-
1
-
-
77954407332
-
Genomewide association studies and assessment of the risk of disease
-
Manolio, T. A. Genomewide Association Studies and Assessment of the Risk of Disease. New England Journal of Medicine 363, 166-176 (2010).
-
(2010)
New England Journal of Medicine
, vol.363
, pp. 166-176
-
-
Manolio, T.A.1
-
2
-
-
84924545632
-
Rare and common genetic events in type 2 diabetes: What should biologists know?
-
Bonnefond, A., Froguel, P. Rare and Common Genetic Events in Type 2 Diabetes: What Should Biologists Know? Cell Metabolism 21, 357-368 (2015).
-
(2015)
Cell Metabolism
, vol.21
, pp. 357-368
-
-
Bonnefond, A.1
Froguel, P.2
-
3
-
-
77953808087
-
Genotype imputation for genome-wide association studies
-
Marchini, J., Howie, B. Genotype imputation for genome-wide association studies. Nature Reviews Genetics 11, 499-511 (2010).
-
(2010)
Nature Reviews Genetics
, vol.11
, pp. 499-511
-
-
Marchini, J.1
Howie, B.2
-
4
-
-
84943171338
-
A global reference for human genetic variation
-
Altshuler, D. M. et al. A global reference for human genetic variation. Nature 526, 68-74 (2015).
-
(2015)
Nature
, vol.526
, pp. 68-74
-
-
Altshuler, D.M.1
-
5
-
-
84956612031
-
Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes
-
Imamura, M. et al. Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes. Nat. Commun. 7, 10531, doi: 10.1038/ncomms10531 (2016).
-
(2016)
Nat. Commun.
, vol.7
, pp. 10531
-
-
Imamura, M.1
-
6
-
-
84945346364
-
Genome-wide association analyses based on whole-genome sequencing in Sardinia provide insights into regulation of hemoglobin levels
-
Danjou, F. et al. Genome-wide association analyses based on whole-genome sequencing in Sardinia provide insights into regulation of hemoglobin levels. Nat. Genet. 47, 1264-1271 (2015).
-
(2015)
Nat. Genet.
, vol.47
, pp. 1264-1271
-
-
Danjou, F.1
-
7
-
-
84906226932
-
A common Greenlandic TBC1D4 variant confers muscle insulin resistance and type 2 diabetes
-
Moltke, I. et al. A common Greenlandic TBC1D4 variant confers muscle insulin resistance and type 2 diabetes. Nature 512, 190-193 (2014).
-
(2014)
Nature
, vol.512
, pp. 190-193
-
-
Moltke, I.1
-
8
-
-
84939857070
-
Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals
-
Nagasaki, M. et al. Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals. Nat. Commun. 6, 8018, doi: 10.1038/ncomms9018 (2015).
-
(2015)
Nat. Commun.
, vol.6
, pp. 8018
-
-
Nagasaki, M.1
-
9
-
-
84908551473
-
Improved imputation quality of low-frequency and rare variants in European samples using the 'Genome of the Netherlands'
-
Deelen, P. et al. Improved imputation quality of low-frequency and rare variants in European samples using the 'Genome of The Netherlands'. European Journal of Hum. Genet. 22, 1321-1326 (2014).
-
(2014)
European Journal of Hum. Genet.
, vol.22
, pp. 1321-1326
-
-
Deelen, P.1
-
10
-
-
84983479616
-
A reference panel of 64,976 haplotypes for genotype imputation
-
McCarthy, S. et al. A reference panel of 64,976 haplotypes for genotype imputation. Nat. Genet. 48, 1279-1283 (2016).
-
(2016)
Nat. Genet.
, vol.48
, pp. 1279-1283
-
-
McCarthy, S.1
-
11
-
-
84957837279
-
Genomic reconstruction of the history of extant populations of India reveals five distinct ancestral components and a complex structure
-
Basu, A., Sarkar-Roy, N., Majumder, P. P. Genomic reconstruction of the history of extant populations of India reveals five distinct ancestral components and a complex structure. Proceedings of the National Academy of Sciences of the United States of America 113, 1594-1599 (2016).
-
(2016)
Proceedings of the National Academy of Sciences of the United States of America
, vol.113
, pp. 1594-1599
-
-
Basu, A.1
Sarkar-Roy, N.2
Majumder, P.P.3
-
12
-
-
76749160643
-
The human genetic history of South Asia
-
Majumder, P. P. The Human Genetic History of South Asia. Curr. Biol. 20, R184-R187 (2010).
-
(2010)
Curr. Biol.
, vol.20
, pp. R184-R187
-
-
Majumder, P.P.1
-
13
-
-
70349472875
-
Reconstructing Indian population history
-
Reich, D., Thangaraj, K., Patterson, N., Price, A. L., Singh, L. Reconstructing Indian population history. Nature 461, 489-494 (2009).
-
(2009)
Nature
, vol.461
, pp. 489-494
-
-
Reich, D.1
Thangaraj, K.2
Patterson, N.3
Price, A.L.4
Singh, L.5
-
14
-
-
28044436937
-
The Indian Genome Variation database (IGVdb): A project overview
-
Indian Genome Variation Consortium
-
Indian Genome Variation Consortium. The Indian Genome Variation database (IGVdb): A project overview. Hum. Genet. 118, 1-11 (2005).
-
(2005)
Hum. Genet.
, vol.118
, pp. 1-11
-
-
-
15
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
Altshuler, D. et al. A map of human genome variation from population-scale sequencing. Nature 467, 1061-1073 (2010).
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
Altshuler, D.1
-
16
-
-
67651222400
-
A flexible and accurate genotype imputation method for the next generation of genome-wide association studies
-
Howie, B. N., Donnelly, P., Marchini, J. A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies. Plos Genetics 5, e1000529, doi: 10.1371/journal.pgen.1000529 (2009).
-
(2009)
Plos Genetics
, vol.5
, pp. e1000529
-
-
Howie, B.N.1
Donnelly, P.2
Marchini, J.3
-
17
-
-
84863845193
-
Genotype imputation with thousands of genomes
-
Howie, B., Marchini, J., Stephens, M. Genotype Imputation with Thousands of Genomes. G3-Genes Genom. Genet. 1, 457-469 (2011).
-
(2011)
G3-Genes Genom. Genet.
, vol.1
, pp. 457-469
-
-
Howie, B.1
Marchini, J.2
Stephens, M.3
-
18
-
-
66949164844
-
Modeling microbial survival in buildup biofilm for complex medical devices
-
Alfa, M. J., Howie, R. Modeling microbial survival in buildup biofilm for complex medical devices. BMC Infectious Diseases 9, 56, doi: 10.1186/1471-2334-9-56 (2009).
-
(2009)
BMC Infectious Diseases
, vol.9
, pp. 56
-
-
Alfa, M.J.1
Howie, R.2
-
19
-
-
0035070666
-
Intake of micronutrient-rich foods in rural Indian mothers is associated with the size of their babies at birth: Pune maternal nutrition study
-
Rao, S. et al. Intake of micronutrient-rich foods in rural Indian mothers is associated with the size of their babies at birth: Pune maternal nutrition study. Journal of Nutrition 131, 1217-1224 (2001).
-
(2001)
Journal of Nutrition
, vol.131
, pp. 1217-1224
-
-
Rao, S.1
-
20
-
-
84941702459
-
Improved imputation of low-frequency and rare variants using the UK10K haplotype reference panel
-
Huang, J. et al. Improved imputation of low-frequency and rare variants using the UK10K haplotype reference panel. Nat. Commun. 6, 8111, doi: 10.1038/ncomms9111 (2015).
-
(2015)
Nat. Commun.
, vol.6
, pp. 8111
-
-
Huang, J.1
-
21
-
-
84940521469
-
Population-specific genotype imputations using minimac or IMPUTE2
-
van Leeuwen, E. M. et al. Population-specific genotype imputations using minimac or IMPUTE2. Nature Protocols 10, 1285-1296 (2015).
-
(2015)
Nature Protocols
, vol.10
, pp. 1285-1296
-
-
Van Leeuwen, E.M.1
-
22
-
-
84960425818
-
Evaluation of transethnic fine mapping with population-specific and cosmopolitan imputation reference panels in diverse Asian populations
-
Wang, X. et al. Evaluation of transethnic fine mapping with population-specific and cosmopolitan imputation reference panels in diverse Asian populations. European Journal of Human Genetics 24, 592-599 (2015).
-
(2015)
European Journal of Human Genetics
, vol.24
, pp. 592-599
-
-
Wang, X.1
-
23
-
-
84949008439
-
When does choice of accuracy measure alter imputation accuracy assessments
-
Ramnarine, S. et al. When Does Choice of Accuracy Measure Alter Imputation Accuracy Assessments? Plos One 10, doi: 10.1371/journal.pone.0137601 (2015).
-
(2015)
Plos One
, vol.10
-
-
Ramnarine, S.1
-
24
-
-
84973587732
-
A coefficient of agreement for nominal scales
-
Cohen, J. A Coefficient of Agreement for Nominal Scales. Educational and Psychological Measurement 20, 37-46 (1960).
-
(1960)
Educational and Psychological Measurement
, vol.20
, pp. 37-46
-
-
Cohen, J.1
-
25
-
-
79960405019
-
The variant call format and VCFtools
-
Danecek, P. et al. The variant call format and VCFtools. Bioinformatics 27, 2156-2158 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 2156-2158
-
-
Danecek, P.1
-
26
-
-
39749181521
-
Worldwide human relationships inferred from genome-wide patterns of variation
-
Li, J. Z. et al. Worldwide human relationships inferred from genome-wide patterns of variation. Science 319, 1100-1104 (2008).
-
(2008)
Science
, vol.319
, pp. 1100-1104
-
-
Li, J.Z.1
-
27
-
-
84889064165
-
A genome-wide association study reveals ARL15, a Novel Non-HLA Susceptibility gene for rheumatoid arthritis in North Indians
-
Negi, S. et al. A Genome-Wide Association Study Reveals ARL15, a Novel Non-HLA Susceptibility Gene for Rheumatoid Arthritis in North Indians. Arthritis and Rheumatism 65, 3026-3035 (2013).
-
(2013)
Arthritis and Rheumatism
, vol.65
, pp. 3026-3035
-
-
Negi, S.1
-
28
-
-
84870616969
-
Assessment of genotype imputation performance using 1000 genomes in African American Studies
-
Hancock, D. B. et al. Assessment of Genotype Imputation Performance Using 1000 Genomes in African American Studies. Plos One 7, doi: 10.1371/journal.pone.0050610 (2012).
-
(2012)
Plos One
, vol.7
-
-
Hancock, D.B.1
-
29
-
-
84933278837
-
Construction of a population-specific HLA imputation reference panel and its application to Graves' disease risk in Japanese
-
Okada, Y. et al. Construction of a population-specific HLA imputation reference panel and its application to Graves' disease risk in Japanese. Nat. Genet. 47, 798-802 (2015).
-
(2015)
Nat. Genet.
, vol.47
, pp. 798-802
-
-
Okada, Y.1
-
30
-
-
77949837410
-
Practical considerations for imputation of untyped markers in admixed populations
-
Shriner, D., Adeyemo, A., Chen, G. J., Rotimi, C. N. Practical Considerations for Imputation of Untyped Markers in Admixed Populations. Genet. Epidemiol. 34, 258-265 (2010).
-
(2010)
Genet. Epidemiol.
, vol.34
, pp. 258-265
-
-
Shriner, D.1
Adeyemo, A.2
Chen, G.J.3
Rotimi, C.N.4
-
31
-
-
83455188178
-
Shared and unique components of human population structure and genome-wide signals of positive selection in South Asia
-
Metspalu, M. et al. Shared and Unique Components of Human Population Structure and Genome-Wide Signals of Positive Selection in South Asia. American Journal of Human Genetics 89, 731-744 (2011).
-
(2011)
American Journal of Human Genetics
, vol.89
, pp. 731-744
-
-
Metspalu, M.1
-
32
-
-
44149107150
-
Genetic landscape of the people of India: A canvas for disease gene exploration
-
Indian Genome Variation C.
-
Indian Genome Variation, C. Genetic landscape of the people of India: A canvas for disease gene exploration. Journal of Genetics 87, 3-20 (2008).
-
(2008)
Journal of Genetics
, vol.87
, pp. 3-20
-
-
-
33
-
-
33845936147
-
Common variants in the TCF7L2 gene are strongly associated with type 2 diabetes mellitus in the Indian population
-
Chandak, G. R. et al. Common variants in the TCF7L2 gene are strongly associated with type 2 diabetes mellitus in the Indian population. Diabetologia 50, 63-67 (2007).
-
(2007)
Diabetologia
, vol.50
, pp. 63-67
-
-
Chandak, G.R.1
-
34
-
-
0037147189
-
Genetic structure of human populations
-
Rosenberg, N. A. et al. Genetic structure of human populations. Science 298, 2381-2385 (2002).
-
(2002)
Science
, vol.298
, pp. 2381-2385
-
-
Rosenberg, N.A.1
-
35
-
-
34548292504
-
PLINK: A tool set for whole-genome association and population-based linkage analyses
-
Purcell, S. et al. PLINK: A tool set for whole-genome association and population-based linkage analyses. American Journal of Human Genetics 81, 559-575 (2007).
-
(2007)
American Journal of Human Genetics
, vol.81
, pp. 559-575
-
-
Purcell, S.1
-
36
-
-
78149417737
-
A new statistic to evaluate imputation reliability
-
Lin, P. et al. A New Statistic to Evaluate Imputation Reliability. Plos One 5, doi: 10.1371/journal.pone.0009697 (2010).
-
(2010)
Plos One
, vol.5
-
-
Lin, P.1
|