-
1
-
-
65349121788
-
Effects of radiotherapy with concomitant and adjuvant temozolomide versus radiotherapy alone on survival in glioblastoma in a randomised phase III study: 5-year analysis of the EORTC-NCIC trial
-
Stupp, R. et al. Effects of radiotherapy with concomitant and adjuvant temozolomide versus radiotherapy alone on survival in glioblastoma in a randomised phase III study: 5-year analysis of the EORTC-NCIC trial. Lancet Oncol. 10, 459-466 (2009).
-
(2009)
Lancet Oncol.
, vol.10
, pp. 459-466
-
-
Stupp, R.1
-
2
-
-
78651312134
-
Toolkit for evaluating genes required for proliferation and survival using tetracycline-regulated RNAi
-
Zuber, J. et al. Toolkit for evaluating genes required for proliferation and survival using tetracycline-regulated RNAi. Nat. Biotechnol. 29, 79-83 (2011).
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 79-83
-
-
Zuber, J.1
-
3
-
-
80055000824
-
RNAi screen identifies Brd4 as a therapeutic target in acute myeloid leukaemia
-
Zuber, J. et al. RNAi screen identifies Brd4 as a therapeutic target in acute myeloid leukaemia. Nature 478, 524-528 (2011).
-
(2011)
Nature
, vol.478
, pp. 524-528
-
-
Zuber, J.1
-
4
-
-
84890985901
-
An optimized microRNA backbone for effective single-copy RNAi
-
Fellmann, C. et al. An optimized microRNA backbone for effective single-copy RNAi. Cell Reports 5, 1704-1713 (2013).
-
(2013)
Cell Reports
, vol.5
, pp. 1704-1713
-
-
Fellmann, C.1
-
5
-
-
84863621527
-
Cancer epigenetics: From mechanism to therapy
-
Dawson, M. A. & Kouzarides, T. Cancer epigenetics: from mechanism to therapy. Cell 150, 12-27 (2012).
-
(2012)
Cell
, vol.150
, pp. 12-27
-
-
Dawson, M.A.1
Kouzarides, T.2
-
6
-
-
84886808679
-
Chromatin proteins and modifications as drug targets
-
Helin, K. & Dhanak, D. Chromatin proteins and modifications as drug targets. Nature 502, 480-488 (2013).
-
(2013)
Nature
, vol.502
, pp. 480-488
-
-
Helin, K.1
Dhanak, D.2
-
7
-
-
84923358817
-
Cell-of-origin chromatin organization shapes the mutational landscape of cancer
-
Polak, P. et al. Cell-of-origin chromatin organization shapes the mutational landscape of cancer. Nature 518, 360-364 (2015).
-
(2015)
Nature
, vol.518
, pp. 360-364
-
-
Polak, P.1
-
8
-
-
84929211885
-
Pioneer factors govern super-enhancer dynamics in stem cell plasticity and lineage choice
-
Adam, R. C. et al. Pioneer factors govern super-enhancer dynamics in stem cell plasticity and lineage choice. Nature 521, 366-370 (2015).
-
(2015)
Nature
, vol.521
, pp. 366-370
-
-
Adam, R.C.1
-
9
-
-
84908602740
-
NF-κ B directs dynamic super enhancer formation in inflammation and atherogenesis
-
Brown, J. D. et al. NF-κ B directs dynamic super enhancer formation in inflammation and atherogenesis. Mol. Cell 56, 219-231 (2014).
-
(2014)
Mol. Cell
, vol.56
, pp. 219-231
-
-
Brown, J.D.1
-
10
-
-
84875537133
-
Epigenetic reprogramming in cancer
-
Suvà, M. L., Riggi, N. & Bernstein, B. E. Epigenetic reprogramming in cancer. Science 339, 1567-1570 (2013).
-
(2013)
Science
, vol.339
, pp. 1567-1570
-
-
Suvà, M.L.1
Riggi, N.2
Bernstein, B.E.3
-
11
-
-
84860841594
-
Epigenomic enhancer profiling defines a signature of colon cancer
-
Akhtar-Zaidi, B. et al. Epigenomic enhancer profiling defines a signature of colon cancer. Science 336, 736-739 (2012).
-
(2012)
Science
, vol.336
, pp. 736-739
-
-
Akhtar-Zaidi, B.1
-
12
-
-
84894579192
-
Brd4 and JMJD6-associated anti-pause enhancers in regulation of transcriptional pause release
-
Liu, W. et al. Brd4 and JMJD6-associated anti-pause enhancers in regulation of transcriptional pause release. Cell 155, 1581-1595 (2013).
-
(2013)
Cell
, vol.155
, pp. 1581-1595
-
-
Liu, W.1
-
13
-
-
84923780299
-
Getting up to speed with transcription elongation by RNA polymerase II
-
Jonkers, I. & Lis, J. T. Getting up to speed with transcription elongation by RNA polymerase II. Nat. Rev. Mol. Cell Biol. 16, 167-177 (2015).
-
(2015)
Nat. Rev. Mol. Cell Biol.
, vol.16
, pp. 167-177
-
-
Jonkers, I.1
Lis, J.T.2
-
14
-
-
84903595328
-
H2B ubiquitylation promotes RNA Pol II processivity via PAF1 and pTEFb
-
Wu, L., Li, L., Zhou, B., Qin, Z. & Dou, Y. H2B ubiquitylation promotes RNA Pol II processivity via PAF1 and pTEFb. Mol. Cell 54, 920-931 (2014).
-
(2014)
Mol. Cell
, vol.54
, pp. 920-931
-
-
Wu, L.1
Li, L.2
Zhou, B.3
Qin, Z.4
Dou, Y.5
-
15
-
-
33646358694
-
Tumor stem cells derived from glioblastomas cultured in bFGF and EGF more closely mirror the phenotype and genotype of primary tumors than do serum-cultured cell lines
-
Lee, J. et al. Tumor stem cells derived from glioblastomas cultured in bFGF and EGF more closely mirror the phenotype and genotype of primary tumors than do serum-cultured cell lines. Cancer Cell 9, 391-403 (2006).
-
(2006)
Cancer Cell
, vol.9
, pp. 391-403
-
-
Lee, J.1
-
16
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian, A. et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl Acad. Sci. USA 102, 15545-15550 (2005).
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
-
17
-
-
78649775562
-
Enrichment Map: A network-based method for gene-set enrichment visualization and interpretation
-
Merico, D., Isserlin, R., Stueker, O., Emili, A. & Bader, G. D. Enrichment Map: a network-based method for gene-set enrichment visualization and interpretation. PLoS One 5, e13984 (2010).
-
(2010)
PLoS One
, vol.5
, pp. e13984
-
-
Merico, D.1
Isserlin, R.2
Stueker, O.3
Emili, A.4
Bader, G.D.5
-
18
-
-
84928214306
-
Pausing of RNA polymerase II regulates mammalian developmental potential through control of signaling networks
-
Williams, L. H. et al. Pausing of RNA polymerase II regulates mammalian developmental potential through control of signaling networks. Mol. Cell 58, 311-322 (2015).
-
(2015)
Mol. Cell
, vol.58
, pp. 311-322
-
-
Williams, L.H.1
-
19
-
-
84871699564
-
Promoter-proximal pausing of RNA polymerase II: Emerging roles in metazoans
-
Adelman, K. & Lis, J. T. Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans. Nat. Rev. Genet. 13, 720-731 (2012).
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 720-731
-
-
Adelman, K.1
Lis, J.T.2
-
20
-
-
84860504575
-
Regulating the regulators: The pervasive effects of Pol II pausing on stimulus-responsive gene networks
-
Gilchrist, D. A. et al. Regulating the regulators: the pervasive effects of Pol II pausing on stimulus-responsive gene networks. Genes Dev. 26, 933-944 (2012).
-
(2012)
Genes Dev.
, vol.26
, pp. 933-944
-
-
Gilchrist, D.A.1
-
21
-
-
84878831596
-
HIF1A employs CDK8-mediator to stimulate RNAPII elongation in response to hypoxia
-
Galbraith, M. D. et al. HIF1A employs CDK8-mediator to stimulate RNAPII elongation in response to hypoxia. Cell 153, 1327-1339 (2013).
-
(2013)
Cell
, vol.153
, pp. 1327-1339
-
-
Galbraith, M.D.1
-
22
-
-
36549061004
-
RNA polymerase is poised for activation across the genome
-
Muse, G. W. et al. RNA polymerase is poised for activation across the genome. Nat. Genet. 39, 1507-1511 (2007).
-
(2007)
Nat. Genet.
, vol.39
, pp. 1507-1511
-
-
Muse, G.W.1
-
23
-
-
84887207641
-
Acetylation of RNA polymerase II regulates growth-factorinduced gene transcription in mammalian cells
-
Schröder, S. et al. Acetylation of RNA polymerase II regulates growth-factorinduced gene transcription in mammalian cells. Mol. Cell 52, 314-324 (2013).
-
(2013)
Mol. Cell
, vol.52
, pp. 314-324
-
-
Schröder, S.1
-
24
-
-
85051672237
-
Data from ivy GAP
-
Shah, S., Feng, X., Lankerovich, M., Puchalski, R. B. & Keogh, B. Data from Ivy GAP. The Cancer Imaging Archive http://dx.doi.org/10.7937/K9/TCIA.2016. XLwaN6nL (2016).
-
(2016)
The Cancer Imaging Archive
-
-
Shah, S.1
Feng, X.2
Lankerovich, M.3
Puchalski, R.B.4
Keogh, B.5
-
25
-
-
77952367798
-
Widespread transcription at neuronal activity-regulated enhancers
-
Kim, T. K. et al. Widespread transcription at neuronal activity-regulated enhancers. Nature 465, 182-187 (2010).
-
(2010)
Nature
, vol.465
, pp. 182-187
-
-
Kim, T.K.1
-
26
-
-
58149521944
-
Highly parallel identification of essential genes in cancer cells
-
Luo, B. et al. Highly parallel identification of essential genes in cancer cells. Proc. Natl Acad. Sci. USA 105, 20380-20385 (2008).
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 20380-20385
-
-
Luo, B.1
-
27
-
-
33845317573
-
Glioma stem cells promote radioresistance by preferential activation of the DNA damage response
-
Bao, S. et al. Glioma stem cells promote radioresistance by preferential activation of the DNA damage response. Nature 444, 756-760 (2006).
-
(2006)
Nature
, vol.444
, pp. 756-760
-
-
Bao, S.1
-
28
-
-
77955801615
-
Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
-
Goecks, J., Nekrutenko, A., Taylor, J. & The Galaxy Team. Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol. 11, R86 (2010).
-
(2010)
Genome Biol.
, vol.11
, pp. R86
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
-
29
-
-
79959923522
-
G:Profiler - A web server for functional interpretation of gene lists (2011 update)
-
Reimand, J., Arak, T. & Vilo, J. g:Profiler - a web server for functional interpretation of gene lists (2011 update). Nucleic Acids Res. 39, W307-W315(2011).
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. W307-W315
-
-
Reimand, J.1
Arak, T.2
Vilo, J.3
-
30
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell, C., Pachter, L. & Salzberg, S. L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
31
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell, C. et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28, 511-515 (2010).
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
-
32
-
-
84899524502
-
Reconstructing and reprogramming the tumor-propagating potential of glioblastoma stem-like cells
-
Suvà, M. L. et al. Reconstructing and reprogramming the tumor-propagating potential of glioblastoma stem-like cells. Cell 157, 580-594 (2014).
-
(2014)
Cell
, vol.157
, pp. 580-594
-
-
Suvà, M.L.1
-
33
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
34
-
-
77952567987
-
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
-
Heinz, S. et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell 38, 576-589 (2010).
-
(2010)
Mol. Cell
, vol.38
, pp. 576-589
-
-
Heinz, S.1
-
35
-
-
80052022462
-
Cistrome: An integrative platform for transcriptional regulation studies
-
Liu, T. et al. Cistrome: an integrative platform for transcriptional regulation studies. Genome Biol. 12, R83 (2011).
-
(2011)
Genome Biol.
, vol.12
, pp. R83
-
-
Liu, T.1
-
36
-
-
84916595976
-
Lgr5 marks post-mitotic, lineage restricted cerebellar granule neurons during postnatal development
-
Miller, T. E. et al. Lgr5 marks post-mitotic, lineage restricted cerebellar granule neurons during postnatal development. PLoS One 9, e114433 (2014).
-
(2014)
PLoS One
, vol.9
, pp. e114433
-
-
Miller, T.E.1
-
37
-
-
84896721277
-
Autophagy and oxidative stress in gliomas with IDH1 mutations
-
Gilbert, M. R. et al. Autophagy and oxidative stress in gliomas with IDH1 mutations. Acta Neuropathol. 127, 221-233 (2014).
-
(2014)
Acta Neuropathol.
, vol.127
, pp. 221-233
-
-
Gilbert, M.R.1
-
38
-
-
84962162280
-
TCGA2STAT: Simple TCGA data access for integrated statistical analysis in R
-
Wan, Y. W., Allen, G. I. & Liu, Z. TCGA2STAT: simple TCGA data access for integrated statistical analysis in R. Bioinformatics 32, 952-954 (2016).
-
(2016)
Bioinformatics
, vol.32
, pp. 952-954
-
-
Wan, Y.W.1
Allen, G.I.2
Liu, Z.3
-
39
-
-
70449091786
-
Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1
-
Barbie, D. A. et al. Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1. Nature 462, 108-112 (2009).
-
(2009)
Nature
, vol.462
, pp. 108-112
-
-
Barbie, D.A.1
|