메뉴 건너뛰기




Volumn 8, Issue JUL, 2017, Pages

Tetracycline resistance genes identified from distinct soil environments in China by functional metagenomics

Author keywords

Efflux transporter; Functional metagenomics; Soil; Tetracycline destructase; Tetracycline resistance

Indexed keywords

TETRACYCLINE;

EID: 85025710473     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2017.01406     Document Type: Article
Times cited : (43)

References (37)
  • 1
    • 58549083738 scopus 로고    scopus 로고
    • Functional metagenomics reveals diverse beta-lactamases in a remote Alaskan soil
    • Allen, H. K., Moe, L. A., Rodbumrer, J., Gaarder, A., and Handelsman, J. (2009). Functional metagenomics reveals diverse beta-lactamases in a remote Alaskan soil. ISME J. 3, 243-251. doi: 10.1038/ismej.2008.86
    • (2009) ISME J , vol.3 , pp. 243-251
    • Allen, H.K.1    Moe, L.A.2    Rodbumrer, J.3    Gaarder, A.4    Handelsman, J.5
  • 2
    • 33947384990 scopus 로고    scopus 로고
    • Isolation and molecular characterization of antibiotic-resistant lactic acid bacteria from poultry and swine meat products
    • Aquilanti, L., Garofalo, C., Osimani, A., Silvestri, G., Vignaroli, C., and Clementi, F. (2007). Isolation and molecular characterization of antibiotic-resistant lactic acid bacteria from poultry and swine meat products. J. Food Prot. 70, 557-565
    • (2007) J. Food Prot , vol.70 , pp. 557-565
    • Aquilanti, L.1    Garofalo, C.2    Osimani, A.3    Silvestri, G.4    Vignaroli, C.5    Clementi, F.6
  • 3
    • 34250220631 scopus 로고    scopus 로고
    • Construction of soil environmental DNA cosmid libraries and screening for clones that produce biologically active small molecules
    • Brady, S. F. (2007). Construction of soil environmental DNA cosmid libraries and screening for clones that produce biologically active small molecules. Nat. Protoc. 2, 1297-1305. doi: 10.1038/nprot.2007.195
    • (2007) Nat. Protoc , vol.2 , pp. 1297-1305
    • Brady, S.F.1
  • 4
    • 77957980707 scopus 로고    scopus 로고
    • Origins and evolution of antibiotic resistance
    • Davies, J., and Davies, D. (2010). Origins and evolution of antibiotic resistance. Microbiol. Mol. Biol. Rev. 74, 417-433. doi: 10.1128/MMBR.00016-10
    • (2010) Microbiol. Mol. Biol. Rev , vol.74 , pp. 417-433
    • Davies, J.1    Davies, D.2
  • 6
    • 84901652050 scopus 로고    scopus 로고
    • Bacterial phylogeny structures soil resistomes across habitats
    • Forsberg, K. J., Patel, S., Gibson, M. K., Lauber, C. L., Knight, R., Fierer, N., et al. (2014). Bacterial phylogeny structures soil resistomes across habitats. Nature 509, 612-616. doi: 10.1038/nature13377
    • (2014) Nature , vol.509 , pp. 612-616
    • Forsberg, K.J.1    Patel, S.2    Gibson, M.K.3    Lauber, C.L.4    Knight, R.5    Fierer, N.6
  • 7
    • 84937712866 scopus 로고    scopus 로고
    • The tetracycline destructases: a novel family of tetracycline-inactivating enzymes
    • Forsberg, K. J., Patel, S., Wencewicz, T. A., and Dantas, G. (2015). The tetracycline destructases: a novel family of tetracycline-inactivating enzymes. Chem. Biol. 22, 888-897. doi: 10.1016/j.chembiol.2015.05.017
    • (2015) Chem. Biol , vol.22 , pp. 888-897
    • Forsberg, K.J.1    Patel, S.2    Wencewicz, T.A.3    Dantas, G.4
  • 8
    • 84865531061 scopus 로고    scopus 로고
    • The shared antibiotic resistome of soil bacteria and human pathogens
    • Forsberg, K. J., Reyes, A., Wang, B., Selleck, E. M., Sommer, M. O., and Dantas, G. (2012). The shared antibiotic resistome of soil bacteria and human pathogens. Science 337, 1107-1111. doi: 10.1126/science.1220761
    • (2012) Science , vol.337 , pp. 1107-1111
    • Forsberg, K.J.1    Reyes, A.2    Wang, B.3    Selleck, E.M.4    Sommer, M.O.5    Dantas, G.6
  • 9
    • 84921632491 scopus 로고    scopus 로고
    • Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology
    • Gibson, M. K., Forsberg, K. J., and Dantas, G. (2015). Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology. ISME J. 9, 207-216. doi: 10.1038/ismej.2014.106
    • (2015) ISME J , vol.9 , pp. 207-216
    • Gibson, M.K.1    Forsberg, K.J.2    Dantas, G.3
  • 10
    • 84937697874 scopus 로고    scopus 로고
    • Antibiotic resistance in the environment: not the usual suspects
    • Graham, D. W. (2015). Antibiotic resistance in the environment: not the usual suspects. Chem. Biol. 22, 805-806. doi: 10.1016/j.chembiol.2015.07.001
    • (2015) Chem. Biol , vol.22 , pp. 805-806
    • Graham, D.W.1
  • 11
    • 84948738216 scopus 로고    scopus 로고
    • Identification and characterization of two novel esterases from a metagenomic library
    • Gu, X., Wang, S., Wang, S., Zhao, L. X., Cao, M., and Feng, Z. (2015). Identification and characterization of two novel esterases from a metagenomic library. Food Sci. Technol. Res. 21, 649-657. doi: 10.3136/fstr.21.649
    • (2015) Food Sci. Technol. Res , vol.21 , pp. 649-657
    • Gu, X.1    Wang, S.2    Wang, S.3    Zhao, L.X.4    Cao, M.5    Feng, Z.6
  • 12
    • 74949117633 scopus 로고    scopus 로고
    • Evidence of increasing antibiotic resistance gene abundances in archived soils since 1940
    • Knapp, C. W., Dolfing, J., Ehlert, P. A., and Graham, D. W. (2010). Evidence of increasing antibiotic resistance gene abundances in archived soils since 1940. Environ. Sci. Technol. 44, 580-587. doi: 10.1021/es901221x
    • (2010) Environ. Sci. Technol , vol.44 , pp. 580-587
    • Knapp, C.W.1    Dolfing, J.2    Ehlert, P.A.3    Graham, D.W.4
  • 14
    • 49249106618 scopus 로고    scopus 로고
    • The mildiomycin biosynthesis: initial steps for sequential generation of 5-hydroxymethylcytidine 5'-monophosphate and 5-hydroxymethylcytosine in Streptoverticillium rimofaciens ZJU5119
    • Li, L., Xu, Z., Xu, X., Wu, J., Zhang, Y., He, X., et al. (2008). The mildiomycin biosynthesis: initial steps for sequential generation of 5-hydroxymethylcytidine 5'-monophosphate and 5-hydroxymethylcytosine in Streptoverticillium rimofaciens ZJU5119. ChemBioChem 9, 1286-1294. doi: 10.1002/cbic.200800008
    • (2008) ChemBioChem , vol.9 , pp. 1286-1294
    • Li, L.1    Xu, Z.2    Xu, X.3    Wu, J.4    Zhang, Y.5    He, X.6
  • 15
    • 68949110351 scopus 로고    scopus 로고
    • Efflux-mediated drug resistance in bacteria: an update
    • Li, X. Z., and Nikaido, H. (2009). Efflux-mediated drug resistance in bacteria: an update. Drugs 69, 1555-1623. doi: 10.2165/11317030-000000000-00000
    • (2009) Drugs , vol.69 , pp. 1555-1623
    • Li, X.Z.1    Nikaido, H.2
  • 16
    • 84957433508 scopus 로고    scopus 로고
    • Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: a microbiological and molecular biological study
    • Liu, Y. Y., Wang, Y., Walsh, T. R., Yi, L. X., Zhang, R., Spencer, J., et al. (2016). Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: a microbiological and molecular biological study. Lancet Infect. Dis. 16, 161-168. doi: 10.1016/S1473-3099(15)00424-7
    • (2016) Lancet Infect. Dis , vol.16 , pp. 161-168
    • Liu, Y.Y.1    Wang, Y.2    Walsh, T.R.3    Yi, L.X.4    Zhang, R.5    Spencer, J.6
  • 17
    • 84953450034 scopus 로고    scopus 로고
    • Metagenomic assembly reveals hosts of antibiotic resistance genes and the shared resistome in pig, chicken, and human feces
    • Ma, L., Xia, Y., Li, B., Yang, Y., Li, L. G., Tiedje, J. M., et al. (2016). Metagenomic assembly reveals hosts of antibiotic resistance genes and the shared resistome in pig, chicken, and human feces. Environ. Sci. Technol. 50, 420-427. doi: 10.1021/acs.est.5b03522
    • (2016) Environ. Sci. Technol , vol.50 , pp. 420-427
    • Ma, L.1    Xia, Y.2    Li, B.3    Yang, Y.4    Li, L.G.5    Tiedje, J.M.6
  • 18
    • 47749155981 scopus 로고    scopus 로고
    • Antibiotics and antibiotic resistance genes in natural environments
    • Martinez, J. L. (2008). Antibiotics and antibiotic resistance genes in natural environments. Science 321, 365-367. doi: 10.1126/science.1159483
    • (2008) Science , vol.321 , pp. 365-367
    • Martinez, J.L.1
  • 20
    • 24344501288 scopus 로고    scopus 로고
    • Tigecycline is modified by the flavin-dependent monooxygenase TetX
    • Moore, I. F., Hughes, D. W., and Wright, G. D. (2005). Tigecycline is modified by the flavin-dependent monooxygenase TetX. Biochemistry 44, 11829-11835. doi: 10.1021/bi0506066
    • (2005) Biochemistry , vol.44 , pp. 11829-11835
    • Moore, I.F.1    Hughes, D.W.2    Wright, G.D.3
  • 21
    • 0036011073 scopus 로고    scopus 로고
    • New Mg2+-dependent oxytetracycline resistance determinant Tet 34 in Vibrio isolates from marine fish intestinal contents
    • Nonaka, L., and Suzuki, S. (2002). New Mg2+-dependent oxytetracycline resistance determinant Tet 34 in Vibrio isolates from marine fish intestinal contents. Antimicrob. Agents Chemother. 46, 1550-1552
    • (2002) Antimicrob. Agents Chemother , vol.46 , pp. 1550-1552
    • Nonaka, L.1    Suzuki, S.2
  • 22
    • 85016566539 scopus 로고    scopus 로고
    • Transferable antibiotic resistances in marketed edible grasshoppers (Locusta migratoria migratorioides)
    • Osimani, A., Garofalo, C., Aquilanti, L., Milanovic, V., Cardinali, F., Taccari, M., et al. (2017). Transferable antibiotic resistances in marketed edible grasshoppers (Locusta migratoria migratorioides). J. Food Sci. 82, 1184-1192. doi: 10.1111/1750-3841.13700
    • (2017) J. Food Sci , vol.82 , pp. 1184-1192
    • Osimani, A.1    Garofalo, C.2    Aquilanti, L.3    Milanovic, V.4    Cardinali, F.5    Taccari, M.6
  • 23
    • 0023798513 scopus 로고
    • The cryptic tetracycline resistance determinant on Tn4400 mediates tetracycline degradation as well as tetracycline efflux
    • Park, B. H., and Levy, S. B. (1988). The cryptic tetracycline resistance determinant on Tn4400 mediates tetracycline degradation as well as tetracycline efflux. Antimicrob. Agents Chemother. 32, 1797-1800
    • (1988) Antimicrob. Agents Chemother , vol.32 , pp. 1797-1800
    • Park, B.H.1    Levy, S.B.2
  • 24
    • 84907939423 scopus 로고    scopus 로고
    • The antibiotic resistome: What's new?
    • Perry, J. A., Westman, E. L., and Wright, G. D. (2014). The antibiotic resistome: What's new? Curr. Opin. Microbiol. 21, 45-50. doi: 10.1016/j.mib.2014.09.002
    • (2014) Curr. Opin. Microbiol , vol.21 , pp. 45-50
    • Perry, J.A.1    Westman, E.L.2    Wright, G.D.3
  • 25
    • 84920168694 scopus 로고    scopus 로고
    • Forces shaping the antibiotic resistome
    • Perry, J. A., and Wright, G. D. (2014). Forces shaping the antibiotic resistome. Bioessays 36, 1179-1184. doi: 10.1002/bies.201400128
    • (2014) Bioessays , vol.36 , pp. 1179-1184
    • Perry, J.A.1    Wright, G.D.2
  • 26
    • 17144412507 scopus 로고    scopus 로고
    • Update on acquired tetracycline resistance genes
    • Roberts, M. C. (2005). Update on acquired tetracycline resistance genes. FEMS Microbiol. Lett. 245, 195-203. doi: 10.1016/j.femsle.2005.02.034
    • (2005) FEMS Microbiol. Lett , vol.245 , pp. 195-203
    • Roberts, M.C.1
  • 27
    • 84884230087 scopus 로고    scopus 로고
    • Food and human gut as reservoirs of transferable antibiotic resistance encoding genes
    • Rolain, J. M. (2013). Food and human gut as reservoirs of transferable antibiotic resistance encoding genes. Front. Microbiol. 4:173. doi: 10.3389/fmicb.2013.00173
    • (2013) Front. Microbiol , vol.4 , pp. 173
    • Rolain, J.M.1
  • 28
    • 83055186603 scopus 로고    scopus 로고
    • Ecology drives a global network of gene exchange connecting the human microbiome
    • Smillie, C. S., Smith, M. B., Friedman, J., Cordero, O. X., David, L. A., and Alm, E. J. (2011). Ecology drives a global network of gene exchange connecting the human microbiome. Nature 480, 241-244. doi: 10.1038/nature10571
    • (2011) Nature , vol.480 , pp. 241-244
    • Smillie, C.S.1    Smith, M.B.2    Friedman, J.3    Cordero, O.X.4    David, L.A.5    Alm, E.J.6
  • 29
    • 69549086653 scopus 로고    scopus 로고
    • Functional characterization of the antibiotic resistance reservoir in the human microflora
    • Sommer, M. O., Dantas, G., and Church, G. M. (2009). Functional characterization of the antibiotic resistance reservoir in the human microflora. Science 325, 1128-1131. doi: 10.1126/science.1176950
    • (2009) Science , vol.325 , pp. 1128-1131
    • Sommer, M.O.1    Dantas, G.2    Church, G.M.3
  • 31
    • 84897112879 scopus 로고    scopus 로고
    • Identification of a metagenomic gene cluster containing a new class A beta-lactamase and toxin-antitoxin systems
    • Vercammen, K., Garcia-Armisen, T., Goeders, N., Van Melderen, L., Bodilis, J., and Cornelis, P. (2013). Identification of a metagenomic gene cluster containing a new class A beta-lactamase and toxin-antitoxin systems. Microbiologyopen 2, 674-683. doi: 10.1002/mbo3.104
    • (2013) Microbiologyopen , vol.2 , pp. 674-683
    • Vercammen, K.1    Garcia-Armisen, T.2    Goeders, N.3    Van Melderen, L.4    Bodilis, J.5    Cornelis, P.6
  • 32
    • 0034680167 scopus 로고    scopus 로고
    • Molecular mechanisms that confer antibacterial drug resistance
    • Walsh, C. (2000). Molecular mechanisms that confer antibacterial drug resistance. Nature 406, 775-781. doi: 10.1038/35021219
    • (2000) Nature , vol.406 , pp. 775-781
    • Walsh, C.1
  • 33
    • 84864051158 scopus 로고    scopus 로고
    • The transfer of antibiotic resistance from food to humans: facts, implications and future directions
    • Wang, H., McEntire, J. C., Zhang, L., Li, X., and Doyle, M. (2012). The transfer of antibiotic resistance from food to humans: facts, implications and future directions. Rev. Sci. Tech. 31, 249-260
    • (2012) Rev. Sci. Tech , vol.31 , pp. 249-260
    • Wang, H.1    McEntire, J.C.2    Zhang, L.3    Li, X.4    Doyle, M.5
  • 34
    • 85011655568 scopus 로고    scopus 로고
    • Comprehensive resistome analysis reveals the prevalence of NDM and MCR-1 in Chinese poultry production
    • Wang, Y., Zhang, R., Li, J., Wu, Z., Yin, W., Schwarz, S., et al. (2017). Comprehensive resistome analysis reveals the prevalence of NDM and MCR-1 in Chinese poultry production. Nat. Microbiol. 2:16260. doi: 10.1038/nmicrobiol.2016.260
    • (2017) Nat. Microbiol , vol.2 , pp. 16260
    • Wang, Y.1    Zhang, R.2    Li, J.3    Wu, Z.4    Yin, W.5    Schwarz, S.6
  • 35
    • 33847151750 scopus 로고    scopus 로고
    • The antibiotic resistome: the nexus of chemical and genetic diversity
    • Wright, G. D. (2007). The antibiotic resistome: the nexus of chemical and genetic diversity. Nat. Rev. Microbiol. 5, 175-186. doi: 10.1038/nrmicro1614
    • (2007) Nat. Rev. Microbiol , vol.5 , pp. 175-186
    • Wright, G.D.1
  • 36
    • 10644286346 scopus 로고    scopus 로고
    • TetX is a flavin-dependent monooxygenase conferring resistance to tetracycline antibiotics
    • Yang, W., Moore, I. F., Koteva, K. P., Bareich, D. C., Hughes, D. W., and Wright, G. D. (2004). TetX is a flavin-dependent monooxygenase conferring resistance to tetracycline antibiotics. J. Biol. Chem. 279, 52346-52352. doi: 10.1074/jbc. M409573200
    • (2004) J. Biol. Chem , vol.279 , pp. 52346-52352
    • Yang, W.1    Moore, I.F.2    Koteva, K.P.3    Bareich, D.C.4    Hughes, D.W.5    Wright, G.D.6
  • 37
    • 84863012322 scopus 로고    scopus 로고
    • A non-restricting and non-methylating Escherichia coli strain for DNA cloning and high-throughput conjugation to Streptomyces coelicolor
    • Zhou, H., Wang, Y., Yu, Y., Bai, T., Chen, L., Liu, P., et al. (2012). A non-restricting and non-methylating Escherichia coli strain for DNA cloning and high-throughput conjugation to Streptomyces coelicolor. Curr. Microbiol. 64, 185-190. doi: 10.1007/s00284-011-0048-5
    • (2012) Curr. Microbiol , vol.64 , pp. 185-190
    • Zhou, H.1    Wang, Y.2    Yu, Y.3    Bai, T.4    Chen, L.5    Liu, P.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.