yield reduction caused by Dickeya spp. strains isolated from potato and river water in Finland. European Journal of Plant Pathology126, 249-62.
-
(2010)
European Journal of Plant Pathology
, vol.126
, pp. 249-262
-
-
Laurila, J.1
Hannukkala, A.2
Nykyri, J.3
-
12
-
-
78649778942
-
Diagnosis and detection of the main bacterial pathogens of stone fruit and almond
-
López M, Roselló M, Palacio-Bielsa A, 2010. Diagnosis and detection of the main bacterial pathogens of stone fruit and almond. Journal of Plant Pathology92, S1.57-66.
-
(2010)
Journal of Plant Pathology
, vol.92
-
-
López, M.1
Roselló, M.2
Palacio-Bielsa, A.3
-
13
-
-
1942440360
-
Improved sampling methods for real-time polymerase chain reaction diagnosis of citrus canker from field samples
-
Mavrodieva V, Levy L, Gabriel DW, 2004. Improved sampling methods for real-time polymerase chain reaction diagnosis of citrus canker from field samples. Phytopathology94, 61-8.
-
(2004)
Phytopathology
, vol.94
, pp. 61-68
-
-
Mavrodieva, V.1
Levy, L.2
Gabriel, D.W.3
-
14
-
-
58049218990
-
TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops
-
Milne I, Lindner D, Bayer M et al., 2009. TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics25, 126-7.
-
(2009)
Bioinformatics
, vol.25
, pp. 126-127
-
-
Milne, I.1
Lindner, D.2
Bayer, M.3
-
15
-
-
33747592809
-
Advances in molecular phytodiagnostics - new solutions for old problems
-
Mumford R, Boonham N, Tomlinson J, Barker I, 2006. Advances in molecular phytodiagnostics - new solutions for old problems. European Journal of Plant Pathology116, 1-19.
-
(2006)
European Journal of Plant Pathology
, vol.116
, pp. 1-19
-
-
Mumford, R.1
Boonham, N.2
Tomlinson, J.3
Barker, I.4
-
16
-
-
0029900984
-
Characterization of Erwinia chrysanthemi by pectinolytic isozyme polymorphism and restriction fragment length polymorphism analysis of PCR-amplified fragments of pel genes
-
Nassar A, Darrasse A, Lemattre M et al., 1996. Characterization of Erwinia chrysanthemi by pectinolytic isozyme polymorphism and restriction fragment length polymorphism analysis of PCR-amplified fragments of pel genes. Applied and Environmental Microbiology62, 2228-35.
-
(1996)
Applied and Environmental Microbiology
, vol.62
, pp. 2228-2235
-
-
Nassar, A.1
Darrasse, A.2
Lemattre, M.3
-
17
-
-
77958016500
-
First report of soft rot of potatoes caused by Dickeya dadantii in Zimbabwe
-
Ngadze E, Coutinho TA, van der Waals JE, 2010. First report of soft rot of potatoes caused by Dickeya dadantii in Zimbabwe. Plant Disease94, 1263.
-
(2010)
Plant Disease
, vol.94
, pp. 1263
-
-
Ngadze, E.1
Coutinho, T.A.2
van der Waals, J.E.3
-
18
-
-
0034623005
-
t-coffee: a novel method for fast and accurate multiple sequence alignment
-
Notredame C, Higgins DG, Heringa J, 2000. t-coffee: a novel method for fast and accurate multiple sequence alignment. Journal of Molecular Biology302, 205-17.
-
(2000)
Journal of Molecular Biology
, vol.302
, pp. 205-217
-
-
Notredame, C.1
Higgins, D.G.2
Heringa, J.3
-
19
-
-
70350733439
-
Dickeya species relatedness and clade structure determined by comparison of recA sequences
-
Parkinson N, Stead D, Bew J, Heeney J, Tsror Lahkim L, Elphinstone J, 2009. Dickeya species relatedness and clade structure determined by comparison of recA sequences. International Journal of Systematic and Evolutionary Microbiology59, 2388-93.
-
(2009)
International Journal of Systematic and Evolutionary Microbiology
, vol.59
, pp. 2388-2393
-
-
Parkinson, N.1
Stead, D.2
Bew, J.3
Heeney, J.4
Tsror Lahkim, L.5
Elphinstone, J.6
-
20
-
-
70350103672
-
Design and development of a DNA microarray for rapid identification of multiple European quarantine phytopathogenic bacteria
-
Pelludat C, Duffy B, Frey JE, 2009. Design and development of a DNA microarray for rapid identification of multiple European quarantine phytopathogenic bacteria. European Journal of Plant Pathology125, 413-23.
-
(2009)
European Journal of Plant Pathology
, vol.125
, pp. 413-423
-
-
Pelludat, C.1
Duffy, B.2
Frey, J.E.3
-
21
-
-
84859324209
-
Alignment-free design of highly discriminatory diagnostic primer sets for Escherichia coli O104:H4 outbreak strains
-
Pritchard L, Holden NJ, Bielaszewska M, Karch H, Toth IK, 2012. Alignment-free design of highly discriminatory diagnostic primer sets for Escherichia coli O104:H4 outbreak strains. PLoS ONE7, e34498.
-
(2012)
PLoS ONE
, vol.7
-
-
Pritchard, L.1
Holden, N.J.2
Bielaszewska, M.3
Karch, H.4
Toth, I.K.5
-
22
-
-
0034201441
-
emboss: the European molecular biology open software suite
-
Rice P, Longden I, Bleasby A, 2000. emboss: the European molecular biology open software suite. Trends in Genetics16, 276-7.
-
(2000)
Trends in Genetics
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
23
-
-
7044220813
-
Real-time PCR for detection and quantification of Erwinia amylovora, the causal agent of fireblight
-
Salm H, Geider K, 2004. Real-time PCR for detection and quantification of Erwinia amylovora, the causal agent of fireblight. Plant Pathology53, 602-10.
-
(2004)
Plant Pathology
, vol.53
, pp. 602-610
-
-
Salm, H.1
Geider, K.2
-
24
-
-
22544472186
-
Transfer of Pectobacterium chrysanthemi (Burkholder 1953) Brenner 1973 and Brenneria paradisiaca to the genus Dickeya gen. nov. as Dickeya chrysanthemi comb. nov. and Dickeya paradisiaca comb. nov. and delineation of four novel species, Dickeya dadantii sp. nov., Dickeya dianthicola sp. nov., Dickeya dieffenbachiae sp. nov. and Dickeya zeae sp. nov
-
Samson R, Legendre J, Christen R, Fischer-Le Saux M, Achouak W, Gardan L, 2005. Transfer of Pectobacterium chrysanthemi (Burkholder et al. 1953) Brenner et al. 1973 and Brenneria paradisiaca to the genus Dickeya gen. nov. as Dickeya chrysanthemi comb. nov. and Dickeya paradisiaca comb. nov. and delineation of four novel species, Dickeya dadantii sp. nov., Dickeya dianthicola sp. nov., Dickeya dieffenbachiae sp. nov. and Dickeya zeae sp. nov. International Journal of Systematic and Evolutionary Microbiology55, 1415-27.
-
(2005)
International Journal of Systematic and Evolutionary Microbiology
, vol.55
, pp. 1415-1427
-
-
Samson, R.1
Legendre, J.2
Christen, R.3
Fischer-Le Saux, M.4
Achouak, W.5
Gardan, L.6
-
25
-
-
0036084834
-
Real-time polymerase chain reaction for one-hour on-site diagnosis of Pierce's disease of grape in early season asymptomatic vines
-
Schaad NW, Opgenorth D, Gaush P, 2002. Real-time polymerase chain reaction for one-hour on-site diagnosis of Pierce's disease of grape in early season asymptomatic vines. Phytopathology92, 721-8.
-
(2002)
Phytopathology
, vol.92
, pp. 721-728
-
-
Schaad, N.W.1
Opgenorth, D.2
Gaush, P.3
-
26
-
-
33846311412
-
A high throughput membrane BIO-PCR technique for ultra-sensitive detection of Pseudomonas syringae pv. phaseolicola
-
Schaad N, Schaad YB, Knorr D, 2007. A high throughput membrane BIO-PCR technique for ultra-sensitive detection of Pseudomonas syringae pv. phaseolicola. Plant Pathology56, 1-8.
-
(2007)
Plant Pathology
, vol.56
, pp. 1-8
-
-
Schaad, N.1
Schaad, Y.B.2
Knorr, D.3
-
27
-
-
74549221383
-
Annotation error in public databases: misannotation of molecular function in enzyme superfamilies
-
Schnoes AM, Brown SD, Dodevski I, Babbitt PC, 2009. Annotation error in public databases: misannotation of molecular function in enzyme superfamilies. PLoS Computational Biology5, e1000605.
-
(2009)
PLoS Computational Biology
, vol.5
-
-
Schnoes, A.M.1
Brown, S.D.2
Dodevski, I.3
Babbitt, P.C.4
-
28
-
-
70449530716
-
Biochemical and genetical analysis reveal a new clade of biovar 3 Dickeya spp. strains isolated from potato in Europe
-
Sławiak M, van Beckhoven JRCM, Speksnijder AGCL, Czajkowski R, Grabe G, van der Wolf JM, 2009. Biochemical and genetical analysis reveal a new clade of biovar 3 Dickeya spp. strains isolated from potato in Europe. European Journal of Plant Pathology125, 245-61.
-
(2009)
European Journal of Plant Pathology
, vol.125
, pp. 245-261
-
-
Sławiak, M.1
van Beckhoven, J.R.C.M.2
Speksnijder, A.G.C.L.3
Czajkowski, R.4
Grabe, G.5
van der Wolf, J.M.6
-
29
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A, 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics22, 2688-90.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
30
-
-
84876967733
-
The first record of Dickeya zeae in the UK
-
Stead DE, Parkinson N, Bew J, Hennessy J, Wilson JK, Elphinstone JG, 2010. The first record of Dickeya zeae in the UK. Plant Pathology59, 401.
-
(2010)
Plant Pathology
, vol.59
, pp. 401
-
-
Stead, D.E.1
Parkinson, N.2
Bew, J.3
Hennessy, J.4
Wilson, J.K.5
Elphinstone, J.G.6
-
31
-
-
0032769504
-
A one step PCR-based method for the detection of economically important soft rot Erwinia species on micropropagated potato plants
-
Toth I, Hyman L, 1999. A one step PCR-based method for the detection of economically important soft rot Erwinia species on micropropagated potato plants. Journal of Applied Microbiology87, 157-66.
-
(1999)
Journal of Applied Microbiology
, vol.87
, pp. 157-166
-
-
Toth, I.1
Hyman, L.2
-
32
-
-
79955538276
-
Dickeya species: an emerging problem for potato production in Europe
-
Toth IK, van der Wolf JM, Saddler G et al., 2011. Dickeya species: an emerging problem for potato production in Europe. Plant Pathology60, 385-9.
-
(2011)
Plant Pathology
, vol.60
, pp. 385-389
-
-
Toth, I.K.1
van der Wolf, J.M.2
Saddler, G.3
-
33
-
-
34547571477
-
Detection of Xanthomonas fragariae and presumptive detection of Xanthomonas arboricola pv. fragariae, from strawberry leaves, by real-time PCR
-
Weller SA, Beresford-Jones NJ, Hall J, Thwaites R, Parkinson N, Elphinstone JG, 2007. Detection of Xanthomonas fragariae and presumptive detection of Xanthomonas arboricola pv. fragariae, from strawberry leaves, by real-time PCR. Journal of Microbiological Methods70, 379-83.
-
(2007)
Journal of Microbiological Methods
, vol.70
, pp. 379-383
-
-
Weller, S.A.1
Beresford-Jones, N.J.2
Hall, J.3
Thwaites, R.4
Parkinson, N.5
Elphinstone, J.G.6
-
34
-
-
77958571401
-
A PCR method for the detection of Listeria monocytogenes based on a novel target sequence identified by comparative genomic analysis
-
Zhang D, Zhang L, Wang D, Suo B, Shi X, 2010. A PCR method for the detection of Listeria monocytogenes based on a novel target sequence identified by comparative genomic analysis. Journal of Food Safety30, 832-47.
-
(2010)
Journal of Food Safety
, vol.30
, pp. 832-847
-
-
Zhang, D.1
Zhang, L.2
Wang, D.3
Suo, B.4
Shi, X.5
-
35
-
-
61649085874
-
Identification of new target sequences for PCR detection of Vibrio parahaemolyticus by genome comparison
-
Zhu D, Zhou M, Fan Y, Shi X, 2009. Identification of new target sequences for PCR detection of Vibrio parahaemolyticus by genome comparison. Journal of Rapid Methods and Automation in Microbiology17, 67-79.
-
(2009)
Journal of Rapid Methods and Automation in Microbiology
, vol.17
, pp. 67-79
-
-
Zhu, D.1
Zhou, M.2
Fan, Y.3
Shi, X.4
|