-
1
-
-
77956331627
-
Integrating common and rare genetic variation in diverse human populations
-
International HapMap 3 Consortium. et al. Integrating common and rare genetic variation in diverse human populations. Nature 467, 52-58 (2010).
-
(2010)
Nature
, vol.467
, pp. 52-58
-
-
-
2
-
-
84975795680
-
An integrated map of genetic variation from 1,092 human genomes
-
1000 Genomes Project Consortium. et al. An integrated map of genetic variation from 1,092 human genomes. Nature 491; 56-65(2012).
-
(2012)
Nature
, vol.491
, pp. 56-65
-
-
-
3
-
-
84892798985
-
The Genome of the Netherlands: Design, and project goals
-
Boomsma, D.I. et al. The Genome of the Netherlands: design, and project goals. Eur. J. Hum. Genet. 22, 221-227 (2014).
-
(2014)
Eur. J. Hum. Genet
, vol.22
, pp. 221-227
-
-
Boomsma, D.I.1
-
4
-
-
84908551473
-
Improved imputation quality of low-frequency and rare variants in European samples using the 'Genome of the Netherlands'
-
Deelen, P. et al. Improved imputation quality of low-frequency and rare variants in European samples using the 'Genome of The Netherlands'. Eur. J. Hum. Genet. 22, 1321-1326 (2014).
-
(2014)
Eur. J. Hum. Genet
, vol.22
, pp. 1321-1326
-
-
Deelen, P.1
-
5
-
-
84905579746
-
Whole-genome sequence variation, population structure and demographic history of the Dutch population
-
Genome of the Netherlands Consortium. Whole-genome sequence variation, population structure and demographic history of the Dutch population. Nat. Genet. 46, 818-825 (2014).
-
(2014)
Nat. Genet
, vol.46
, pp. 818-825
-
-
-
6
-
-
77953808087
-
Genotype imputation for genome-wide association studies
-
Marchini, J. & Howie, B. Genotype imputation for genome-wide association studies. Nat. Rev. Genet. 11, 499-511 (2010).
-
(2010)
Nat. Rev. Genet
, vol.11
, pp. 499-511
-
-
Marchini, J.1
Howie, B.2
-
7
-
-
78651100696
-
Data quality control in genetic case-control association studies
-
Anderson, C.A. et al. Data quality control in genetic case-control association studies. Nat. Protoc. 5, 1564-1573 (2010).
-
(2010)
Nat. Protoc
, vol.5
, pp. 1564-1573
-
-
Anderson, C.A.1
-
8
-
-
62649155943
-
A unifed approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals
-
Browning, B.L. & Browning, S.R. A unifed approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals. Am. J. Hum. Genet. 84, 210-223 (2009).
-
(2009)
Am. J. Hum. Genet
, vol.84
, pp. 210-223
-
-
Browning, B.L.1
Browning, S.R.2
-
9
-
-
67651222400
-
A fexible and accurate genotype imputation method for the next generation of genome-wide association studies
-
Howie, B.N., Donnelly, P. & Marchini, J. A fexible and accurate genotype imputation method for the next generation of genome-wide association studies. PLoS Genet. 5, e1000529 (2009).
-
(2009)
PLoS Genet
, vol.5
, pp. e1000529
-
-
Howie, B.N.1
Donnelly, P.2
Marchini, J.3
-
10
-
-
84917732232
-
Imputation and quality control steps for combining multiple genome-wide datasets
-
Verma, S.S. et al. Imputation and quality control steps for combining multiple genome-wide datasets. Front. Genet. 5, 370 (2014).
-
(2014)
Front. Genet
, vol.5
, pp. 370
-
-
Verma, S.S.1
-
11
-
-
84899540947
-
Quality control and conduct of genome-wide association meta-analyses
-
Winkler, T.W. et al. Quality control and conduct of genome-wide association meta-analyses. Nat. Protoc. 9, 1192-1212 (2014).
-
(2014)
Nat. Protoc
, vol.9
, pp. 1192-1212
-
-
Winkler, T.W.1
-
12
-
-
84864417548
-
Fast and accurate genotype imputation in genome-wide association studies through pre-phasing
-
Howie, B., Fuchsberger, C., Stephens, M., Marchini, J. & calo R Abecasis, G. Fast and accurate genotype imputation in genome-wide association studies through pre-phasing. Nat. Genet. 44, 955-959 (2012).
-
(2012)
Nat. Genet
, vol.44
, pp. 955-959
-
-
Howie, B.1
Fuchsberger, C.2
Stephens, M.3
Marchini, J.4
Calo, R.5
Abecasis, G.6
-
13
-
-
84924363528
-
Genome of the Netherlands population-specifc imputations identify an ABCA6 variant associated with cholesterol levels
-
van Leeuwen, E.M. et al. Genome of the Netherlands population-specifc imputations identify an ABCA6 variant associated with cholesterol levels. Nat. Commun. 6, 6065 (2015).
-
(2015)
Nat. Commun
, vol.6
, pp. 6065
-
-
Van Leeuwen, E.M.1
-
14
-
-
79956329346
-
Imputation of low-frequency variants using the HapMap3 benefts from large, diverse reference sets
-
Jostins, L., Morley, K.I. & Barrett, J.C. Imputation of low-frequency variants using the HapMap3 benefts from large, diverse reference sets. Eur. J. Hum. Genet. 19, 662-666 (2011).
-
(2011)
Eur. J. Hum. Genet
, vol.19
, pp. 662-666
-
-
Jostins, L.1
Morley, K.I.2
Barrett, J.C.3
-
15
-
-
84930868547
-
Rare variant genotype imputation with thousands of study-specifc whole-genome sequences: Implications for cost-effective study designs
-
Pistis, G. et al. Rare variant genotype imputation with thousands of study-specifc whole-genome sequences: implications for cost-effective study designs. Eur. J. Hum. Genet. 23, 975-983 (2014).
-
(2014)
Eur. J. Hum. Genet
, vol.23
, pp. 975-983
-
-
Pistis, G.1
-
16
-
-
80053019891
-
Haplotype phasing: Existing methods and new developments
-
Browning, S.R. & Browning, B.L. Haplotype phasing: existing methods and new developments. Nat. Rev. Genet. 12, 703-714 (2011).
-
(2011)
Nat. Rev. Genet
, vol.12
, pp. 703-714
-
-
Browning, S.R.1
Browning, B.L.2
-
17
-
-
84870605493
-
The effect of reference panels and software tools on genotype imputation
-
Nho, K. et al. The effect of reference panels and software tools on genotype imputation. AMIA Annu. Symp. Proc. 2011, 1013-1018 (2011).
-
(2011)
AMIA Annu. Symp. Proc
, vol.2011
, pp. 1013-1018
-
-
Nho, K.1
-
18
-
-
78649508578
-
Mach: Using sequence and genotype data to estimate haplotypes and unobserved genotypes
-
Li, Y., Willer, C.J., Ding, J., Scheet, P. & calo R Abecasis, G. MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes. Genet. Epidemiol. 34, 816-834 (2010).
-
(2010)
Genet. Epidemiol
, vol.34
, pp. 816-834
-
-
Li, Y.1
Willer, C.J.2
Ding, J.3
Scheet, P.4
Calo, R.5
Abecasis, G.6
-
19
-
-
84871952176
-
Improved whole-chromosome phasing for disease and population genetic studies
-
Delaneau, O., Zagury, J.-F. & Marchini, J. Improved whole-chromosome phasing for disease and population genetic studies. Nat. Methods 10, 5-6 (2013).
-
(2013)
Nat. Methods
, vol.10
, pp. 5-6
-
-
Delaneau, O.1
Zagury, J.-F.2
Marchini, J.3
-
20
-
-
79960405019
-
The variant call format and VCFtools
-
Danecek, P. et al. The variant call format and VCFtools. Bioinformatics 27, 2156-2158 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 2156-2158
-
-
Danecek, P.1
-
21
-
-
84904634116
-
FcGENE: A versatile tool for processing and transforming SNP datasets
-
Roshyara, N.R. & Scholz, M. fcGENE: a versatile tool for processing and transforming SNP datasets. PLoS ONE 9, e97589 (2014).
-
(2014)
PLoS ONE
, vol.9
, pp. e97589
-
-
Roshyara, N.R.1
Scholz, M.2
-
22
-
-
84863874689
-
Is 'forward' the same as 'plus'?...and other adventures in SNP allele nomenclature
-
Nelson, S.C., Doheny, K.F., Laurie, C.C. & Mirel, D.B. Is 'forward' the same as 'plus'?...and other adventures in SNP allele nomenclature. Trends Genet. 28, 361-363 (2012).
-
(2012)
Trends Genet
, vol.28
, pp. 361-363
-
-
Nelson, S.C.1
Doheny, K.F.2
Laurie, C.C.3
Mirel, D.B.4
-
23
-
-
84928813777
-
Genotype harmonizer: Automatic strand alignment and format conversion for genotype data integration
-
Deelen, P. et al. Genotype harmonizer: automatic strand alignment and format conversion for genotype data integration. BMC Res. Notes 7, 901 (2014).
-
(2014)
BMC Res. Notes
, vol.7
, pp. 901
-
-
Deelen, P.1
-
24
-
-
0036079158
-
The human genome browser at UCSC
-
Kent, W.J. et al. The human genome browser at UCSC. Genome Res. 12, 996-1006 (2002).
-
(2002)
Genome Res
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
-
25
-
-
84907294937
-
Gact: A genome build and allele defnition conversion tool for SNP imputation and meta-analysis in genetic association studies
-
Sulovari, A. & Li, D. Gact: a genome build and allele defnition conversion tool for SNP imputation and meta-analysis in genetic association studies. BMC Genomics 15, 610 (2014).
-
(2014)
BMC Genomics
, vol.15
, pp. 610
-
-
Sulovari, A.1
Li, D.2
-
26
-
-
58149345887
-
Practical aspects of imputation-driven meta-analysis of genome-wide association studies
-
de Bakker, P.I.W. et al. Practical aspects of imputation-driven meta-analysis of genome-wide association studies. Hum. Mol. Genet. 17, R122-R128 (2008).
-
(2008)
Hum. Mol. Genet
, vol.17
, pp. R122-R128
-
-
De Bakker, P.I.W.1
-
27
-
-
84555190223
-
Improved imputation of common and uncommon SNPs with a new reference set
-
Wang, Z. et al. Improved imputation of common and uncommon SNPs with a new reference set. Nat. Genet. 44, 6-7 (2012).
-
(2012)
Nat. Genet
, vol.44
, pp. 6-7
-
-
Wang, Z.1
-
28
-
-
0036338150
-
Merlin-rapid analysis of dense genetic maps using sparse gene fow trees
-
Abecasis, G.R., Cherny, S.S., Cookson, W.O. & Cardon, L.R. Merlin-rapid analysis of dense genetic maps using sparse gene fow trees. Nat. Genet. 30, 97-101 (2002).
-
(2002)
Nat. Genet
, vol.30
, pp. 97-101
-
-
Abecasis, G.R.1
Cherny, S.S.2
Cookson, W.O.3
Cardon, L.R.4
|