Phylogenetic analysis and pathogenicity of H3 subtype avian influenza viruses isolated from live poultry markets in China

Scientific Reports

Volumn 6, Issue , 2016, Pages

  Cui, Hongrui ^a   Shi, Ying ^a   Ruan, Tao ^a   Li, Xuesong ^a   Teng, Qiaoyang ^a   Chen, Hongjun ^a   Yang, Jianmei ^a   Liu, Qinfang ^a   Li, Zejun ^a  

^a INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL EXPERIMENT; AVIAN INFLUENZA VIRUS; CHICKEN; CHINA; CROSS REACTION; GENETIC REASSORTMENT; GENOME; INFLUENZA A VIRUS (H3N2); INFLUENZA A VIRUS (H3N8); KOREA; LUNG; MARKET; NONHUMAN; PATHOGENICITY; PHYLOGENETIC TREE; POULTRY; TURBINATE; UNITED STATES; ANIMAL; AVIAN INFLUENZA; CLASSIFICATION; CLUSTER ANALYSIS; DISEASE MODEL; DNA SEQUENCE; GENETIC VARIATION; GENETICS; IMMUNOLOGY; ISOLATION AND PURIFICATION; MOUSE; ORTHOMYXOVIRUS INFECTION; PATHOLOGY; PHYLOGENY; VIROLOGY; WHOLE GENOME SEQUENCING;

INFLUENZA VIRUS HEMAGGLUTININ; VIRUS ANTIBODY; VIRUS RNA;

ANIMALS; ANTIBODIES, VIRAL; CHINA; CLUSTER ANALYSIS; CROSS REACTIONS; DISEASE MODELS, ANIMAL; GENETIC VARIATION; HEMAGGLUTININ GLYCOPROTEINS, INFLUENZA VIRUS; INFLUENZA A VIRUS, H3N2 SUBTYPE; INFLUENZA A VIRUS, H3N8 SUBTYPE; INFLUENZA IN BIRDS; MICE; ORTHOMYXOVIRIDAE INFECTIONS; PHYLOGENY; POULTRY; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; WHOLE GENOME SEQUENCING;

EID: 84976371979     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep27360     Document Type: Article

References (50)

1. Webster, R. G., Bean, W. J., Gorman, O. T., Chambers, T. M. & Kawaoka, Y. Evolution and ecology of influenza A viruses. Curr Top Microbiol Immunol 56, 152-179 (1992).
2. Garten, R. J. et al. Antigenic and genetic characteristics of swine-origin 2009 A (H1N1) influenza viruses circulating in humans. Science 325, 197-201 (2009).
3. Pappas, C. et al. Receptor specificity and transmission of H2N2 subtype viruses isolated from the pandemic of 1957. PloS One 5, e11158 (2010).
4. Scholtissek, C., Rohde, W. v., Von Hoyningen, V. & Rott, R. On the origin of the human influenza virus subtypes H2N2 and H3N2. Virology 87, 13-20 (1978).
5. Yang, D. et al. Genetic analysis of H3N2 avian influenza viruses isolated from live poultry markets and poultry slaughterhouses in Shanghai, China in 2013. Virus Genes 51, 25-32, doi: 10.1007/s11262-015-1198-5 (2015).
6. Tong, S. et al. New world bats harbor diverse influenza A viruses. PLoS Pathog 9, e1003657 (2013).
7. Wu, Y., Wu, Y., Tefsen, B., Shi, Y. & Gao, G. F. Bat-derived influenza-like viruses H17N10 and H18N11. Trends Microbiol 22, 183-191 (2014).
8. Morens, D. M. & Taubenberger, J. K. Historical thoughts on influenza viral ecosystems, or behold a pale horse, dead dogs, failing fowl, and sick swine. Influenza Other Respi Viruses 4, 327-337 (2010).
9. Taubenberger, J. K. & Kash, J. C. Influenza virus evolution, host adaptation, and pandemic formation. Cell Host Microbe 7, 440-451 (2010).
10. Bean, W. et al. Evolution of the H3 influenza virus hemagglutinin from human and nonhuman hosts. J Virol 66, 1129-1138 (1992).
11. Yoon, S.-W., Webby, R. J. & Webster, R. G. Evolution and ecology of influenza A viruses. Curr Top Microbiol Immunol 385, 359-375 (2014).
12. Song, M.-S. et al. Ecology of H3 avian influenza viruses in Korea and assessment of their pathogenic potentials. J Gen Virol 89, 949-957 (2008).
13. Pu, J. et al. Genetic analysis of H3 subtype influenza viruses isolated from domestic ducks in northern China during 2004-2005. Virus Genes 38, 136-142 (2009).
14. Zhou, H., Zhang, A., Chen, H. & Jin, M. Emergence of novel reassortant H3N2 influenza viruses among ducks in China. Arch Virol 156, 1045-1048 (2011).
15. Song, D. et al. Transmission of avian influenza virus (H3N2) to dogs. Emerg Infect Dis 14, 741 (2008).
16. Castrucci, M. R. et al. Genetic reassortment between avian and human influenza A viruses in Italian pigs. Virology 193, 503-506 (1993).
17. Kahn, R. E., Ma, W. & Richt, J. A. Swine and influenza: A challenge to one health research. Curr Top Microbiol Immunol 385, 205-218 (2014).
18. Li, S. et al. Avian-origin H3N2 canine influenza A viruses in Southern China. Infect Genet Evol 10, 1286-1288 (2010).
19. Song, D. et al. Experimental infection of dogs with avian-origin canine influenza A virus (H3N2). Emerg Infect Dis 15, 56 (2009).
20. Bean, W. J. et al. Evolution of the H3 influenza virus hemagglutinin from human and nonhuman hosts. J Virol 66, 1129-1138 (1992).
21. Waddell, G. H., Teigland, M. B. & Sigel, M. M. A New Influenza Virus Associated with Equine Respiratory Disease. J Am Vet Med Assoc 143, 587-590 (1963).
22. Guo, Y. et al. Characterization of a new avian-like influenza A virus from horses in China. Virology 188, 245-255 (1992).
23. Crawford, P. C. et al. Transmission of equine influenza virus to dogs. Science 310, 482-485, doi: 10.1126/science.1117950 (2005).
24. Anthony, S. J. et al. Emergence of fatal avian influenza in New England harbor seals. mBio 3, e00166-00112, doi: 10.1128/mBio.00166-12 (2012).
25. Li, C., Yu, M., Liu, L. & Sun, H. Characterization of a novel H3N2 influenza virus isolated from domestic ducks in China. Virus Genes, doi: 10.1007/s11262-016-1323-0 (2016).
26. Yu, H. et al. Effect of closure of live poultry markets on poultry-To-person transmission of avian influenza A H7N9 virus: An ecological study. Lancet 383, 541-548 (2014).
27. Gilbert, M. et al. Predicting the risk of avian influenza A H7N9 infection in live-poultry markets across Asia. Nat Commun 5, 4116 (2014).
28. Wu, D. et al. Poultry farms as a source of avian influenza A (H7N9) virus reassortment and human infection. Sci Rep 5, 7630, doi: 10.1038/srep07630 (2015).
29. Wang, Y. et al. Towards a better understanding of the novel avian-origin H7N9 influenza A virus in China. Sci Rep 3, 2318, doi: 10.1038/srep02318 (2013).
30. Teng, Q. et al. Development of a TaqMan MGB RT-PCR for the rapid detection of H3 subtype avian influenza virus circulating in China. J Virol Methods 217, 64-69 (2015).
31. Hoffmann, E., Stech, J., Guan, Y., Webster, R. & Perez, D. Universal primer set for the full-length amplification of all influenza A viruses. Arch Virol 146, 2275-2289 (2001).
32. Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30, 2725-2729 (2013).
33. Reed, L. J. & Muench, H. A simple method of estimating fifty per cent endpoints. Am J Epidemiol 27, 493-497 (1938).
34. Klimov, A. et al. Influenza virus titration, antigenic characterization, and serological methods for antibody detection. J Intell Mater Syst Struct 865, 107-116 (2012).
35. Min-Suk, S. et al. Unique Determinants of Neuraminidase Inhibitor Resistance among N3, N7, and N9 Avian Influenza Viruses. J Virol 89, 10891-10900 (2015).
36. Liu, Q. et al. Emergence of a novel drug resistant H7N9 influenza virus: evidence based clinical potential of a natural IFN-Alpha for infection control and treatment. Expert Rev Anti Infect Ther 12, 165-169, doi: 10.1586/14787210.2014.870885 (2014).
37. Andreas, L. B., Eddy, M. T., Chou, J. J. & Griffin, R. G. Magic-Angle-spinning NMR of the drug resistant S31N M2 proton transporter from influenza A. J Am Chem Soc 134, 7215-7218 (2012).
38. Liu, M. et al. The influenza virus gene pool in a poultry market in South central china. Virology 305, 267-275 (2003).
39. Choi, J. G. et al. Genetic relationship of H3 subtype avian influenza viruses isolated from domestic ducks and wild birds in Korea and their pathogenic potential in chickens and ducks. Vet Microbiol 155, 147-157, doi: 10.1016/j.vetmic.2011.08.028 (2012).
40. Song, D. et al. Transmission of avian influenza virus (H3N2) to dogs. Emerg Infect Dis 14, 741-746, doi: 10.3201/eid1405.071471 (2008).
41. Crispe, E., Finlaison, D. S., Hurt, A. C. & Kirkland, P. D. Infection of dogs with equine influenza virus: evidence for transmission from horses during the Australian outbreak. Aust Vet J 89 Suppl 1, 27-28 (2011).
42. Su, S. et al. Equine influenza A(H3N8) virus infection in cats. Emerg Infect Dis 20, 2096-2099, doi: 10.3201/eid2012.140867 (2014).
43. Cappuccio, J. A. et al. Outbreak of swine influenza in Argentina reveals a non-contemporary human H3N2 virus highly transmissible among pigs. J Gen Virol 92, 2871-2878, doi: 10.1099/vir.0.036590-0 (2011).
44. Rajao, D. S. et al. Novel reassortant human-like H3N2 and H3N1 influenza A viruses detected in pigs are virulent and antigenically distinct from endemic viruses. J Virol 89(22), 11213-11222 (2015).
45. Liang, L. et al. Genetics, receptor binding, replication and transmission in mammals of H4 avian influenza viruses isolated from live poultry markets in China. J Virol, doi: 10.1128/JVI.02692-15 (2015).
46. Obenauer, J. C. et al. Large-scale sequence analysis of avian influenza isolates. Science 311, 1576-1580 (2006).
47. Hall, J. S., Dusek, R. J. & Spackman, E. Rapidly Expanding Range of Highly Pathogenic Avian Influenza Viruses. Emerg Infect Dis 21, 1251-1252 (2015).
48. Kang, H. M. et al. Novel reassortant influenza A(H5N8) viruses among inoculated domestic and wild ducks, South Korea, 2014. Emerg Infect Dis 21, 298-304 (2015).
49. Zhao, K. et al. Characterization of three H5N5 and one H5N8 highly pathogenic avian influenza viruses in China. Vet Microbiol 163, 351-357 (2013).
50. Pulit-Penaloza, J. A. et al. Pathogenesis and Transmission of Novel Highly Pathogenic Avian Influenza H5N2 and H5N8 Viruses in Ferrets and Mice. J Virol 89, 10286-10293 (2015).