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Volumn 18, Issue 1, 2017, Pages

Erratum: Quantitative metagenomics reveals unique gut microbiome biomarkers in ankylosing spondylitis. [Arthritis Rheumatol., 67 (2015) (686-691)] DOI: 10.1186/s13059-017-1271-6;Quantitative metagenomics reveals unique gut microbiome biomarkers in ankylosing spondylitis

Author keywords

Ankylosing spondylitis; Biomarkers; Human gut microbiome; Pathogenesis

Indexed keywords

BIOLOGICAL MARKER; PROBIOTIC AGENT;

EID: 85026387191     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/s13059-017-1352-6     Document Type: Erratum
Times cited : (277)

References (48)
  • 1
    • 84873325407 scopus 로고    scopus 로고
    • Immunogenetic study in Chinese population with ankylosing spondylitis: are there specific genes recently disclosed?
    • Zhai J, Rong J, Li Q, Gu J. Immunogenetic study in Chinese population with ankylosing spondylitis: are there specific genes recently disclosed? Clin Dev Immunol. 2013;2013:419357.
    • (2013) Clin Dev Immunol , vol.2013 , pp. 419357
    • Zhai, J.1    Rong, J.2    Li, Q.3    Gu, J.4
  • 2
    • 79957505703 scopus 로고    scopus 로고
    • Population-based estimates of common comorbidities and cardiovascular disease in ankylosing spondylitis
    • Bremander A, Petersson IF, Bergman S, Englund M. Population-based estimates of common comorbidities and cardiovascular disease in ankylosing spondylitis. Arthritis Care Res. 2011;63:550-6.
    • (2011) Arthritis Care Res , vol.63 , pp. 550-556
    • Bremander, A.1    Petersson, I.F.2    Bergman, S.3    Englund, M.4
  • 3
    • 34250756172 scopus 로고    scopus 로고
    • Ankylosing spondylitis is linked to Klebsiella--the evidence
    • Rashid T, Ebringer A. Ankylosing spondylitis is linked to Klebsiella--the evidence. Clin Rheumatol. 2007;26:858-64.
    • (2007) Clin Rheumatol , vol.26 , pp. 858-864
    • Rashid, T.1    Ebringer, A.2
  • 4
    • 84956807918 scopus 로고    scopus 로고
    • Genetics of ankylosing spondylitis--insights into pathogenesis
    • Brown MA, Kenna T, Wordsworth BP. Genetics of ankylosing spondylitis--insights into pathogenesis. Nat Rev Rheumatol. 2016;12:81-91.
    • (2016) Nat Rev Rheumatol , vol.12 , pp. 81-91
    • Brown, M.A.1    Kenna, T.2    Wordsworth, B.P.3
  • 5
    • 84879691837 scopus 로고    scopus 로고
    • Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci
    • International Genetics of Ankylosing Spondylitis Consortium (IGAS), Cortes A, Hadler J, Pointon JP, Robinson PC, Karaderi T, et al. Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci. Nat Genet. 2013;45:730-8.
    • (2013) Nat Genet , vol.45 , pp. 730-738
    • Cortes, A.1    Hadler, J.2    Pointon, J.P.3    Robinson, P.C.4    Karaderi, T.5
  • 6
    • 75749085686 scopus 로고    scopus 로고
    • Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci
    • Australo-Anglo-American Spondyloarthritis Consortium (TASC), Reveille JD, Sims AM, Danoy P, Evans DM, Leo P, et al. Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci. Nat Genet. 2010;42:123-7.
    • (2010) Nat Genet , vol.42 , pp. 123-127
    • Reveille, J.D.1    Sims, A.M.2    Danoy, P.3    Evans, D.M.4    Leo, P.5
  • 7
    • 34547742519 scopus 로고    scopus 로고
    • A common genetic background for inflammatory bowel disease and ankylosing spondylitis: a genealogic study in Iceland
    • Thjodleifsson B, Geirsson AJ, Bjornsson S, Bjarnason I. A common genetic background for inflammatory bowel disease and ankylosing spondylitis: a genealogic study in Iceland. Arthritis Rheum. 2007;56:2633-9.
    • (2007) Arthritis Rheum , vol.56 , pp. 2633-2639
    • Thjodleifsson, B.1    Geirsson, A.J.2    Bjornsson, S.3    Bjarnason, I.4
  • 8
    • 85026387143 scopus 로고    scopus 로고
    • Exome-wide study of ankylosing spondylitis demonstrates additional shared genetic background with inflammatory bowel disease
    • Robinson PC, Leo PJ, Pointon JJ, Harris J, Cremin K, Bradbury LA, et al. Exome-wide study of ankylosing spondylitis demonstrates additional shared genetic background with inflammatory bowel disease. npj Genome Med. 2016;1:16008.
    • (2016) npj Genome Med , vol.1 , pp. 16008
    • Robinson, P.C.1    Leo, P.J.2    Pointon, J.J.3    Harris, J.4    Cremin, K.5    Bradbury, L.A.6
  • 9
    • 84884273778 scopus 로고    scopus 로고
    • Advances in inflammatory bowel disease pathogenesis: linking host genetics and the microbiome
    • Knights D, Lassen KG, Xavier RJ. Advances in inflammatory bowel disease pathogenesis: linking host genetics and the microbiome. Gut. 2013;62:1505-10.
    • (2013) Gut , vol.62 , pp. 1505-1510
    • Knights, D.1    Lassen, K.G.2    Xavier, R.J.3
  • 10
    • 84871826186 scopus 로고    scopus 로고
    • Autoimmunity in rheumatic diseases is induced by microbial infections via crossreactivity or molecular mimicry
    • Rashid T, Ebringer A. Autoimmunity in rheumatic diseases is induced by microbial infections via crossreactivity or molecular mimicry. Autoimmune Dis. 2012;2012:539282.
    • (2012) Autoimmune Dis , vol.2012 , pp. 539282
    • Rashid, T.1    Ebringer, A.2
  • 11
    • 0036905479 scopus 로고    scopus 로고
    • Comparison of the faecal microflora of patients with ankylosing spondylitis and controls using molecular methods of analysis
    • Stebbings S, Munro K, Simon MA, Tannock G, Highton J, Harmsen H, et al. Comparison of the faecal microflora of patients with ankylosing spondylitis and controls using molecular methods of analysis. Rheumatology. 2002;41:1395-401.
    • (2002) Rheumatology , vol.41 , pp. 1395-1401
    • Stebbings, S.1    Munro, K.2    Simon, M.A.3    Tannock, G.4    Highton, J.5    Harmsen, H.6
  • 12
    • 55949124035 scopus 로고    scopus 로고
    • Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients
    • Sokol H, Pigneur B, Watterlot L, Lakhdari O, Bermudez-Humaran LG, Gratadoux JJ, et al. Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients. Proc Natl Acad Sci. 2008;105:16731-6.
    • (2008) Proc Natl Acad Sci , vol.105 , pp. 16731-16736
    • Sokol, H.1    Pigneur, B.2    Watterlot, L.3    Lakhdari, O.4    Bermudez-Humaran, L.G.5    Gratadoux, J.J.6
  • 13
    • 34848889673 scopus 로고    scopus 로고
    • Communicable ulcerative colitis induced by T-bet deficiency in the innate immune system
    • Garrett WS, Lord GM, Punit S, Lugo-Villarino G, Mazmanian SK, Ito S, et al. Communicable ulcerative colitis induced by T-bet deficiency in the innate immune system. Cell. 2007;131:33-45.
    • (2007) Cell , vol.131 , pp. 33-45
    • Garrett, W.S.1    Lord, G.M.2    Punit, S.3    Lugo-Villarino, G.4    Mazmanian, S.K.5    Ito, S.6
  • 15
    • 84938817346 scopus 로고    scopus 로고
    • The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment
    • Zhang X, Zhang D, Jia H, Feng Q, Wang D, Liang D, et al. The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment. Nat Med. 2015;21:895-905.
    • (2015) Nat Med , vol.21 , pp. 895-905
    • Zhang, X.1    Zhang, D.2    Jia, H.3    Feng, Q.4    Wang, D.5    Liang, D.6
  • 17
    • 84908425997 scopus 로고    scopus 로고
    • Intestinal dysbiosis associated with systemic lupus erythematosus
    • Hevia A, Milani C, Lopez P, Cuervo A, Arboleya S, Duranti S, et al. Intestinal dysbiosis associated with systemic lupus erythematosus. MBio. 2014;5:e01548-01514.
    • (2014) MBio , vol.5 , pp. e01548-e01614
    • Hevia, A.1    Milani, C.2    Lopez, P.3    Cuervo, A.4    Arboleya, S.5    Duranti, S.6
  • 18
    • 84919932773 scopus 로고    scopus 로고
    • Decreased bacterial diversity characterizes the altered gut microbiota in patients with psoriatic arthritis, resembling dysbiosis in inflammatory bowel disease
    • Scher JU, Ubeda C, Artacho A, Attur M, Isaac S, Reddy SM, et al. Decreased bacterial diversity characterizes the altered gut microbiota in patients with psoriatic arthritis, resembling dysbiosis in inflammatory bowel disease. Arthritis Rheumatol. 2015;67:128-39.
    • (2015) Arthritis Rheumatol , vol.67 , pp. 128-139
    • Scher, J.U.1    Ubeda, C.2    Artacho, A.3    Attur, M.4    Isaac, S.5    Reddy, S.M.6
  • 19
  • 20
    • 84907225684 scopus 로고    scopus 로고
    • Alterations of the human gut microbiome in liver cirrhosis
    • Qin N, Yang F, Prifti E, Chen Y, Shao L, Guo J, et al. Alterations of the human gut microbiome in liver cirrhosis. Nature. 2014;513:59-64.
    • (2014) Nature , vol.513 , pp. 59-64
    • Qin, N.1    Yang, F.2    Prifti, E.3    Chen, Y.4    Shao, L.5    Guo, J.6
  • 21
    • 84905730165 scopus 로고    scopus 로고
    • An integrated catalog of reference genes in the human gut microbiome
    • Li J, Jia H, Cai X, Zhong H, Feng Q, Sunagawa S, et al. An integrated catalog of reference genes in the human gut microbiome. Nat Biotechnol. 2014;32:834-41.
    • (2014) Nat Biotechnol , vol.32 , pp. 834-841
    • Li, J.1    Jia, H.2    Cai, X.3    Zhong, H.4    Feng, Q.5    Sunagawa, S.6
  • 22
    • 84903187726 scopus 로고    scopus 로고
    • Population health: Immaturity in the gut microbial community
    • Costello EK, Relman DA. Population health: Immaturity in the gut microbial community. Nature. 2014;510:344-5.
    • (2014) Nature , vol.510 , pp. 344-345
    • Costello, E.K.1    Relman, D.A.2
  • 23
    • 84887323708 scopus 로고    scopus 로고
    • Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis
    • Scher JU, Sczesnak A, Longman RS, Segata N, Ubeda C, Bielski C, et al. Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis. Elife. 2013;2:e01202.
    • (2013) Elife , vol.2
    • Scher, J.U.1    Sczesnak, A.2    Longman, R.S.3    Segata, N.4    Ubeda, C.5    Bielski, C.6
  • 24
    • 84856011484 scopus 로고    scopus 로고
    • Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease
    • Greenblum S, Turnbaugh PJ, Borenstein E. Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease. Proc Natl Acad Sci. 2012;109:594-9.
    • (2012) Proc Natl Acad Sci , vol.109 , pp. 594-599
    • Greenblum, S.1    Turnbaugh, P.J.2    Borenstein, E.3
  • 25
    • 3242686148 scopus 로고    scopus 로고
    • Bifidobacterial species differentially affect expression of cell surface markers and cytokines of dendritic cells harvested from cord blood
    • Young SL, Simon MA, Baird MA, Tannock GW, Bibiloni R, Spencely K, et al. Bifidobacterial species differentially affect expression of cell surface markers and cytokines of dendritic cells harvested from cord blood. Clin Diagn Lab Immunol. 2004;11:686-90.
    • (2004) Clin Diagn Lab Immunol , vol.11 , pp. 686-690
    • Young, S.L.1    Simon, M.A.2    Baird, M.A.3    Tannock, G.W.4    Bibiloni, R.5    Spencely, K.6
  • 26
    • 80052983050 scopus 로고    scopus 로고
    • The role of components of Bifidobacterium and Lactobacillus in pathogenesis and serologic diagnosis of autoimmune thyroid diseases
    • Kiseleva EP, Mikhailopulo KI, Sviridov O, Novik GI, Knirel YA, Szwajcer DE. The role of components of Bifidobacterium and Lactobacillus in pathogenesis and serologic diagnosis of autoimmune thyroid diseases. Benef Microbes. 2011;2:139-54.
    • (2011) Benef Microbes , vol.2 , pp. 139-154
    • Kiseleva, E.P.1    Mikhailopulo, K.I.2    Sviridov, O.3    Novik, G.I.4    Knirel, Y.A.5    Szwajcer, D.E.6
  • 27
    • 84891588241 scopus 로고    scopus 로고
    • Isolation and structural identification of glycopolymers of Bifidobacterium bifidum BIM B-733D as putative players in pathogenesis of autoimmune thyroid diseases
    • Kiseleva EP, Mikhailopulo KI, Novik GI, Szwajcer Dey E, Zdorovenko EL, Shashkov AS, et al. Isolation and structural identification of glycopolymers of Bifidobacterium bifidum BIM B-733D as putative players in pathogenesis of autoimmune thyroid diseases. Benef Microbes. 2013;4:375-91.
    • (2013) Benef Microbes , vol.4 , pp. 375-391
    • Kiseleva, E.P.1    Mikhailopulo, K.I.2    Novik, G.I.3    Szwajcer Dey, E.4    Zdorovenko, E.L.5    Shashkov, A.S.6
  • 28
    • 84920951756 scopus 로고    scopus 로고
    • HLA-B27 and human β2-microglobulin affect the gut microbiota of transgenic rats
    • Lin P, Bach M, Asquith M, Lee AY, Akileswaran L, Stauffer P, et al. HLA-B27 and human β2-microglobulin affect the gut microbiota of transgenic rats. PLoS One. 2014;9:e105684.
    • (2014) PLoS One , vol.9
    • Lin, P.1    Bach, M.2    Asquith, M.3    Lee, A.Y.4    Akileswaran, L.5    Stauffer, P.6
  • 29
    • 84867074831 scopus 로고    scopus 로고
    • A metagenome-wide association study of gut microbiota in type 2 diabetes
    • Qin J, Li Y, Cai Z, Li S, Zhu J, Zhang F, et al. A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature. 2012;490:55-60.
    • (2012) Nature , vol.490 , pp. 55-60
    • Qin, J.1    Li, Y.2    Cai, Z.3    Li, S.4    Zhu, J.5    Zhang, F.6
  • 31
    • 84949772416 scopus 로고    scopus 로고
    • Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota
    • Forslund K, Hildebrand F, Nielsen T, Falony G, Le Chatelier E, Sunagawa S, et al. Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. Nature. 2015;528:262-6.
    • (2015) Nature , vol.528 , pp. 262-266
    • Forslund, K.1    Hildebrand, F.2    Nielsen, T.3    Falony, G.4    Chatelier, E.5    Sunagawa, S.6
  • 32
    • 84905730761 scopus 로고    scopus 로고
    • Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
    • Nielsen HB, Almeida M, Juncker AS, Rasmussen S, Li J, Sunagawa S, et al. Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes. Nat Biotechnol. 2014;32:822-8.
    • (2014) Nat Biotechnol , vol.32 , pp. 822-828
    • Nielsen, H.B.1    Almeida, M.2    Juncker, A.S.3    Rasmussen, S.4    Li, J.5    Sunagawa, S.6
  • 33
    • 84921367265 scopus 로고    scopus 로고
    • Modulation of immune development and function by intestinal microbiota
    • Kabat AM, Srinivasan N, Maloy KJ. Modulation of immune development and function by intestinal microbiota. Trends Immunol. 2014;35:507-17.
    • (2014) Trends Immunol , vol.35 , pp. 507-517
    • Kabat, A.M.1    Srinivasan, N.2    Maloy, K.J.3
  • 34
    • 84855883853 scopus 로고    scopus 로고
    • Proteasomes and protein conjugation across domains of life
    • Maupin-Furlow J. Proteasomes and protein conjugation across domains of life. Nat Rev Microbiol. 2012;10:100-11.
    • (2012) Nat Rev Microbiol , vol.10 , pp. 100-111
    • Maupin-Furlow, J.1
  • 35
    • 70349386176 scopus 로고    scopus 로고
    • Ankylosing spondylitis monocytes show upregulation of proteins involved in inflammation and the ubiquitin proteasome pathway
    • Wright C, Edelmann M, diGleria K, Kollnberger S, Kramer H, McGowan S, et al. Ankylosing spondylitis monocytes show upregulation of proteins involved in inflammation and the ubiquitin proteasome pathway. Ann Rheum Dis. 2009;68:1626-32.
    • (2009) Ann Rheum Dis , vol.68 , pp. 1626-1632
    • Wright, C.1    Edelmann, M.2    diGleria, K.3    Kollnberger, S.4    Kramer, H.5    McGowan, S.6
  • 36
    • 0034284803 scopus 로고    scopus 로고
    • Prokaryotic regulation of epithelial responses by inhibition of IkappaB-alpha ubiquitination
    • Neish AS, Gewirtz AT, Zeng H, Young AN, Hobert ME, Karmali V, et al. Prokaryotic regulation of epithelial responses by inhibition of IkappaB-alpha ubiquitination. Science. 2000;289:1560-3.
    • (2000) Science , vol.289 , pp. 1560-1563
    • Neish, A.S.1    Gewirtz, A.T.2    Zeng, H.3    Young, A.N.4    Hobert, M.E.5    Karmali, V.6
  • 37
    • 0036790834 scopus 로고    scopus 로고
    • Circulating proteasomes are markers of cell damage and immunologic activity in autoimmune diseases
    • Egerer K, Kuckelkorn U, Rudolph PE, Ruckert JC, Dorner T, Burmester GR, et al. Circulating proteasomes are markers of cell damage and immunologic activity in autoimmune diseases. J Rheumatol. 2002;29:2045-52.
    • (2002) J Rheumatol , vol.29 , pp. 2045-2052
    • Egerer, K.1    Kuckelkorn, U.2    Rudolph, P.E.3    Ruckert, J.C.4    Dorner, T.5    Burmester, G.R.6
  • 38
    • 0021272107 scopus 로고
    • Evaluation of diagnostic criteria for ankylosing spondylitis. A proposal for modification of the New York criteria
    • van der Linden S, Valkenburg HA, Cats A. Evaluation of diagnostic criteria for ankylosing spondylitis. A proposal for modification of the New York criteria. Arthritis Rheum. 1984;27:361-8.
    • (1984) Arthritis Rheum , vol.27 , pp. 361-368
    • Linden, S.1    Valkenburg, H.A.2    Cats, A.3
  • 39
    • 0028300233 scopus 로고
    • Can we define the outcome of ankylosing spondylitis and the effect of physiotherapy management?
    • Calin A. Can we define the outcome of ankylosing spondylitis and the effect of physiotherapy management? J Rheumatol. 1994;21:184-5.
    • (1994) J Rheumatol , vol.21 , pp. 184-185
    • Calin, A.1
  • 40
    • 0028575453 scopus 로고
    • A new approach to defining disease status in ankylosing spondylitis: the Bath Ankylosing Spondylitis Disease Activity Index
    • Garrett S, Jenkinson T, Kennedy LG, Whitelock H, Gaisford P, Calin A. A new approach to defining disease status in ankylosing spondylitis: the Bath Ankylosing Spondylitis Disease Activity Index. J Rheumatol. 1994;21:2286-91.
    • (1994) J Rheumatol , vol.21 , pp. 2286-2291
    • Garrett, S.1    Jenkinson, T.2    Kennedy, L.G.3    Whitelock, H.4    Gaisford, P.5    Calin, A.6
  • 41
    • 40049104732 scopus 로고    scopus 로고
    • SOAP: short oligonucleotide alignment program
    • Li R, Li Y, Kristiansen K, Wang J. SOAP: short oligonucleotide alignment program. Bioinformatics. 2008;24:713-4.
    • (2008) Bioinformatics , vol.24 , pp. 713-714
    • Li, R.1    Li, Y.2    Kristiansen, K.3    Wang, J.4
  • 42
    • 84942887758 scopus 로고    scopus 로고
    • SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
    • Luo R, Liu B, Xie Y, Li Z, Huang W, Yuan J, et al. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. GigaScience. 2012;1:1-6.
    • (2012) GigaScience , vol.1 , pp. 1-6
    • Luo, R.1    Liu, B.2    Xie, Y.3    Li, Z.4    Huang, W.5    Yuan, J.6
  • 43
    • 77955902981 scopus 로고    scopus 로고
    • Ab initio gene identification in metagenomic sequences
    • Zhu W, Lomsadze A, Borodovsky M. Ab initio gene identification in metagenomic sequences. Nucleic Acids Res. 2010;38:e132.
    • (2010) Nucleic Acids Res , vol.38
    • Zhu, W.1    Lomsadze, A.2    Borodovsky, M.3
  • 44
    • 84870431038 scopus 로고    scopus 로고
    • CD-HIT: accelerated for clustering the next-generation sequencing data
    • Fu L, Niu B, Zhu Z, Wu S, Li W. CD-HIT: accelerated for clustering the next-generation sequencing data. Bioinformatics. 2012;28:3150-2.
    • (2012) Bioinformatics , vol.28 , pp. 3150-3152
    • Fu, L.1    Niu, B.2    Zhu, Z.3    Wu, S.4    Li, W.5
  • 45
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey JD, Tibshirani R. Statistical significance for genomewide studies. Proc Natl Acad Sci. 2003;100:9440-5.
    • (2003) Proc Natl Acad Sci , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 46
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-the BLAST-like alignment tool
    • Kent WJ. BLAT-the BLAST-like alignment tool. Genome Res. 2002;12:656-64.
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 47
    • 0032573709 scopus 로고    scopus 로고
    • Synergistic algorithm for estimating vegetation canopy leaf area index and fraction of absorbed photosynthetically active radiation from MODIS and MISR data
    • Knyazikhin Y, Martonchik J, Myneni R, Diner D, Running S. Synergistic algorithm for estimating vegetation canopy leaf area index and fraction of absorbed photosynthetically active radiation from MODIS and MISR data. J Geophys Res. 1998;103:32257-75.
    • (1998) J Geophys Res , vol.103 , pp. 32257-32275
    • Knyazikhin, Y.1    Martonchik, J.2    Myneni, R.3    Diner, D.4    Running, S.5


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