메뉴 건너뛰기




Volumn 66, Issue 3, 2017, Pages 794-808

A liver-specific long noncoding RNA with a role in cell viability is elevated in human nonalcoholic steatohepatitis

Author keywords

[No Author keywords available]

Indexed keywords

LONG UNTRANSLATED RNA;

EID: 85025096471     PISSN: 02709139     EISSN: 15273350     Source Type: Journal    
DOI: 10.1002/hep.29034     Document Type: Article
Times cited : (81)

References (48)
  • 2
    • 0042165989 scopus 로고    scopus 로고
    • Hepatocyte apoptosis and Fas expression are prominent features of human nonalcoholic steatohepatitis
    • Feldstein AE, Canbay A, Angulo P, Taniai M, Burgart LJ, Lindor KD, et al. Hepatocyte apoptosis and Fas expression are prominent features of human nonalcoholic steatohepatitis. Gastroenterology 2003;125:437-443.
    • (2003) Gastroenterology , vol.125 , pp. 437-443
    • Feldstein, A.E.1    Canbay, A.2    Angulo, P.3    Taniai, M.4    Burgart, L.J.5    Lindor, K.D.6
  • 4
    • 84906774778 scopus 로고    scopus 로고
    • Lifestyle interventions for the treatment of non-alcoholic fatty liver disease
    • Bradford V, Dillon J, Miller M. Lifestyle interventions for the treatment of non-alcoholic fatty liver disease. Hepat Med 2013;6:1-10.
    • (2013) Hepat Med , vol.6 , pp. 1-10
    • Bradford, V.1    Dillon, J.2    Miller, M.3
  • 5
    • 0038461088 scopus 로고    scopus 로고
    • Hepatic gene expression in histologically progressive nonalcoholic steatohepatitis
    • Sreekumar R, Rosado B, Rasmussen D, Charlton M. Hepatic gene expression in histologically progressive nonalcoholic steatohepatitis. Hepatology 2003;38:244-251.
    • (2003) Hepatology , vol.38 , pp. 244-251
    • Sreekumar, R.1    Rosado, B.2    Rasmussen, D.3    Charlton, M.4
  • 6
    • 22844439963 scopus 로고    scopus 로고
    • Hepatic gene expression in patients with obesity-related non-alcoholic steatohepatitis
    • Younossi ZM, Gorreta F, Ong JP, Schlauch K, Del Giacco L, Elariny H, et al. Hepatic gene expression in patients with obesity-related non-alcoholic steatohepatitis. Liver Int 2005;25:760-771.
    • (2005) Liver Int , vol.25 , pp. 760-771
    • Younossi, Z.M.1    Gorreta, F.2    Ong, J.P.3    Schlauch, K.4    Del Giacco, L.5    Elariny, H.6
  • 7
    • 84927943362 scopus 로고    scopus 로고
    • Determining the association between adipokine expression in multiple tissues and phenotypic features of non-alcoholic fatty liver disease in obesity
    • Wolfs MGM, Gruben N, Rensen SS, Verdam FJ, Greve JW, Driessen A, et al. Determining the association between adipokine expression in multiple tissues and phenotypic features of non-alcoholic fatty liver disease in obesity. Nutr Diabetes 2015;5:e146.
    • (2015) Nutr Diabetes , vol.5
    • Wolfs, M.G.M.1    Gruben, N.2    Rensen, S.S.3    Verdam, F.J.4    Greve, J.W.5    Driessen, A.6
  • 9
    • 84865727393 scopus 로고    scopus 로고
    • The GENCODE v7 catalogue of human long non-coding RNAs: analysis of their structure, evolution and expression
    • Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilhner H, et al. The GENCODE v7 catalogue of human long non-coding RNAs: analysis of their structure, evolution and expression. Genome Res 2012;22:1775-1789.
    • (2012) Genome Res , vol.22 , pp. 1775-1789
    • Derrien, T.1    Johnson, R.2    Bussotti, G.3    Tanzer, A.4    Djebali, S.5    Tilhner, H.6
  • 10
    • 84903817064 scopus 로고    scopus 로고
    • The ways of action of long non-coding RNAs in cytoplasm and nucleus
    • Zhang K, Shi ZM, Chang YN, Hu ZM, Qi HX, Hong W. The ways of action of long non-coding RNAs in cytoplasm and nucleus. Gene 2014;547:1-9.
    • (2014) Gene , vol.547 , pp. 1-9
    • Zhang, K.1    Shi, Z.M.2    Chang, Y.N.3    Hu, Z.M.4    Qi, H.X.5    Hong, W.6
  • 12
    • 84924411357 scopus 로고    scopus 로고
    • A liver-enriched long non-coding RNA, lncLSTR, regulates systemic lipid metabolism in mice
    • Li P, Ruan X, Yang L, Kiesewetter K, Zhao Y, Luo H, et al. A liver-enriched long non-coding RNA, lncLSTR, regulates systemic lipid metabolism in mice. Cell Metab 2015;21:455-467.
    • (2015) Cell Metab , vol.21 , pp. 455-467
    • Li, P.1    Ruan, X.2    Yang, L.3    Kiesewetter, K.4    Zhao, Y.5    Luo, H.6
  • 14
    • 81855183267 scopus 로고    scopus 로고
    • microRNA-29 can regulate expression of the long non-coding RNA gene MEG3 in hepatocellular cancer
    • Braconi C, Kogure T, Valeri N, Huang N, Nuovo G, Costinean S, et al. microRNA-29 can regulate expression of the long non-coding RNA gene MEG3 in hepatocellular cancer. Oncogene 2011;30:4750-4756.
    • (2011) Oncogene , vol.30 , pp. 4750-4756
    • Braconi, C.1    Kogure, T.2    Valeri, N.3    Huang, N.4    Nuovo, G.5    Costinean, S.6
  • 15
    • 84872825450 scopus 로고    scopus 로고
    • Long non-coding RNA MALAT-1 overexpression predicts tumor recurrence of hepatocellular carcinoma after liver transplantation
    • Lai M, Yang Z, Zhou L, Zhu QQ, Xie HY, Zhang F, et al. Long non-coding RNA MALAT-1 overexpression predicts tumor recurrence of hepatocellular carcinoma after liver transplantation. Med Oncol 2012;29:1810-1816.
    • (2012) Med Oncol , vol.29 , pp. 1810-1816
    • Lai, M.1    Yang, Z.2    Zhou, L.3    Zhu, Q.Q.4    Xie, H.Y.5    Zhang, F.6
  • 16
    • 84954318241 scopus 로고    scopus 로고
    • Genome-wide analysis of long noncoding RNA expression profiles in patients with non-alcoholic fatty liver disease
    • Sun C, Liu X, Yi Z, Xiao X, Yang M, Hu G, et al. Genome-wide analysis of long noncoding RNA expression profiles in patients with non-alcoholic fatty liver disease. IUBMB Life 2015;67:847-852.
    • (2015) IUBMB Life , vol.67 , pp. 847-852
    • Sun, C.1    Liu, X.2    Yi, Z.3    Xiao, X.4    Yang, M.5    Hu, G.6
  • 17
    • 85048814308 scopus 로고    scopus 로고
    • Circulating microRNAs as potential biomarkers in non-alcoholic fatty liver disease and hepatocellular carcinoma
    • Afonso MB, Rodrigues PM, Simão AL, Castro RE. Circulating microRNAs as potential biomarkers in non-alcoholic fatty liver disease and hepatocellular carcinoma. J Clin Med 2016;5(3).
    • (2016) J Clin Med , vol.5 , Issue.3
    • Afonso, M.B.1    Rodrigues, P.M.2    Simão, A.L.3    Castro, R.E.4
  • 19
    • 20044374023 scopus 로고    scopus 로고
    • Design and validation of a histological scoring system for nonalcoholic fatty liver disease
    • Kleiner DE, Brunt EM, Van Natta M, Behling C, Contos MJ, Cummings OW, et al. Design and validation of a histological scoring system for nonalcoholic fatty liver disease. Hepatology 2005;41:1313-1321.
    • (2005) Hepatology , vol.41 , pp. 1313-1321
    • Kleiner, D.E.1    Brunt, E.M.2    Van Natta, M.3    Behling, C.4    Contos, M.J.5    Cummings, O.W.6
  • 20
    • 84857487802 scopus 로고    scopus 로고
    • Unraveling the regulatory mechanisms underlying tissue-dependent genetic variation of gene expression
    • Fu J, Wolfs MGM, Deelen P, Westra HJ, Fehrmann RS, Te Meerman GJ, et al. Unraveling the regulatory mechanisms underlying tissue-dependent genetic variation of gene expression. PLoS Genet 2012;8:e1002431.
    • (2012) PLoS Genet , vol.8
    • Fu, J.1    Wolfs, M.G.M.2    Deelen, P.3    Westra, H.J.4    Fehrmann, R.S.5    Te Meerman, G.J.6
  • 21
    • 84867366175 scopus 로고    scopus 로고
    • Gene expression profiling unravels cancer-related hepatic molecular signatures in steatohepatitis but not in steatosis
    • Starmann J, Fälth M, Spindelböck W, Lanz KL, Lackner C, Zatloukal K, et al. Gene expression profiling unravels cancer-related hepatic molecular signatures in steatohepatitis but not in steatosis. PLoS One 2012;7:e46584.
    • (2012) PLoS One , vol.7
    • Starmann, J.1    Fälth, M.2    Spindelböck, W.3    Lanz, K.L.4    Lackner, C.5    Zatloukal, K.6
  • 22
    • 84878692521 scopus 로고    scopus 로고
    • Plasma HULC as a promising novel biomarker for the detection of hepatocellular carcinoma
    • Xie H, Ma H, Zhou D. Plasma HULC as a promising novel biomarker for the detection of hepatocellular carcinoma. Biomed Res Int 2013;2013:136106.
    • (2013) Biomed Res Int , vol.2013 , pp. 136106
    • Xie, H.1    Ma, H.2    Zhou, D.3
  • 23
    • 84928890384 scopus 로고    scopus 로고
    • Calling genotypes from public RNA-sequencing data enables identification of genetic variants that affect gene-expression levels
    • Deelen P, Zhernakova D, de Haan M, van der Sijde M, Bonder MJ, Karjalainen J, et al. Calling genotypes from public RNA-sequencing data enables identification of genetic variants that affect gene-expression levels. Genome Med 2015;7:30.
    • (2015) Genome Med , vol.7 , pp. 30
    • Deelen, P.1    Zhernakova, D.2    de Haan, M.3    van der Sijde, M.4    Bonder, M.J.5    Karjalainen, J.6
  • 24
    • 75249087100 scopus 로고    scopus 로고
    • edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson MD, McCarthy DJ, Smyth GK. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 2010;26:139-140.
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 26
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B 1995;57:289-300.
    • (1995) J R Stat Soc Ser B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 27
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang DW, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 2009;4:44-57.
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 28
    • 33646033137 scopus 로고    scopus 로고
    • A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen
    • Moffat J, Grueneberg DA, Yang X, Kim SY, Kloepfer AM, Hinkle G, et al. A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen. Cell 2006;124:1283-1298.
    • (2006) Cell , vol.124 , pp. 1283-1298
    • Moffat, J.1    Grueneberg, D.A.2    Yang, X.3    Kim, S.Y.4    Kloepfer, A.M.5    Hinkle, G.6
  • 29
    • 33645771481 scopus 로고    scopus 로고
    • Superoxide anions and hydrogen peroxide induce hepatocyte death by different mechanisms: involvement of JNK and ERK MAP kinases
    • Conde de la Rosa L, Schoemaker MH, Vrenken TE, Buist-Homan M, Havinga R, Jansen PL, et al. Superoxide anions and hydrogen peroxide induce hepatocyte death by different mechanisms: involvement of JNK and ERK MAP kinases. J Hepatol 2006;44:918-929.
    • (2006) J Hepatol , vol.44 , pp. 918-929
    • Conde de la Rosa, L.1    Schoemaker, M.H.2    Vrenken, T.E.3    Buist-Homan, M.4    Havinga, R.5    Jansen, P.L.6
  • 32
    • 84924629414 scopus 로고    scopus 로고
    • Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
    • Love MI, Huber W, Anders S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol 2014;15:1-34.
    • (2014) Genome Biol , vol.15 , pp. 1-34
    • Love, M.I.1    Huber, W.2    Anders, S.3
  • 33
    • 80052978224 scopus 로고    scopus 로고
    • Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    • Cabili M, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, et al. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev 2011;25:1915-1927.
    • (2011) Genes Dev , vol.25 , pp. 1915-1927
    • Cabili, M.1    Trapnell, C.2    Goff, L.3    Koziol, M.4    Tazon-Vega, B.5    Regev, A.6
  • 34
    • 34547582418 scopus 로고    scopus 로고
    • CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine
    • Kong L, Zhang Y, Ye ZQ, Liu XQ, Zhao SQ, Wei L, et al. CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine. Nucleic Acids Res 2007;35(Web Server issue 2):W345-W349.
    • (2007) Nucleic Acids Res , vol.35 , Issue.Web Server issue 2 , pp. W345-W349
    • Kong, L.1    Zhang, Y.2    Ye, Z.Q.3    Liu, X.Q.4    Zhao, S.Q.5    Wei, L.6
  • 35
    • 84876020023 scopus 로고    scopus 로고
    • CPAT: coding-potential assessment tool using an alignment-free logistic regression model
    • Wang L, Park HJ, Dasari S, Wang S, Kocher JP, Li W. CPAT: coding-potential assessment tool using an alignment-free logistic regression model. Nucleic Acids Res 2013;41:e74.
    • (2013) Nucleic Acids Res , vol.41
    • Wang, L.1    Park, H.J.2    Dasari, S.3    Wang, S.4    Kocher, J.P.5    Li, W.6
  • 36
    • 84870997845 scopus 로고    scopus 로고
    • Suppressor of cytokine signaling 6 (SOCS6) promotes mitochondrial fission via regulating DRP1 translocation
    • Lin HY, Lai RH, Lin ST, Lin RC, Wang MJ, Lin CC, et al. Suppressor of cytokine signaling 6 (SOCS6) promotes mitochondrial fission via regulating DRP1 translocation. Cell Death Differ 2012;20:139-153.
    • (2012) Cell Death Differ , vol.20 , pp. 139-153
    • Lin, H.Y.1    Lai, R.H.2    Lin, S.T.3    Lin, R.C.4    Wang, M.J.5    Lin, C.C.6
  • 37
    • 84887101163 scopus 로고    scopus 로고
    • MicroRNAs and other non-coding RNAs as targets for anticancer drug development
    • Ling H, Fabbri M, Calin G. MicroRNAs and other non-coding RNAs as targets for anticancer drug development. Nat Rev Drug Discov 2013;12:847-865.
    • (2013) Nat Rev Drug Discov , vol.12 , pp. 847-865
    • Ling, H.1    Fabbri, M.2    Calin, G.3
  • 38
    • 84943643207 scopus 로고    scopus 로고
    • Long noncoding RNAs in development and cancer: potential biomarkers and therapeutic targets
    • Fatima R, Akhade VS, Pal D, Rao SM. Long noncoding RNAs in development and cancer: potential biomarkers and therapeutic targets. Mol Cell Ther 2015;3:5.
    • (2015) Mol Cell Ther , vol.3 , pp. 5
    • Fatima, R.1    Akhade, V.S.2    Pal, D.3    Rao, S.M.4
  • 39
    • 84871445502 scopus 로고    scopus 로고
    • Neutrophil-derived myeloperoxidase aggravates non-alcoholic steatohepatitis in low-density lipoprotein receptor-deficient mice
    • Rensen SS, Bieghs V, Xanthoulea S, Arfianti E, Bakker JA, Shiri-Sverdlov R, et al. Neutrophil-derived myeloperoxidase aggravates non-alcoholic steatohepatitis in low-density lipoprotein receptor-deficient mice. PLoS One 2012;7:e52411.
    • (2012) PLoS One , vol.7
    • Rensen, S.S.1    Bieghs, V.2    Xanthoulea, S.3    Arfianti, E.4    Bakker, J.A.5    Shiri-Sverdlov, R.6
  • 40
    • 71149086343 scopus 로고    scopus 로고
    • Increased hepatic myeloperoxidase activity in obese subjects with nonalcoholic steatohepatitis
    • Rensen SS, Slaats Y, Nijhuis J, Jans A, Bieghs S, Driessen A, et al. Increased hepatic myeloperoxidase activity in obese subjects with nonalcoholic steatohepatitis. Am J Pathol 2009;175:1473-1482.
    • (2009) Am J Pathol , vol.175 , pp. 1473-1482
    • Rensen, S.S.1    Slaats, Y.2    Nijhuis, J.3    Jans, A.4    Bieghs, S.5    Driessen, A.6
  • 41
    • 84869088820 scopus 로고    scopus 로고
    • Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat
    • Carrieri C, Cimatti L, Biagioli M, Beugnet A, Zucchelli S, Fedele S, et al. Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat. Nature 2012;491:454-457.
    • (2012) Nature , vol.491 , pp. 454-457
    • Carrieri, C.1    Cimatti, L.2    Biagioli, M.3    Beugnet, A.4    Zucchelli, S.5    Fedele, S.6
  • 42
    • 79951495822 scopus 로고    scopus 로고
    • lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3′ UTRs via Alu elements
    • Gong C, Maquat LE. lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3′ UTRs via Alu elements. Nature 2011;470:284-288.
    • (2011) Nature , vol.470 , pp. 284-288
    • Gong, C.1    Maquat, L.E.2
  • 43
    • 84870479616 scopus 로고    scopus 로고
    • Long non-coding RNA gadd7 interacts with TDP-43 and regulates Cdk6 mRNA decay
    • Liu X, Li D, Zhang W, Guo M, Zhan Q. Long non-coding RNA gadd7 interacts with TDP-43 and regulates Cdk6 mRNA decay. EMBO J 2012;31:4415-4427.
    • (2012) EMBO J , vol.31 , pp. 4415-4427
    • Liu, X.1    Li, D.2    Zhang, W.3    Guo, M.4    Zhan, Q.5
  • 44
    • 61949215188 scopus 로고    scopus 로고
    • Knockout of myeloid cell leukemia-1 induces liver damage and increases apoptosis susceptibility of murine hepatocytes
    • Vick B, Weber A, Urbanik T, Maass T, Teufel A, Krammer PH, et al. Knockout of myeloid cell leukemia-1 induces liver damage and increases apoptosis susceptibility of murine hepatocytes. Hepatology 2009;49:627-636.
    • (2009) Hepatology , vol.49 , pp. 627-636
    • Vick, B.1    Weber, A.2    Urbanik, T.3    Maass, T.4    Teufel, A.5    Krammer, P.H.6
  • 45
    • 5144232785 scopus 로고    scopus 로고
    • Hepatocyte-specific disruption of Bcl-xL leads to continuous hepatocyte apoptosis and liver fibrotic responses
    • Takehara T, Tatsumi T, Suzuki T, Rucker EB 3rd, Hennighausen L, Jinushi M, et al. Hepatocyte-specific disruption of Bcl-xL leads to continuous hepatocyte apoptosis and liver fibrotic responses. Gastroenterology 2004;127:1189-1197.
    • (2004) Gastroenterology , vol.127 , pp. 1189-1197
    • Takehara, T.1    Tatsumi, T.2    Suzuki, T.3    Rucker, E.B.4    Hennighausen, L.5    Jinushi, M.6
  • 46
    • 70350070333 scopus 로고    scopus 로고
    • Mcl-1 and Bcl-xL cooperatively maintain integrity of hepatocytes in developing and adult murine liver
    • Hikita H, Takehara T, Shimizu S, Kodama T, Li W, Miyagi T, et al. Mcl-1 and Bcl-xL cooperatively maintain integrity of hepatocytes in developing and adult murine liver. Hepatology 2009;50:1217-1226.
    • (2009) Hepatology , vol.50 , pp. 1217-1226
    • Hikita, H.1    Takehara, T.2    Shimizu, S.3    Kodama, T.4    Li, W.5    Miyagi, T.6
  • 47
    • 61849089907 scopus 로고    scopus 로고
    • Gene expression of anti- and pro-apoptotic proteins in malignant and normal plasma cells
    • Jourdan M, Reme T, Goldschmidt H, Fiol G, Pantesco V, De Vos J, et al. Gene expression of anti- and pro-apoptotic proteins in malignant and normal plasma cells. Br J Haematol 2009;145:45-58.
    • (2009) Br J Haematol , vol.145 , pp. 45-58
    • Jourdan, M.1    Reme, T.2    Goldschmidt, H.3    Fiol, G.4    Pantesco, V.5    De Vos, J.6
  • 48
    • 0036551274 scopus 로고    scopus 로고
    • Activation of hepatic stellate cells—a key issue in liver fibrosis
    • Reeves HL, Friedman SL. Activation of hepatic stellate cells—a key issue in liver fibrosis. Front Biosci 2002;7:d808-d826.
    • (2002) Front Biosci , vol.7 , pp. d808-d826
    • Reeves, H.L.1    Friedman, S.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.