RRDistMaps: A UCSF Chimera tool for viewing and comparing protein distance maps

Bioinformatics

Volumn 31, Issue 9, 2015, Pages 1484-1486

  Chen, Jonathan E ^a   Huang, Conrad C ^b   Ferrin, Thomas E ^b  

^a Lowell High School   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN; PROTEIN BINDING;

BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER PROGRAM; PROTEIN CONFORMATION;

BINDING SITES; MODELS, MOLECULAR; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEINS; SOFTWARE;

EID: 84946160077     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu841     Document Type: Article

References (7)

1. Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res., 32, 1792-1797.
2. Holm, L. and Sander, C. (1993) Protein structure comparison by alignment of distance matrices. J. Mol. Biol., 233, 123-138.
3. Huang, C.C. et al. (2014) Enhancing UCSF Chimera through web services. Nucleic Acids Res., 42, 478-484.
4. Needleman, S.B. and Wunsch, C.D. (1970) A general method applicable to the search for similarities in the ammo acid sequence of two proteins. J. Mol. Biol., 48, 443.
5. Pettersen, E.F. et al. (2004) UCSF Chimera-a visualization system for exploratory research and analysis. J. Comput. Chem., 25, 1605-1612.
6. Vehlow, C. et al. (2011). CMView: interactive contact map visualization and analysis. Bioinformatics, 27, 1573-1574.
7. Wu, S. et al. (2008) A comprehensive assessment of sequence-based and template-based methods for protein contact prediction. Bioinformatics, 24, 924-931.