메뉴 건너뛰기




Volumn 36, Issue 12, 2014, Pages 1179-1184

Forces shaping the antibiotic resistome

Author keywords

Antibiotic resistance; Functional metagenomics; Horizontal gene transfer; Resistome

Indexed keywords

ANTIINFECTIVE AGENT;

EID: 84920168694     PISSN: 02659247     EISSN: 15211878     Source Type: Journal    
DOI: 10.1002/bies.201400128     Document Type: Article
Times cited : (58)

References (54)
  • 1
    • 84920174472 scopus 로고    scopus 로고
    • Antibiotic resistant threats in the United States . Centers for Disease Control and Prevention. Atlanta, GA.
    • Antibiotic resistant threats in the United States 2013. Centers for Disease Control and Prevention. Atlanta, GA.
    • (2013)
  • 3
    • 77955043924 scopus 로고    scopus 로고
    • The human microbiome harbors a diverse reservoir of antibiotic resistance genes
    • Sommer MO, Church GM, Dantas G. 2010. The human microbiome harbors a diverse reservoir of antibiotic resistance genes. Virulence 1: 299-303.
    • (2010) Virulence , vol.1 , pp. 299-303
    • Sommer, M.O.1    Church, G.M.2    Dantas, G.3
  • 4
    • 79952306616 scopus 로고    scopus 로고
    • Antibiotic resistance genes in the bacteriophage DNA fraction of environmental samples
    • Colomer-Lluch M, Jofre J, Muniesa M. 2011. Antibiotic resistance genes in the bacteriophage DNA fraction of environmental samples. PLoS One 6: e17549.
    • (2011) PLoS One , vol.6 , pp. e17549
    • Colomer-Lluch, M.1    Jofre, J.2    Muniesa, M.3
  • 5
    • 66649105857 scopus 로고    scopus 로고
    • Antibiotic-resistance profile in environmental bacteria isolated from penicillin production wastewater treatment plant and the receiving river
    • Li D, Yang M, Hu J, Zhang J, et al. 2009. Antibiotic-resistance profile in environmental bacteria isolated from penicillin production wastewater treatment plant and the receiving river. Environ Microbiol 11: 1506-7.
    • (2009) Environ Microbiol , vol.11 , pp. 1506-1507
    • Li, D.1    Yang, M.2    Hu, J.3    Zhang, J.4
  • 6
  • 7
    • 84859439313 scopus 로고    scopus 로고
    • Broad diversity of conjugative plasmids in integron-carrying bacteria from wastewater environments
    • Moura A, Oliveira C, Henriques I, Smalla K, et al. 2012. Broad diversity of conjugative plasmids in integron-carrying bacteria from wastewater environments. FEMS Microbiol Lett 330: 157-64.
    • (2012) FEMS Microbiol Lett , vol.330 , pp. 157-164
    • Moura, A.1    Oliveira, C.2    Henriques, I.3    Smalla, K.4
  • 8
    • 77949568092 scopus 로고    scopus 로고
    • Call of the wild: antibiotic resistance genes in natural environments
    • Allen HK, Donato J, Wang HH, Cloud-Hansen KA, et al. 2010. Call of the wild: antibiotic resistance genes in natural environments. Nat Rev Microbiol 8: 251-9.
    • (2010) Nat Rev Microbiol , vol.8 , pp. 251-259
    • Allen, H.K.1    Donato, J.2    Wang, H.H.3    Cloud-Hansen, K.A.4
  • 9
    • 69249205465 scopus 로고    scopus 로고
    • Environmental pollution by antibiotics and by antibiotic resistance determinants
    • Martinez JL. 2009. Environmental pollution by antibiotics and by antibiotic resistance determinants. Environ Pollut 157: 2893-902.
    • (2009) Environ Pollut , vol.157 , pp. 2893-2902
    • Martinez, J.L.1
  • 10
    • 42049087610 scopus 로고    scopus 로고
    • Influence of industrial contamination on mobile genetic elements: class 1 integron abundance and gene cassette structure in aquatic bacterial communities
    • Wright MS, Baker-Austin C, Lindell AH, Stepanauskas R, et al. 2008. Influence of industrial contamination on mobile genetic elements: class 1 integron abundance and gene cassette structure in aquatic bacterial communities. ISME J 2: 417-28.
    • (2008) ISME J , vol.2 , pp. 417-428
    • Wright, M.S.1    Baker-Austin, C.2    Lindell, A.H.3    Stepanauskas, R.4
  • 11
    • 84864374018 scopus 로고    scopus 로고
    • Integron involvement in environmental spread of antibiotic resistance
    • Stalder T, Barraud O, Casellas M, Dagot C, et al. 2012. Integron involvement in environmental spread of antibiotic resistance. Front Microbiol 3: 119.
    • (2012) Front Microbiol , vol.3 , pp. 119
    • Stalder, T.1    Barraud, O.2    Casellas, M.3    Dagot, C.4
  • 12
    • 79960313230 scopus 로고    scopus 로고
    • Lateral genetic transfer and the construction of genetic exchange communities
    • Skippington E, Ragan MA. 2011. Lateral genetic transfer and the construction of genetic exchange communities. FEMS Microbiol Rev 35: 707-35.
    • (2011) FEMS Microbiol Rev , vol.35 , pp. 707-735
    • Skippington, E.1    Ragan, M.A.2
  • 13
    • 84872574616 scopus 로고    scopus 로고
    • The role of the natural environment in the emergence of antibiotic resistance in gram-negative bacteria
    • Wellington EM, Boxall AB, Cross P, Feil EJ, et al. 2013. The role of the natural environment in the emergence of antibiotic resistance in gram-negative bacteria. Lancet Infect Dis 13: 155-65.
    • (2013) Lancet Infect Dis , vol.13 , pp. 155-165
    • Wellington, E.M.1    Boxall, A.B.2    Cross, P.3    Feil, E.J.4
  • 14
    • 0036721015 scopus 로고    scopus 로고
    • Beta-lactamases of Kluyvera ascorbata, probable progenitors of some plasmid-encoded CTX-M types
    • Humeniuk C, Arlet G, Gautier V, Grimont P, et al. 2002. Beta-lactamases of Kluyvera ascorbata, probable progenitors of some plasmid-encoded CTX-M types. Antimicrob Agents Chemother 46: 3045-9.
    • (2002) Antimicrob Agents Chemother , vol.46 , pp. 3045-3049
    • Humeniuk, C.1    Arlet, G.2    Gautier, V.3    Grimont, P.4
  • 17
    • 77957820588 scopus 로고    scopus 로고
    • Antibiotic resistance in the environment: a link to the clinic
    • Wright GD. 2010. Antibiotic resistance in the environment: a link to the clinic? Curr Opin Microbiol 13: 589-94.
    • (2010) Curr Opin Microbiol , vol.13 , pp. 589-594
    • Wright, G.D.1
  • 18
    • 84859270554 scopus 로고    scopus 로고
    • Antibiotic resistance is ancient: implications for drug discovery
    • Wright GD, Poinar H. 2012. Antibiotic resistance is ancient: implications for drug discovery. Trends Microbiol 20: 157-9.
    • (2012) Trends Microbiol , vol.20 , pp. 157-159
    • Wright, G.D.1    Poinar, H.2
  • 19
    • 84880831180 scopus 로고    scopus 로고
    • Metagenome-wide analysis of antibiotic resistance genes in a large cohort of human gut microbiota
    • Hu Y, Yang X, Qin J, Lu N, et al. 2013. Metagenome-wide analysis of antibiotic resistance genes in a large cohort of human gut microbiota. Nat Commun 4: 2151.
    • (2013) Nat Commun , vol.4 , pp. 2151
    • Hu, Y.1    Yang, X.2    Qin, J.3    Lu, N.4
  • 20
    • 84880050412 scopus 로고    scopus 로고
    • Country-specific antibiotic use practices impact the human gut resistome
    • Forslund K, Sunagawa S, Kultima JR, Mende DR, et al. 2013. Country-specific antibiotic use practices impact the human gut resistome. Genome Res 23: 1163-9.
    • (2013) Genome Res , vol.23 , pp. 1163-1169
    • Forslund, K.1    Sunagawa, S.2    Kultima, J.R.3    Mende, D.R.4
  • 21
    • 84893760545 scopus 로고    scopus 로고
    • Metagenomic insights into the human gut resistome and the forces that shape it
    • Forslund K, Sunagawa S, Coelho LP, Bork P. 2014. Metagenomic insights into the human gut resistome and the forces that shape it. BioEssays 36: 316-29.
    • (2014) BioEssays , vol.36 , pp. 316-329
    • Forslund, K.1    Sunagawa, S.2    Coelho, L.P.3    Bork, P.4
  • 22
    • 4344587758 scopus 로고    scopus 로고
    • Uncultured soil bacteria are a reservoir of new antibiotic resistance genes
    • Riesenfeld CS, Goodman RM, Handelsman J. 2004. Uncultured soil bacteria are a reservoir of new antibiotic resistance genes. Environ Microbiol 6: 981-9.
    • (2004) Environ Microbiol , vol.6 , pp. 981-989
    • Riesenfeld, C.S.1    Goodman, R.M.2    Handelsman, J.3
  • 23
    • 69549086653 scopus 로고    scopus 로고
    • Functional characterization of the antibiotic resistance reservoir in the human microflora
    • Sommer MO, Dantas G, Church GM. 2009. Functional characterization of the antibiotic resistance reservoir in the human microflora. Science 325: 1128-31.
    • (2009) Science , vol.325 , pp. 1128-1131
    • Sommer, M.O.1    Dantas, G.2    Church, G.M.3
  • 24
    • 84865531061 scopus 로고    scopus 로고
    • The shared antibiotic resistome of soil bacteria and human pathogens
    • Forsberg KJ, Reyes A, Wang B, Selleck EM, et al. 2012. The shared antibiotic resistome of soil bacteria and human pathogens. Science 337: 1107-11.
    • (2012) Science , vol.337 , pp. 1107-1111
    • Forsberg, K.J.1    Reyes, A.2    Wang, B.3    Selleck, E.M.4
  • 25
    • 84884222944 scopus 로고    scopus 로고
    • Novel resistance functions uncovered using functional metagenomic investigations of resistance reservoirs
    • Pehrsson EC, Forsberg KJ, Gibson MK, Ahmadi S, et al. 2013. Novel resistance functions uncovered using functional metagenomic investigations of resistance reservoirs. Front Microbiol 4: 145.
    • (2013) Front Microbiol , vol.4 , pp. 145
    • Pehrsson, E.C.1    Forsberg, K.J.2    Gibson, M.K.3    Ahmadi, S.4
  • 26
    • 70149086707 scopus 로고    scopus 로고
    • Mobilization of a Tn402-like class 1 integron with a novel cassette array via flanking miniature inverted-repeat transposable element-like structures
    • Gillings MR, Labbate M, Sajjad A, Giguere NJ, et al. 2009. Mobilization of a Tn402-like class 1 integron with a novel cassette array via flanking miniature inverted-repeat transposable element-like structures. Appl Environ Microbiol 75: 6002-4.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 6002-6004
    • Gillings, M.R.1    Labbate, M.2    Sajjad, A.3    Giguere, N.J.4
  • 27
    • 84901652050 scopus 로고    scopus 로고
    • Bacterial phylogeny structures soil resistomes across habitats
    • Forsberg KJ, Patel S, Gibson MK, Lauber CL, et al. 2014. Bacterial phylogeny structures soil resistomes across habitats. Nature 509: 612-6.
    • (2014) Nature , vol.509 , pp. 612-616
    • Forsberg, K.J.1    Patel, S.2    Gibson, M.K.3    Lauber, C.L.4
  • 28
    • 84859574738 scopus 로고    scopus 로고
    • Antibiotic resistance is prevalent in an isolated cave microbiome
    • Bhullar K, Waglechner N, Pawlowski A, Koteva K, et al. 2012. Antibiotic resistance is prevalent in an isolated cave microbiome. PLoS One 7: e34953.
    • (2012) PLoS One , vol.7 , pp. e34953
    • Bhullar, K.1    Waglechner, N.2    Pawlowski, A.3    Koteva, K.4
  • 29
    • 84861335957 scopus 로고    scopus 로고
    • Are humans increasing bacterial evolvability
    • Gillings MR, Stokes HW. 2012. Are humans increasing bacterial evolvability? Trends Ecol Evol 27: 346-52.
    • (2012) Trends Ecol Evol , vol.27 , pp. 346-352
    • Gillings, M.R.1    Stokes, H.W.2
  • 30
    • 83055186603 scopus 로고    scopus 로고
    • Ecology drives a global network of gene exchange connecting the human microbiome
    • Smillie CS, Smith MB, Friedman J, Cordero OX, et al. 2011. Ecology drives a global network of gene exchange connecting the human microbiome. Nature 480: 241-4.
    • (2011) Nature , vol.480 , pp. 241-244
    • Smillie, C.S.1    Smith, M.B.2    Friedman, J.3    Cordero, O.X.4
  • 31
    • 0036848573 scopus 로고    scopus 로고
    • The ecology of transfer of mobile genetic elements
    • van Elsas JD, Bailey MJ. 2002. The ecology of transfer of mobile genetic elements. FEMS Microbiol Ecol 42: 187-97.
    • (2002) FEMS Microbiol Ecol , vol.42 , pp. 187-197
    • van Elsas, J.D.1    Bailey, M.J.2
  • 32
    • 84855264889 scopus 로고    scopus 로고
    • Horizontal gene exchange in environmental microbiota
    • Aminov RI. 2011. Horizontal gene exchange in environmental microbiota. Front Microbiol 2: 158.
    • (2011) Front Microbiol , vol.2 , pp. 158
    • Aminov, R.I.1
  • 33
  • 34
    • 84884228709 scopus 로고    scopus 로고
    • The antibiotic resistance "mobilome": searching for the link between environment and clinic
    • Perry JA, Wright GD. 2013. The antibiotic resistance "mobilome": searching for the link between environment and clinic. Front Microbiol 4: 138.
    • (2013) Front Microbiol , vol.4 , pp. 138
    • Perry, J.A.1    Wright, G.D.2
  • 35
    • 79960961566 scopus 로고    scopus 로고
    • Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches
    • Wiedenbeck J, Cohan FM. 2011. Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches. FEMS Microbiol Rev 35: 957-76.
    • (2011) FEMS Microbiol Rev , vol.35 , pp. 957-976
    • Wiedenbeck, J.1    Cohan, F.M.2
  • 36
    • 84921632491 scopus 로고    scopus 로고
    • Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology
    • in press
    • Gibson MK, Forsberg KJ, Dantas G. 2014. Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology. ISME J, in press, DOI:10.1038/ismej.2014.106.
    • (2014) ISME J
    • Gibson, M.K.1    Forsberg, K.J.2    Dantas, G.3
  • 37
    • 84865832282 scopus 로고    scopus 로고
    • Ecological populations of bacteria act as socially cohesive units of antibiotic production and resistance
    • Cordero OX, Wildschutte H, Kirkup B, Proehl S, et al. 2012. Ecological populations of bacteria act as socially cohesive units of antibiotic production and resistance. Science 337: 1228-31.
    • (2012) Science , vol.337 , pp. 1228-1231
    • Cordero, O.X.1    Wildschutte, H.2    Kirkup, B.3    Proehl, S.4
  • 38
    • 83655197489 scopus 로고    scopus 로고
    • What counters antibiotic resistance in nature
    • Chait R, Vetsigian K, Kishony R. 2012. What counters antibiotic resistance in nature? Nat Chem Biol 8: 2-5.
    • (2012) Nat Chem Biol , vol.8 , pp. 2-5
    • Chait, R.1    Vetsigian, K.2    Kishony, R.3
  • 39
    • 0020645470 scopus 로고
    • Conjugative plasmids in bacteria of the 'pre-antibiotic' era
    • Hughes VM, Datta N. 1983. Conjugative plasmids in bacteria of the 'pre-antibiotic' era. Nature 302: 725-6.
    • (1983) Nature , vol.302 , pp. 725-726
    • Hughes, V.M.1    Datta, N.2
  • 40
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • Ochman H, Lawrence JG, Groisman EA. 2000. Lateral gene transfer and the nature of bacterial innovation. Nature 405: 299-304.
    • (2000) Nature , vol.405 , pp. 299-304
    • Ochman, H.1    Lawrence, J.G.2    Groisman, E.A.3
  • 41
    • 33947260230 scopus 로고    scopus 로고
    • Molecular mechanisms of antibacterial multidrug resistance
    • Alekshun MN, Levy SB. 2007. Molecular mechanisms of antibacterial multidrug resistance. Cell 128: 1037-50.
    • (2007) Cell , vol.128 , pp. 1037-1050
    • Alekshun, M.N.1    Levy, S.B.2
  • 42
    • 84874494333 scopus 로고    scopus 로고
    • Diverse and abundant antibiotic resistance genes in Chinese swine farms
    • Zhu YG, Johnson TA, Su JQ, Qiao M, et al. 2013. Diverse and abundant antibiotic resistance genes in Chinese swine farms. Proc Natl Acad Sci USA 110: 3435-40.
    • (2013) Proc Natl Acad Sci USA , vol.110 , pp. 3435-3440
    • Zhu, Y.G.1    Johnson, T.A.2    Su, J.Q.3    Qiao, M.4
  • 43
    • 79951882096 scopus 로고    scopus 로고
    • Pyrosequencing of antibiotic-contaminated river sediments reveals high levels of resistance and gene transfer elements
    • Kristiansson E, Fick J, Janzon A, Grabic R, et al. 2011. Pyrosequencing of antibiotic-contaminated river sediments reveals high levels of resistance and gene transfer elements. PLoS One 6: e17038.
    • (2011) PLoS One , vol.6 , pp. e17038
    • Kristiansson, E.1    Fick, J.2    Janzon, A.3    Grabic, R.4
  • 44
    • 84868578288 scopus 로고    scopus 로고
    • Correlation between upstream human activities and riverine antibiotic resistance genes
    • Pruden A, Arabi M, Storteboom HN. 2012. Correlation between upstream human activities and riverine antibiotic resistance genes. Environ Sci Technol 46: 11541-9.
    • (2012) Environ Sci Technol , vol.46 , pp. 11541-11549
    • Pruden, A.1    Arabi, M.2    Storteboom, H.N.3
  • 45
    • 69949162470 scopus 로고    scopus 로고
    • Detection of 140 clinically relevant antibiotic-resistance genes in the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to selected antibiotics
    • Szczepanowski R, Linke B, Krahn I, Gartemann KH, et al. 2009. Detection of 140 clinically relevant antibiotic-resistance genes in the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to selected antibiotics. Microbiology 155: 2306-19.
    • (2009) Microbiology , vol.155 , pp. 2306-2319
    • Szczepanowski, R.1    Linke, B.2    Krahn, I.3    Gartemann, K.H.4
  • 46
    • 34547345994 scopus 로고    scopus 로고
    • The effects of subtherapeutic antibiotic use in farm animals on the proliferation and persistence of antibiotic resistance among soil bacteria
    • Ghosh S, LaPara TM. 2007. The effects of subtherapeutic antibiotic use in farm animals on the proliferation and persistence of antibiotic resistance among soil bacteria. ISME J 1: 191-203.
    • (2007) ISME J , vol.1 , pp. 191-203
    • Ghosh, S.1    LaPara, T.M.2
  • 47
    • 79959306747 scopus 로고    scopus 로고
    • Antibiotic resistance gene spread due to manure application on agricultural fields
    • Heuer H, Schmitt H, Smalla K. 2011. Antibiotic resistance gene spread due to manure application on agricultural fields. Curr Opin Microbiol 14: 236-43.
    • (2011) Curr Opin Microbiol , vol.14 , pp. 236-243
    • Heuer, H.1    Schmitt, H.2    Smalla, K.3
  • 48
    • 79960951300 scopus 로고    scopus 로고
    • Gene flow, mobile genetic elements and the recruitment of antibiotic resistance genes into Gram-negative pathogens
    • Stokes HW, Gillings MR. 2011. Gene flow, mobile genetic elements and the recruitment of antibiotic resistance genes into Gram-negative pathogens. FEMS Microbiol Rev 35: 790-819.
    • (2011) FEMS Microbiol Rev , vol.35 , pp. 790-819
    • Stokes, H.W.1    Gillings, M.R.2
  • 49
    • 84891783585 scopus 로고    scopus 로고
    • Balancing water sustainability and public health goals in the face of growing concerns about antibiotic resistance
    • Pruden A. 2014. Balancing water sustainability and public health goals in the face of growing concerns about antibiotic resistance. Environ Sci Technol 48: 5-14.
    • (2014) Environ Sci Technol , vol.48 , pp. 5-14
    • Pruden, A.1
  • 50
    • 84875825656 scopus 로고    scopus 로고
    • Evolutionary consequences of antibiotic use for the resistome, mobilome and microbial pangenome
    • Gillings MR. 2013. Evolutionary consequences of antibiotic use for the resistome, mobilome and microbial pangenome. Front Microbiol 4: 4.
    • (2013) Front Microbiol , vol.4 , pp. 4
    • Gillings, M.R.1
  • 51
    • 79956048989 scopus 로고    scopus 로고
    • Aquatic systems: maintaining, mixing and mobilising antimicrobial resistance
    • Taylor NG, Verner-Jeffreys DW, Baker-Austin C. 2011. Aquatic systems: maintaining, mixing and mobilising antimicrobial resistance? Trends Ecol Evol 26: 278-84.
    • (2011) Trends Ecol Evol , vol.26 , pp. 278-284
    • Taylor, N.G.1    Verner-Jeffreys, D.W.2    Baker-Austin, C.3
  • 52
    • 77953037744 scopus 로고    scopus 로고
    • Antibiotic resistance characteristics of environmental bacteria from an oxytetracycline production wastewater treatment plant and the receiving river
    • Li D, Yu T, Zhang Y, Yang M, et al. 2010. Antibiotic resistance characteristics of environmental bacteria from an oxytetracycline production wastewater treatment plant and the receiving river. Appl Environ Microbiol 76: 3444-51.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 3444-3451
    • Li, D.1    Yu, T.2    Zhang, Y.3    Yang, M.4
  • 53
    • 84864106081 scopus 로고    scopus 로고
    • Diversity of integron- and culture-associated antibiotic resistance genes in freshwater floc
    • Drudge CN, Elliott AV, Plach JM, Ejim LJ, et al. 2012. Diversity of integron- and culture-associated antibiotic resistance genes in freshwater floc. Appl Environ Microbiol 78: 4367-72.
    • (2012) Appl Environ Microbiol , vol.78 , pp. 4367-4372
    • Drudge, C.N.1    Elliott, A.V.2    Plach, J.M.3    Ejim, L.J.4
  • 54
    • 84864585711 scopus 로고    scopus 로고
    • Plasmid-mediated quinolone resistance. Interactions between human, animal, and environmental ecologies
    • Poirel L, Cattoir V, Nordmann P. 2012. Plasmid-mediated quinolone resistance. Interactions between human, animal, and environmental ecologies. Front Microbiol 3: 24.
    • (2012) Front Microbiol , vol.3 , pp. 24
    • Poirel, L.1    Cattoir, V.2    Nordmann, P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.