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Volumn 24, Issue 4, 2016, Pages 592-599

Evaluation of transethnic fine mapping with population-specific and cosmopolitan imputation reference panels in diverse Asian populations

Author keywords

[No Author keywords available]

Indexed keywords

HIGH DENSITY LIPOPROTEIN CHOLESTEROL; LOW DENSITY LIPOPROTEIN CHOLESTEROL; TRIACYLGLYCEROL;

EID: 84960425818     PISSN: 10184813     EISSN: 14765438     Source Type: Journal    
DOI: 10.1038/ejhg.2015.150     Document Type: Article
Times cited : (3)

References (46)
  • 1
    • 42349112088 scopus 로고    scopus 로고
    • Genome-wide association studies for complex traits: Consensus, uncertainty and challenges
    • McCarthy MI, Abecasis GR, Cardon LR et al: Genome-wide association studies for complex traits: consensus, uncertainty and challenges. Nat Rev Genet 2008; 9: 356-369
    • (2008) Nat Rev Genet , vol.9 , pp. 356-369
    • McCarthy, M.I.1    Abecasis, G.R.2    Cardon, L.R.3
  • 2
    • 70349956433 scopus 로고    scopus 로고
    • Finding the missing heritability of complex diseases
    • Manolio TA, Collins FS, Cox NJ et al: Finding the missing heritability of complex diseases. Nature 2009; 461: 747-753
    • (2009) Nature , vol.461 , pp. 747-753
    • Manolio, T.A.1    Collins, F.S.2    Cox, N.J.3
  • 3
    • 84975795680 scopus 로고    scopus 로고
    • An integrated map of genetic variation from 1, 092 human genomes
    • Abecasis GR, Auton A, Brooks LD et al: An integrated map of genetic variation from 1, 092 human genomes. Nature 2012; 491: 56-65
    • (2012) Nature , vol.491 , pp. 56-65
    • Abecasis, G.R.1    Auton, A.2    Brooks, L.D.3
  • 4
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • Durbin RM, Abecasis GR, Altshuler DL et al: A map of human genome variation from population-scale sequencing. Nature 2010; 467: 1061-1073
    • (2010) Nature , vol.467 , pp. 1061-1073
    • Durbin, R.M.1    Abecasis, G.R.2    Altshuler, D.L.3
  • 5
    • 67349278465 scopus 로고    scopus 로고
    • Genome-wide and fine-resolution association analysis of malaria in West Africa
    • Jallow M, Teo YY, Small KS et al: Genome-wide and fine-resolution association analysis of malaria in West Africa. Nat Genet 2009; 41: 657-665
    • (2009) Nat Genet , vol.41 , pp. 657-665
    • Jallow, M.1    Teo, Y.Y.2    Small, K.S.3
  • 6
    • 75649149885 scopus 로고    scopus 로고
    • Methodological challenges of genome-wide association analysis in Africa
    • Teo YY, Small KS, Kwiatkowski DP: Methodological challenges of genome-wide association analysis in Africa. Nat Rev Genet 2010; 11: 149-160
    • (2010) Nat Rev Genet , vol.11 , pp. 149-160
    • Teo, Y.Y.1    Small, K.S.2    Kwiatkowski, D.P.3
  • 8
    • 84869232820 scopus 로고    scopus 로고
    • Efficiency of trans-ethnic genome-wide metaanalysis and fine-mapping
    • Twee-Hee Ong R, Wang X, Liu X, Teo YY: Efficiency of trans-ethnic genome-wide metaanalysis and fine-mapping. Eur J Hum Genet 2012; 20: 1300-1307
    • (2012) Eur J Hum Genet , vol.20 , pp. 1300-1307
    • Twee-Hee Ong, R.1    Wang, X.2    Liu, X.3    Teo, Y.Y.4
  • 9
    • 77958604488 scopus 로고    scopus 로고
    • Identifying candidate causal variants via transpopulation fine-mapping
    • Teo YY, Ong RT, Sim X, Tai ES, Chia KS: Identifying candidate causal variants via transpopulation fine-mapping. Genet Epidemiol 2010; 34: 653-664
    • (2010) Genet Epidemiol , vol.34 , pp. 653-664
    • Teo, Y.Y.1    Ong, R.T.2    Sim, X.3    Tai, E.S.4    Chia, K.S.5
  • 10
    • 82355170584 scopus 로고    scopus 로고
    • Transethnic meta-Analysis of genomewide association studies
    • Morris AP: Transethnic meta-Analysis of genomewide association studies. Genet Epidemiol 2011; 35: 809-822
    • (2011) Genet Epidemiol , vol.35 , pp. 809-822
    • Morris, A.P.1
  • 11
    • 84895868553 scopus 로고    scopus 로고
    • Genome-wide trans-Ancestry meta-Analysis provides insight into the genetic architecture of type 2 diabetes susceptibility
    • Mahajan A, Go MJ, Zhang W et al: Genome-wide trans-Ancestry meta-Analysis provides insight into the genetic architecture of type 2 diabetes susceptibility. Nat Genet 2014; 46: 234-244
    • (2014) Nat Genet , vol.46 , pp. 234-244
    • Mahajan, A.1    Go, M.J.2    Zhang, W.3
  • 13
    • 77953808087 scopus 로고    scopus 로고
    • Genotype imputation for genome-wide association studies
    • Marchini J, Howie B: Genotype imputation for genome-wide association studies. Nat Rev Genet 2010; 11: 499-511
    • (2010) Nat Rev Genet , vol.11 , pp. 499-511
    • Marchini, J.1    Howie, B.2
  • 14
    • 67651222400 scopus 로고    scopus 로고
    • A flexible and accurate genotype imputation method for the next generation of genome-wide association studies
    • Howie BN, Donnelly P, Marchini J: A flexible and accurate genotype imputation method for the next generation of genome-wide association studies. PLoS Genet 2009; 5: e1000529
    • (2009) PLoS Genet , vol.5 , pp. e1000529
    • Howie, B.N.1    Donnelly, P.2    Marchini, J.3
  • 15
    • 34347344976 scopus 로고    scopus 로고
    • A new multipoint method for genome-wide association studies by imputation of genotypes
    • Marchini J, Howie B, Myers S, McVean G, Donnelly P: A new multipoint method for genome-wide association studies by imputation of genotypes. Nat Genet 2007; 39: 906-913
    • (2007) Nat Genet , vol.39 , pp. 906-913
    • Marchini, J.1    Howie, B.2    Myers, S.3    McVean, G.4    Donnelly, P.5
  • 16
    • 84872333179 scopus 로고    scopus 로고
    • Deep whole-genome sequencing of 100 southeast Asian Malays
    • Wong LP, Ong RT, Poh WT et al: Deep whole-genome sequencing of 100 southeast Asian Malays. Am J Hum Genet 2013; 92: 52-66
    • (2013) Am J Hum Genet , vol.92 , pp. 52-66
    • Wong, L.P.1    Ong, R.T.2    Poh, W.T.3
  • 17
    • 84901640306 scopus 로고    scopus 로고
    • Insights into the genetic structure and diversity of 38 South Asian Indians from deep whole-genome sequencing
    • Wong LP, Lai JK, Saw WY et al: Insights into the genetic structure and diversity of 38 South Asian Indians from deep whole-genome sequencing. PLoS Genet 2014; 10: e1004377
    • (2014) PLoS Genet , vol.10 , pp. e1004377
    • Wong, L.P.1    Lai, J.K.2    Saw, W.Y.3
  • 20
    • 84855281926 scopus 로고    scopus 로고
    • Genome-wide meta-Analysis of five Asian cohorts identifies PDGFRA as a susceptibility locus for corneal astigmatism
    • Fan Q, Zhou X, Khor CC et al: Genome-wide meta-Analysis of five Asian cohorts identifies PDGFRA as a susceptibility locus for corneal astigmatism. PLoS Genet 2011; 7: e1002402
    • (2011) PLoS Genet , vol.7 , pp. e1002402
    • Fan, Q.1    Zhou, X.2    Khor, C.C.3
  • 21
    • 79954561198 scopus 로고    scopus 로고
    • Genome-wide association studies in Asians confirm the involvement of ATOH7 and TGFBR3, and further identify CARD10 as a novel locus influencing optic disc area
    • Khor CC, Ramdas WD, Vithana EN et al: Genome-wide association studies in Asians confirm the involvement of ATOH7 and TGFBR3, and further identify CARD10 as a novel locus influencing optic disc area. Hum Mol Genet 2011; 20: 1864-1872
    • (2011) Hum Mol Genet , vol.20 , pp. 1864-1872
    • Khor, C.C.1    Ramdas, W.D.2    Vithana, E.N.3
  • 22
    • 77954164213 scopus 로고    scopus 로고
    • A genome-wide association study of optic disc parameters
    • Ramdas WD, van Koolwijk LM, Ikram MK et al: A genome-wide association study of optic disc parameters. PLoS Genet 2010; 6: e1000978
    • (2010) PLoS Genet , vol.6 , pp. e1000978
    • Ramdas, W.D.1    Van Koolwijk, L.M.2    Ikram, M.K.3
  • 23
    • 84873565360 scopus 로고    scopus 로고
    • A genome-wide association study for corneal curvature identifies the platelet-derived growth factor receptor alpha gene as a quantitative trait locus for eye size in white Europeans
    • Guggenheim JA, McMahon G, Kemp JP et al: A genome-wide association study for corneal curvature identifies the platelet-derived growth factor receptor alpha gene as a quantitative trait locus for eye size in white Europeans. Mol Vis 2013; 19: 243-253
    • (2013) Mol Vis , vol.19 , pp. 243-253
    • Guggenheim, J.A.1    McMahon, G.2    Kemp, J.P.3
  • 24
    • 84871901608 scopus 로고    scopus 로고
    • Genetic variants near PDGFRA are associated with corneal curvature in Australians
    • Mishra A, Yazar S, Hewitt AW et al: Genetic variants near PDGFRA are associated with corneal curvature in Australians. Invest Ophthalmol Vis Sci 2012; 53: 7131-7136
    • (2012) Invest Ophthalmol Vis Sci , vol.53 , pp. 7131-7136
    • Mishra, A.1    Yazar, S.2    Hewitt, A.W.3
  • 25
    • 80052242121 scopus 로고    scopus 로고
    • Association of variants in FRAP1 and PDGFRA with corneal curvature in Asian populations from Singapore
    • Han S, Chen P, Fan Q et al: Association of variants in FRAP1 and PDGFRA with corneal curvature in Asian populations from Singapore. Hum Mol Genet 2011; 20: 3693-3698
    • (2011) Hum Mol Genet , vol.20 , pp. 3693-3698
    • Han, S.1    Chen, P.2    Fan, Q.3
  • 26
    • 38649132270 scopus 로고    scopus 로고
    • Six new loci associated with blood lowdensity lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans
    • Kathiresan S, Melander O, Guiducci C et al: Six new loci associated with blood lowdensity lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans. Nat Genet 2008; 40: 189-197
    • (2008) Nat Genet , vol.40 , pp. 189-197
    • Kathiresan, S.1    Melander, O.2    Guiducci, C.3
  • 27
    • 38649125868 scopus 로고    scopus 로고
    • Newly identified loci that influence lipid concentrations and risk of coronary artery disease
    • Willer CJ, Sanna S, Jackson AU et al: Newly identified loci that influence lipid concentrations and risk of coronary artery disease. Nat Genet 2008; 40: 161-169
    • (2008) Nat Genet , vol.40 , pp. 161-169
    • Willer, C.J.1    Sanna, S.2    Jackson, A.U.3
  • 28
    • 58149161560 scopus 로고    scopus 로고
    • Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts
    • Aulchenko YS, Ripatti S, Lindqvist I et al: Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts. Nat Genet 2009; 41: 47-55
    • (2009) Nat Genet , vol.41 , pp. 47-55
    • Aulchenko, Y.S.1    Ripatti, S.2    Lindqvist, I.3
  • 29
    • 58149163149 scopus 로고    scopus 로고
    • Common variants at 30 loci contribute to polygenic dyslipidemia
    • Kathiresan S, Willer CJ, Peloso GM et al: Common variants at 30 loci contribute to polygenic dyslipidemia. Nat Genet 2009; 41: 56-65
    • (2009) Nat Genet , vol.41 , pp. 56-65
    • Kathiresan, S.1    Willer, C.J.2    Peloso, G.M.3
  • 30
    • 77955505564 scopus 로고    scopus 로고
    • Biological, clinical and population relevance of 95 loci for blood lipids
    • Teslovich TM, Musunuru K, Smith AV et al: Biological, clinical and population relevance of 95 loci for blood lipids. Nature 2010; 466: 707-713
    • (2010) Nature , vol.466 , pp. 707-713
    • Teslovich, T.M.1    Musunuru, K.2    Smith, A.V.3
  • 31
    • 67149095078 scopus 로고    scopus 로고
    • Designing genome-wide association studies: Sample size, power, imputation, and the choice of genotyping chip
    • Spencer CC, Su Z, Donnelly P, Marchini J: Designing genome-wide association studies: sample size, power, imputation, and the choice of genotyping chip. PLoS Genet 2009; 5: e1000477
    • (2009) PLoS Genet , vol.5 , pp. e1000477
    • Spencer, C.C.1    Su, Z.2    Donnelly, P.3    Marchini, J.4
  • 32
    • 35348983887 scopus 로고    scopus 로고
    • A second generation human haplotype map of over 3.1 million SNPs
    • Frazer KA, Ballinger DG, Cox DR et al: A second generation human haplotype map of over 3.1 million SNPs. Nature 2007; 449: 851-861
    • (2007) Nature , vol.449 , pp. 851-861
    • Frazer, K.A.1    Ballinger, D.G.2    Cox, D.R.3
  • 33
    • 84655162045 scopus 로고    scopus 로고
    • Meta-Analysis of genome-wide association studies identifies eight new loci for type 2 diabetes in east Asians
    • Cho YS, Chen CH, Hu C et al: Meta-Analysis of genome-wide association studies identifies eight new loci for type 2 diabetes in east Asians. Nat Genet 2012; 44: 67-72
    • (2012) Nat Genet , vol.44 , pp. 67-72
    • Cho, Y.S.1    Ch, C.2    Hu, C.3
  • 34
    • 79955638028 scopus 로고    scopus 로고
    • Transferability of type 2 diabetes implicated loci in multiethnic cohorts from Southeast Asia
    • Sim X, Ong RT, Suo C et al: Transferability of type 2 diabetes implicated loci in multiethnic cohorts from Southeast Asia. PLoS Genet 2011; 7: e1001363
    • (2011) PLoS Genet , vol.7 , pp. e1001363
    • Sim, X.1    Ong, R.T.2    Suo, C.3
  • 35
    • 58149345887 scopus 로고    scopus 로고
    • Practical aspects of imputation-driven meta-Analysis of genome-wide association studies
    • De Bakker PI, Ferreira MA, Jia X, Neale BM, Raychaudhuri S, Voight BF: Practical aspects of imputation-driven meta-Analysis of genome-wide association studies. Hum Mol Genet 2008; 17: R122-R128
    • (2008) Hum Mol Genet , vol.17 , pp. R122-R128
    • De Bakker, P.I.1    Ma, F.2    Jia, X.3    Neale, B.M.4    Raychaudhuri, S.5    Voight, B.F.6
  • 36
    • 42349106044 scopus 로고    scopus 로고
    • Meta-Analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes
    • Zeggini E, Scott LJ, Saxena R et al: Meta-Analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes. Nat Genet 2008; 40: 638-645
    • (2008) Nat Genet , vol.40 , pp. 638-645
    • Zeggini, E.1    Scott, L.J.2    Saxena, R.3
  • 37
    • 78751693747 scopus 로고    scopus 로고
    • Collagen-related genes influence the glaucoma risk factor, central corneal thickness
    • Vithana EN, Aung T, Khor CC et al: Collagen-related genes influence the glaucoma risk factor, central corneal thickness. Hum Mol Genet 2011; 20: 649-658
    • (2011) Hum Mol Genet , vol.20 , pp. 649-658
    • Vithana, E.N.1    Aung, T.2    Khor, C.C.3
  • 38
    • 84877889897 scopus 로고    scopus 로고
    • Comparing methods for performing trans-ethnic meta-Analysis of genome-wide association studies
    • Wang X, Chua HX, Chen P et al: Comparing methods for performing trans-ethnic meta-Analysis of genome-wide association studies. Hum Mol Genet 2013; 22: 2303-2311
    • (2013) Hum Mol Genet , vol.22 , pp. 2303-2311
    • Wang, X.1    Chua, H.X.2    Chen, P.3
  • 39
    • 84867271277 scopus 로고    scopus 로고
    • Discovery and fine mapping of serum protein loci through transethnic meta-Analysis
    • Franceschini N, van Rooij FJ, Prins BP et al: Discovery and fine mapping of serum protein loci through transethnic meta-Analysis. Am J Hum Genet 2012; 91: 744-753
    • (2012) Am J Hum Genet , vol.91 , pp. 744-753
    • Franceschini, N.1    Van Rooij, F.J.2    Prins, B.P.3
  • 40
    • 84867715968 scopus 로고    scopus 로고
    • High density GWAS for LDL cholesterol in African Americans using electronic medical records reveals a strong protective variant in APOE
    • Rasmussen-Torvik LJ, Pacheco JA, Wilke RA et al: High density GWAS for LDL cholesterol in African Americans using electronic medical records reveals a strong protective variant in APOE. Clin Transl Sci 2012; 5: 394-399
    • (2012) Clin Transl Sci , vol.5 , pp. 394-399
    • Rasmussen-Torvik, L.J.1    Pacheco, J.A.2    Wilke, R.A.3
  • 41
    • 33750444621 scopus 로고    scopus 로고
    • A worldwide survey of haplotype variation and linkage disequilibrium in the human genome
    • Conrad DF, Jakobsson M, Coop G et al: A worldwide survey of haplotype variation and linkage disequilibrium in the human genome. Nat Genet 2006; 38: 1251-1260
    • (2006) Nat Genet , vol.38 , pp. 1251-1260
    • Conrad, D.F.1    Jakobsson, M.2    Coop, G.3
  • 42
    • 34848834843 scopus 로고    scopus 로고
    • Classical sickle beta-globin haplotypes exhibit a high degree of long-range haplotype similarity in African and Afro-Caribbean populations
    • Hanchard N, Elzein A, Trafford C et al: Classical sickle beta-globin haplotypes exhibit a high degree of long-range haplotype similarity in African and Afro-Caribbean populations. BMC Genet 2007; 8: 52
    • (2007) BMC Genet , vol.8 , pp. 52
    • Hanchard, N.1    Elzein, A.2    Trafford, C.3
  • 43
    • 84908551473 scopus 로고    scopus 로고
    • Improved imputation quality of lowfrequency and rare variants in European samples using the Genome of the Netherlands
    • Deelen P, Menelaou A, van Leeuwen EM et al: Improved imputation quality of lowfrequency and rare variants in European samples using the 'Genome of The Netherlands'. Eur J Hum Genet 2014; 22: 1321-1326
    • (2014) Eur J Hum Genet , vol.22 , pp. 1321-1326
    • Deelen, P.1    Menelaou, A.2    Van Leeuwen, E.M.3
  • 44
    • 84875958680 scopus 로고    scopus 로고
    • Genotype Imputation for Latinos Using the HapMap and 1000 Genomes Project Reference Panels
    • Gao X, Haritunians T, Marjoram P et al: Genotype Imputation for Latinos Using the HapMap and 1000 Genomes Project Reference Panels. Front Genet 2012; 3: 117
    • (2012) Front Genet , vol.3 , pp. 117
    • Gao, X.1    Haritunians, T.2    Marjoram, P.3
  • 45
    • 62649089065 scopus 로고    scopus 로고
    • Genotype-imputation accuracy across worldwide human populations
    • Huang L, Li Y, Singleton AB et al: Genotype-imputation accuracy across worldwide human populations. Am J Hum Genet 2009; 84: 235-250
    • (2009) Am J Hum Genet , vol.84 , pp. 235-250
    • Huang, L.1    Li, Y.2    Singleton, A.B.3
  • 46
    • 78649508578 scopus 로고    scopus 로고
    • Mach: Using sequence and genotype data to estimate haplotypes and unobserved genotypes
    • Li Y, Willer CJ, Ding J, Scheet P, Abecasis GR: MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes. Genet Epidemiol 2010; 34: 816-834
    • (2010) Genet Epidemiol , vol.34 , pp. 816-834
    • Li, Y.1    Willer, C.J.2    Ding, J.3    Scheet, P.4    Abecasis, G.R.5


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