메뉴 건너뛰기




Volumn 12, Issue 7, 2017, Pages

Charged amino acid variability related to N-glyco -sylation and epitopes in A/H3N2 influenza: Hem -agglutinin and neuraminidase

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; EPITOPE; INFLUENZA VIRUS HEMAGGLUTININ; SIALIDASE; VIRUS ANTIGEN; VIRUS RNA;

EID: 85026996275     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0178231     Document Type: Article
Times cited : (8)

References (32)
  • 1
    • 84897961907 scopus 로고    scopus 로고
    • Prevalence, genetic drift of haemagglutinin, and antiviral resistance of influenza A/H3N2 viruses circulating in Shanghai in children during 2009–2012
    • PMID: 24523140
    • Cai J, Wang X, Zhao B, Yao W, Wang X, Zhu Q, et al. Prevalence, genetic drift of haemagglutinin, and antiviral resistance of influenza A/H3N2 viruses circulating in Shanghai in children during 2009–2012. Journal of Medical Virology. 2014; 86:1026–1033. https://doi.org/10.1002/jmv.23854 PMID: 24523140.
    • (2014) Journal of Medical Virology , vol.86 , pp. 1026-1033
    • Cai, J.1    Wang, X.2    Zhao, B.3    Yao, W.4    Wang, X.5    Zhu, Q.6
  • 2
    • 84979941589 scopus 로고    scopus 로고
    • Start of the 2014/15 influenza season in Europe: Drifted influenza a(H3N2) viruses circulate as dominant subtype
    • PMID: 25655052
    • Broberg E, Snacken R, Adlhoch C, Beaute J, Galinska M, Pereyaslov D, et al. Start of the 2014/15 influenza season in Europe: drifted influenza A(H3N2) viruses circulate as dominant subtype. Euro Surveill. 2015; 20. PMID: 25655052.
    • (2015) Euro Surveill , pp. 20
    • Broberg, E.1    Snacken, R.2    Adlhoch, C.3    Beaute, J.4    Galinska, M.5    Pereyaslov, D.6
  • 3
    • 85013758876 scopus 로고    scopus 로고
    • Trivalent inactivated influenza vaccine effective against influenza a(H3N2) variant viruses in children during the 2014/15 season, Japan
    • PMID: 27784529
    • Sugaya N, Shinjoh M, Kawakami C, Yamaguchi Y, Yoshida M, Baba H, et al. Trivalent inactivated influenza vaccine effective against influenza A(H3N2) variant viruses in children during the 2014/15 season, Japan. Euro Surveill. 2016; 21. https://doi.org/10.2807/1560-7917.ES.2016.21.42.30377 PMID: 27784529.
    • (2016) Euro Surveill , pp. 21
    • Sugaya, N.1    Shinjoh, M.2    Kawakami, C.3    Yamaguchi, Y.4    Yoshida, M.5    Baba, H.6
  • 4
    • 84973636355 scopus 로고    scopus 로고
    • Influenza activity—United States, 2015–16 season and composition of the 2016–17 influenza vaccine
    • Jun 10, PMID: 27281364
    • Davlin SL, Blanton L, Kniss K, Mustaquim D, Smith S, Kramer N, et al. Influenza Activity—United States, 2015–16 Season and Composition of the 2016–17 Influenza Vaccine. MMWR Morb Mortal Wkly Rep. 2016 Jun 10; 65(22):567–575. https://doi.org/10.15585/mmwr.mm6522a3 PMID: 27281364.
    • (2016) MMWR Morb Mortal Wkly Rep , vol.65 , Issue.22 , pp. 567-575
    • Davlin, S.L.1    Blanton, L.2    Kniss, K.3    Mustaquim, D.4    Smith, S.5    Kramer, N.6
  • 5
    • 84958256208 scopus 로고    scopus 로고
    • Concurrent epidemics of influenza A/H3N2 and A/H1N1pdm in southern China: A serial cross-sectional study
    • PMID: 26747013
    • Wu C, Wang MH, Lu X, Chong KC, He J, Yau CY, et al. Concurrent epidemics of influenza A/H3N2 and A/H1N1pdm in Southern China: A serial cross-sectional study. J Infect. 2016; 72:369–376. https://doi.org/10.1016/j.jinf.2015.12.013 PMID: 26747013.
    • (2016) J Infect , vol.72 , pp. 369-376
    • Wu, C.1    Wang, M.H.2    Lu, X.3    Chong, K.C.4    He, J.5    Yau, C.Y.6
  • 6
    • 84888151322 scopus 로고    scopus 로고
    • Genetic mutations in influenza H3N2 viruses from a 2012 epidemic in southern China
    • PMID: 24279698
    • Zhong J, Liang L, Huang P, Zhu X, Zou L, Yu S, et al. Genetic mutations in influenza H3N2 viruses from a 2012 epidemic in Southern China. Virol J. 2013; 10:345. https://doi.org/10.1186/1743-422X-10-345PMID: 24279698.
    • (2013) Virol J , vol.10 , pp. 345
    • Zhong, J.1    Liang, L.2    Huang, P.3    Zhu, X.4    Zou, L.5    Yu, S.6
  • 7
    • 84901981487 scopus 로고    scopus 로고
    • Conserved neutralizing epitope at globular head of hemagglutinin in H3N2 influenza viruses
    • PMID: 24719430
    • Iba Y, Fujii Y, Ohshima N, Sumida T, Kubota-Koketsu R, Ikeda M, et al. Conserved Neutralizing Epitope at Globular Head of Hemagglutinin in H3N2 Influenza Viruses. Journal of Virology. 2014; 88:7130–7144. https://doi.org/10.1128/JVI.00420-14 PMID: 24719430.
    • (2014) Journal of Virology , vol.88 , pp. 7130-7144
    • Iba, Y.1    Fujii, Y.2    Ohshima, N.3    Sumida, T.4    Kubota-Koketsu, R.5    Ikeda, M.6
  • 8
    • 84908374176 scopus 로고    scopus 로고
    • Broad protection against avian influenza virus by using a modified vaccinia Ankara virus expressing a mosaic hemagglutinin gene
    • PMID: 25210173
    • Kamlangdee A, Kingstad-Bakke B, Anderson TK, Goldberg TL, Osorio JE. Broad protection against avian influenza virus by using a modified vaccinia Ankara virus expressing a mosaic hemagglutinin gene. J Virol. 2014; 88:13300–13309. https://doi.org/10.1128/JVI.01532-14 PMID: 25210173.
    • (2014) J Virol , vol.88 , pp. 13300-13309
    • Kamlangdee, A.1    Kingstad-Bakke, B.2    Anderson, T.K.3    Goldberg, T.L.4    Osorio, J.E.5
  • 9
    • 84883300838 scopus 로고    scopus 로고
    • Single hemagglutinin mutations that alter both antigenicity and receptor binding avidity influence influenza virus antigenic clustering
    • PMID: 23824816
    • Li Y, Bostick DL, Sullivan CB, Myers JL, Griesemer SB, StGeorge K, et al. Single Hemagglutinin Mutations That Alter both Antigenicity and Receptor Binding Avidity Influence Influenza Virus Antigenic Clustering. Journal of Virology. 2013; 87:9904–9910. https://doi.org/10.1128/JVI.01023-13 PMID: 23824816.
    • (2013) Journal of Virology , vol.87 , pp. 9904-9910
    • Li, Y.1    Bostick, D.L.2    Sullivan, C.B.3    Myers, J.L.4    Griesemer, S.B.5    StGeorge, K.6
  • 10
    • 84953911279 scopus 로고    scopus 로고
    • Ph-dependent formation and disintegration of the influenza a virus protein scaffold to provide tension for membrane fusion
    • PMID: 26468548
    • Batishchev OV, Shilova LA, Kachala MV, Tashkin VY, Sokolov VS, Fedorova NV, et al. pH-Dependent Formation and Disintegration of the Influenza A Virus Protein Scaffold To Provide Tension for Membrane Fusion. J Virol. 2015; 90:575–585. https://doi.org/10.1128/JVI.01539-15 PMID: 26468548.
    • (2015) J Virol , vol.90 , pp. 575-585
    • Batishchev, O.V.1    Shilova, L.A.2    Kachala, M.V.3    Tashkin, V.Y.4    Sokolov, V.S.5    Fedorova, N.V.6
  • 11
    • 84863766440 scopus 로고    scopus 로고
    • Compensatory evolution of net-charge in influenza a virus hemagglutinin
    • PMID: 22808159
    • Kobayashi Y, Suzuki Y. Compensatory evolution of net-charge in influenza A virus hemagglutinin. PLoS One. 2012; 7:e40422. https://doi.org/10.1371/journal.pone.0040422 PMID: 22808159.
    • (2012) Plos One , vol.7 , pp. e40422
    • Kobayashi, Y.1    Suzuki, Y.2
  • 13
    • 84924985609 scopus 로고    scopus 로고
    • N-linked glycans on influenza a H3N2 hemagglutinin constrain binding of host antibodies, but shielding is limited
    • PMID: 25227423
    • Pentiah K, Lees WD, Moss DS, Shepherd AJ. N-Linked glycans on influenza A H3N2 hemagglutinin constrain binding of host antibodies, but shielding is limited. Glycobiology. 2014; 25:124–132. https://doi.org/10.1093/glycob/cwu097 PMID: 25227423.
    • (2014) Glycobiology , vol.25 , pp. 124-132
    • Pentiah, K.1    Lees, W.D.2    Moss, D.S.3    Shepherd, A.J.4
  • 14
    • 34547553697 scopus 로고    scopus 로고
    • Simultaneous amino acid substitutions at antigenic sites drive influenza a hemagglutinin evolution
    • PMID: 17395716
    • Shih AC, Hsiao TC, Ho MS, Li WH. Simultaneous amino acid substitutions at antigenic sites drive influenza A hemagglutinin evolution. Proc Natl Acad Sci U S A. 2007; 104:6283–6288. https://doi.org/10.1073/pnas.0701396104 PMID: 17395716.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 6283-6288
    • Shih, A.C.1    Hsiao, T.C.2    Ho, M.S.3    Li, W.H.4
  • 15
    • 84973598715 scopus 로고    scopus 로고
    • Insert engineering and solubility screening improves recovery of virus-like particle subunits displaying hydrophobic epitopes
    • PMID: 26401641
    • Abidin RS, Lua LH, Middelberg AP, Sainsbury F. Insert engineering and solubility screening improves recovery of virus-like particle subunits displaying hydrophobic epitopes. Protein Sci. 2015; 24:1820–1828. https://doi.org/10.1002/pro.2775 PMID: 26401641.
    • (2015) Protein Sci , vol.24 , pp. 1820-1828
    • Abidin, R.S.1    Lua, L.H.2    Middelberg, A.P.3    Sainsbury, F.4
  • 16
    • 85006479376 scopus 로고    scopus 로고
    • Determination of antigenicity-altering patches on the major surface protein of human influenza A/H3N2 viruses
    • PMID: 27774294
    • Kratsch C, Klingen TR, Mümken L, Steinbrück L, McHardy AC. Determination of antigenicity-altering patches on the major surface protein of human influenza A/H3N2 viruses. Virus Evolution. 2016; 2:v25. https://doi.org/10.1093/ve/vev025 PMID: 27774294.
    • (2016) Virus Evolution , vol.2 , pp. v25
    • Kratsch, C.1    Klingen, T.R.2    Mümken, L.3    Steinbrück, L.4    McHardy, A.C.5
  • 17
    • 84973636355 scopus 로고    scopus 로고
    • Influenza activity—United States, 2015–16 season and composition of the 2016–17 influenza vaccine
    • PMID: 27281364
    • Davlin SL, Blanton L, Kniss K, Mustaquim D, Smith S, Kramer N, et al. Influenza Activity—United States, 2015–16 Season and Composition of the 2016–17 Influenza Vaccine. MMWR Morb Mortal Wkly Rep. 2016; 65:567–575. https://doi.org/10.15585/mmwr.mm6522a3 PMID: 27281364.
    • (2016) MMWR Morb Mortal Wkly Rep , vol.65 , pp. 567-575
    • Davlin, S.L.1    Blanton, L.2    Kniss, K.3    Mustaquim, D.4    Smith, S.5    Kramer, N.6
  • 18
    • 84876011740 scopus 로고    scopus 로고
    • Phylogenetic, molecular and drug-sensitivity analysis of ha and na genes of human H3N2 influenza a viruses in guangdong, China, 2007–2011
    • PMID: 22827898
    • Huang P, Liang LJ, Hou NM, Zhang X, Su WZ, Yu SY, et al. Phylogenetic, molecular and drug-sensitivity analysis of HA and NA genes of human H3N2 influenza A viruses in Guangdong, China, 2007–2011. Epidemiol Infect. 2013; 141:1061–1069. https://doi.org/10.1017/S0950268812001318 PMID: 22827898.
    • (2013) Epidemiol Infect , vol.141 , pp. 1061-1069
    • Huang, P.1    Liang, L.J.2    Hou, N.M.3    Zhang, X.4    Su, W.Z.5    Yu, S.Y.6
  • 19
    • 85022158148 scopus 로고    scopus 로고
    • Mega7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets
    • PMID: 27004904
    • Kumar S, Stecher G, Tamura K. MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. Mol Biol Evol. 2016; 33:1870–1874. https://doi.org/10.1093/molbev/msw054 PMID: 27004904.
    • (2016) Mol Biol Evol , vol.33 , pp. 1870-1874
    • Kumar, S.1    Stecher, G.2    Tamura, K.3
  • 20
    • 84879370411 scopus 로고    scopus 로고
    • Molecular evolution of attachment glycoprotein (g) gene in human respiratory syncytial virus detected in Japan 2008–2011
    • PMID: 23707845
    • Kushibuchi I, Kobayashi M, Kusaka T, Tsukagoshi H, Ryo A, Yoshida A, et al. Molecular evolution of attachment glycoprotein (G) gene in human respiratory syncytial virus detected in Japan 2008–2011. Infect Genet Evol. 2013; 18:168–173. https://doi.org/10.1016/j.meegid.2013.05.010 PMID: 23707845.
    • (2013) Infect Genet Evol , vol.18 , pp. 168-173
    • Kushibuchi, I.1    Kobayashi, M.2    Kusaka, T.3    Tsukagoshi, H.4    Ryo, A.5    Yoshida, A.6
  • 21
    • 84921482027 scopus 로고    scopus 로고
    • Structure and receptor binding preferences of recombinant human a(H3N2) virus hemagglutinins
    • PMID: 25617824
    • Yang H, Carney PJ, Chang JC, Guo Z, Villanueva JM, Stevens J. Structure and receptor binding preferences of recombinant human A(H3N2) virus hemagglutinins. Virology. 2015; 477:18–31. https://doi.org/10.1016/j.virol.2014.12.024 PMID: 25617824.
    • (2015) Virology , vol.477 , pp. 18-31
    • Yang, H.1    Carney, P.J.2    Chang, J.C.3    Guo, Z.4    Villanueva, J.M.5    Stevens, J.6
  • 22
    • 84946160077 scopus 로고    scopus 로고
    • Rrdistmaps: A ucsf chimera tool for viewing and comparing protein distance maps
    • PMID: 25540183
    • Chen JE, Huang CC, Ferrin TE. RRDistMaps: a UCSF Chimera tool for viewing and comparing protein distance maps. Bioinformatics. 2015; 31:1484–1486. https://doi.org/10.1093/bioinformatics/btu841PMID: 25540183.
    • (2015) Bioinformatics , vol.31 , pp. 1484-1486
    • Chen, J.E.1    Huang, C.C.2    Ferrin, T.E.3
  • 23
    • 79251480393 scopus 로고    scopus 로고
    • Glycosylation focuses sequence variation in the influenza a virus H1 hemagglutinin globular domain
    • PMID: 21124818
    • Das SR, Puigbo P, Hensley SE, Hurt DE, Bennink JR, Yewdell JW. Glycosylation focuses sequence variation in the influenza A virus H1 hemagglutinin globular domain. PLoS Pathog. 2010; 6:e1001211. https://doi.org/10.1371/journal.ppat.1001211 PMID: 21124818.
    • (2010) Plos Pathog , vol.6 , pp. e1001211
    • Das, S.R.1    Puigbo, P.2    Hensley, S.E.3    Hurt, D.E.4    Bennink, J.R.5    Yewdell, J.W.6
  • 24
    • 23944444061 scopus 로고    scopus 로고
    • Influenza associated excess mortality in Germany, 1985–2001
    • PMID: 15969758
    • Zucs P, Buchholz U, Haas W, Uphoff H. Influenza associated excess mortality in Germany, 1985–2001. Emerg Themes Epidemiol. 2005; 2:6. https://doi.org/10.1186/1742-7622-2-6 PMID: 15969758.
    • (2005) Emerg Themes Epidemiol , vol.2 , pp. 6
    • Zucs, P.1    Buchholz, U.2    Haas, W.3    Uphoff, H.4
  • 25
    • 84994608332 scopus 로고    scopus 로고
    • Outbreak of influenza a(H3N2) variant virus infections among persons attending agricultural fairs housing infected swine—Michigan and Ohio, July-August 2016
    • PMID: 27787493
    • Schicker RS, Rossow J, Eckel S, Fisher N, Bidol S, Tatham L, et al. Outbreak of Influenza A(H3N2) Variant Virus Infections Among Persons Attending Agricultural Fairs Housing Infected Swine—Michigan and Ohio, July-August 2016. MMWR Morb Mortal Wkly Rep. 2016; 65(42):1157–1160. https://doi.org/ 10.15585/mmwr.mm6542a1 PMID: 27787493.
    • (2016) MMWR Morb Mortal Wkly Rep , vol.65 , Issue.42 , pp. 1157-1160
    • Schicker, R.S.1    Rossow, J.2    Eckel, S.3    Fisher, N.4    Bidol, S.5    Tatham, L.6
  • 26
    • 84976371979 scopus 로고    scopus 로고
    • Phylogenetic analysis and pathogenicity of h3 subtype avian influenza viruses isolated from live poultry markets in China
    • PMID: 27270298
    • Cui H, Shi Y, Ruan T, Li X, Teng Q, Chen H, et al. Phylogenetic analysis and pathogenicity of H3 subtype avian influenza viruses isolated from live poultry markets in China. Sci Rep. 2016; 6:27360. https://doi.org/10.1038/srep27360 PMID: 27270298.
    • (2016) Sci Rep. , vol.6 , pp. 27360
    • Cui, H.1    Shi, Y.2    Ruan, T.3    Li, X.4    Teng, Q.5    Chen, H.6
  • 27
    • 84923916101 scopus 로고    scopus 로고
    • The acquisition of novel n-glycosylation sites in conserved proteins during human evolution
    • PMID: 25628020
    • Kim DS, Hahn Y. The acquisition of novel N-glycosylation sites in conserved proteins during human evolution. BMC Bioinformatics. 2015; 16:29. https://doi.org/10.1186/s12859-015-0468-5 PMID: 25628020.
    • (2015) BMC Bioinformatics , vol.16 , pp. 29
    • Kim, D.S.1    Hahn, Y.2
  • 28
    • 84994013705 scopus 로고    scopus 로고
    • Glycosylation changes in the globular head of H3N2 influenza hemagglutinin modulate receptor binding without affecting virus virulence
    • PMID: 27796371
    • Alymova IV, York IA, Air GM, Cipollo JF, Gulati S, Baranovich T, et al. Glycosylation changes in the globular head of H3N2 influenza hemagglutinin modulate receptor binding without affecting virus virulence. Sci Rep. 2016; 6:36216. https://doi.org/10.1038/srep36216 PMID: 27796371.
    • (2016) Sci Rep , vol.6 , pp. 36216
    • Alymova, I.V.1    York, I.A.2    Air, G.M.3    Cipollo, J.F.4    Gulati, S.5    Baranovich, T.6
  • 29
    • 84888024210 scopus 로고    scopus 로고
    • Substitutions near the receptor binding site determine major antigenic change during influenza virus evolution
    • PMID: 24264991
    • Koel BF, Burke DF, Bestebroer TM, van der Vliet S, Zondag GC, Vervaet G, et al. Substitutions near the receptor binding site determine major antigenic change during influenza virus evolution. Science. 2013; 342:976–979. https://doi.org/10.1126/science.1244730 PMID: 24264991.
    • (2013) Science , vol.342 , pp. 976-979
    • Koel, B.F.1    Burke, D.F.2    Bestebroer, T.M.3    Van Der Vliet, S.4    Zondag, G.C.5    Vervaet, G.6
  • 30
    • 85008676961 scopus 로고    scopus 로고
    • Amino acids in hemagglutinin antigenic site b determine antigenic and receptor binding differences between a(H3N2)v and ancestral seasonal H3N2 influenza viruses
    • PMID: 27807224
    • Wang X, Ilyushina NA, Lugovtsev VY, Bovin NV, Couzens LK, Gao J, et al. Amino Acids in Hemagglutinin Antigenic Site B Determine Antigenic and Receptor Binding Differences between A(H3N2)v and Ancestral Seasonal H3N2 Influenza Viruses. J Virol. 2016:1512–1516. https://doi.org/10.1128/JVI. 01512-16 PMID: 27807224.
    • (2016) J Virol , pp. 1512-1516
    • Wang, X.1    Ilyushina, N.A.2    Lugovtsev, V.Y.3    Bovin, N.V.4    Couzens, L.K.5    Gao, J.6
  • 31
    • 84874023859 scopus 로고    scopus 로고
    • Highly conserved antigenic epitope regions of hemagglutinin and neuraminidase genes between 2009 H1N1 and seasonal H1N1 influenza: Vaccine considerations
    • PMID: 23433453
    • Huang P, Yu S, Wu C, Liang L. Highly conserved antigenic epitope regions of hemagglutinin and neuraminidase genes between 2009 H1N1 and seasonal H1N1 influenza: vaccine considerations. J Transl Med. 2013; 11:47. https://doi.org/10.1186/1479-5876-11-47 PMID: 23433453.
    • (2013) J Transl Med , vol.11 , pp. 47
    • Huang, P.1    Yu, S.2    Wu, C.3    Liang, L.4
  • 32
    • 84961221445 scopus 로고    scopus 로고
    • Characterisation of the epidemic strain of h3n8 equine influenza virus responsible for outbreaks in South America in 2012
    • PMID: 26993620
    • Alves BE, Woodward A, Rash A, Dos SFL, Fernandes AA, Alfieri AA, et al. Characterisation of the epidemic strain of H3N8 equine influenza virus responsible for outbreaks in South America in 2012. Virol J. 2016; 13:45. https://doi.org/10.1186/s12985-016-0503-9 PMID: 26993620.
    • (2016) Virol J , vol.13 , pp. 45
    • Alves, B.E.1    Woodward, A.2    Rash, A.3    Dos, S.F.L.4    Fernandes, A.A.5    Alfieri, A.A.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.