-
1
-
-
0033569406
-
Molecular classification of cancer: class discovery and class prediction by gene expression monitoring
-
PMID:10521349
-
Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP, Coller H, Loh ML, Downing JR, Caligiuri MA, et al. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 1999; 286:531-7; PMID:10521349; http://dx.doi. org/10.1126/science.286.5439.531
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.P.6
Coller, H.7
Loh, M.L.8
Downing, J.R.9
Caligiuri, M.A.10
-
2
-
-
80052730617
-
Verification of systems biology research in the age of collaborative competition
-
PMID:21904331
-
Meyer P, Alexopoulos LG, Bonk T, Califano A, Cho CR, de la Fuente A, de Graaf D, Hartemink AJ, Hoeng J, Ivanov NV, et al. Verification of systems biology research in the age of collaborative competition. Nat Biotechnol 2011; 29:811-5; PMID:21904331; http://dx.doi.org/10.1038/nbt.1968
-
(2011)
Nat Biotechnol
, vol.29
, pp. 811-815
-
-
Meyer, P.1
Alexopoulos, L.G.2
Bonk, T.3
Califano, A.4
Cho, C.R.5
de la Fuente, A.6
de Graaf, D.7
Hartemink, A.J.8
Hoeng, J.9
Ivanov, N.V.10
-
3
-
-
84860475570
-
Industrial methodology for process verification in research (IMPROVER): toward systems biology verification
-
PMID:22423044
-
Meyer P, Hoeng J, Rice JJ, Norel R, Sprengel J, Stolle K, Bonk T, Corthesy S, Royyuru A, Peitsch MC, et al. Industrial methodology for process verification in research (IMPROVER): toward systems biology verification. Bioinformatics 2012; 28:1193-201; PMID:22423044; http://dx.doi.org/10.1093/bioinformatics/bts116
-
(2012)
Bioinformatics
, vol.28
, pp. 1193-1201
-
-
Meyer, P.1
Hoeng, J.2
Rice, J.J.3
Norel, R.4
Sprengel, J.5
Stolle, K.6
Bonk, T.7
Corthesy, S.8
Royyuru, A.9
Peitsch, M.C.10
-
4
-
-
0037076272
-
Diagnosis of multiple cancer types by shrunken centroids of gene expression
-
PMID:12011421
-
Tibshirani R, Hastie T, Narasimhan B, Chu G. Diagnosis of multiple cancer types by shrunken centroids of gene expression. Proc Natl Acad Sci U S A 2002; 99:6567-72; PMID:12011421; http://dx.doi.org/10.1073/pnas.082099299
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 6567-6572
-
-
Tibshirani, R.1
Hastie, T.2
Narasimhan, B.3
Chu, G.4
-
5
-
-
0036372855
-
New feature subset selection procedures for classification of expression profiles
-
RESEARCH0017
-
Bo T, Jonassen I. New feature subset selection procedures for classification of expression profiles. Genome Biol 2002; 3:RESEARCH0017; http://dx.doi. org/10.1186/gb-2002-3-4-research0017
-
(2002)
Genome Biol
, vol.3
-
-
Bo, T.1
Jonassen, I.2
-
6
-
-
12244265090
-
Gene selection: a Bayesian variable selection approach
-
PMID:12499298
-
Lee KE, Sha N, Dougherty ER, Vannucci M, Mallick BK. Gene selection: a Bayesian variable selection approach. Bioinformatics 2003; 19:90-7; PMID:12499298; http://dx.doi.org/10.1093/bioinformatics/19.1.90
-
(2003)
Bioinformatics
, vol.19
, pp. 90-97
-
-
Lee, K.E.1
Sha, N.2
Dougherty, E.R.3
Vannucci, M.4
Mallick, B.K.5
-
7
-
-
3342991601
-
Gene selection and classification from microarray data using kernel machine
-
PMID:15280023
-
Cho JH, Lee D, Park JH, Lee IB. Gene selection and classification from microarray data using kernel machine. FEBS Lett 2004; 571:93-8; PMID:15280023; http://dx.doi.org/10.1016/j. febslet.2004.05.087
-
(2004)
FEBS Lett
, vol.571
, pp. 93-98
-
-
Cho, J.H.1
Lee, D.2
Park, J.H.3
Lee, I.B.4
-
8
-
-
1542268315
-
Multi-class cancer subtype classification based on gene expression signatures with reliability analysis
-
PMID:15013775
-
Fu LM, Fu-Liu CS. Multi-class cancer subtype classification based on gene expression signatures with reliability analysis. FEBS Lett 2004; 561:186-90; PMID:15013775; http://dx.doi.org/10.1016/S0014-5793(04)00175-9
-
(2004)
FEBS Lett
, vol.561
, pp. 186-190
-
-
Fu, L.M.1
Fu-Liu, C.S.2
-
9
-
-
12444320350
-
Gene selection from microarray data for cancer classification--a machine learning approach
-
PMID:15680584
-
Wang Y, Tetko IV, Hall MA, Frank E, Facius A, Mayer KF, Mewes HW. Gene selection from microarray data for cancer classification--a machine learning approach. Comput Biol Chem 2005; 29:37-46; PMID:15680584; http://dx.doi.org/10.1016/j. compbiolchem.2004.11.001
-
(2005)
Comput Biol Chem
, vol.29
, pp. 37-46
-
-
Wang, Y.1
Tetko, I.V.2
Hall, M.A.3
Frank, E.4
Facius, A.5
Mayer, K.F.6
Mewes, H.W.7
-
10
-
-
29344454268
-
Tumor beta-1,4-galactosyltransferase IV overexpression is closely associated with colorectal cancer metastasis and poor prognosis
-
PMID:16361545
-
Chen WS, Chang HY, Li CP, Liu JM, Huang TS. Tumor beta-1,4-galactosyltransferase IV overexpression is closely associated with colorectal cancer metastasis and poor prognosis. Clin Cancer Res 2005; 11:8615-22; PMID:16361545; http://dx.doi.org/10.1158/1078-0432.CCR-05-1006
-
(2005)
Clin Cancer Res
, vol.11
, pp. 8615-8622
-
-
Chen, W.S.1
Chang, H.Y.2
Li, C.P.3
Liu, J.M.4
Huang, T.S.5
-
11
-
-
33751193656
-
Converting a breast cancer microarray signature into a highthroughput diagnostic test
-
PMID:17074082
-
Glas AM, Floore A, Delahaye LJ, Witteveen AT, Pover RC, Bakx N, Lahti-Domenici JS, Bruinsma TJ, Warmoes MO, Bernards R, et al. Converting a breast cancer microarray signature into a highthroughput diagnostic test. BMC Genomics 2006; 7:278; PMID:17074082; http://dx.doi. org/10.1186/1471-2164-7-278
-
(2006)
BMC Genomics
, vol.7
, pp. 278
-
-
Glas, A.M.1
Floore, A.2
Delahaye, L.J.3
Witteveen, A.T.4
Pover, R.C.5
Bakx, N.6
Lahti-Domenici, J.S.7
Bruinsma, T.J.8
Warmoes, M.O.9
Bernards, R.10
-
12
-
-
77951637777
-
Prediction of risk of distant recurrence using the 21-gene recurrence score in node-negative and node-positive postmenopausal patients with breast cancer treated with anastrozole or tamoxifen: a TransATAC study
-
PMID:20212256
-
Dowsett M, Cuzick J, Wale C, Forbes J, Mallon EA, Salter J, Quinn E, Dunbier A, Baum M, Buzdar A, et al. Prediction of risk of distant recurrence using the 21-gene recurrence score in node-negative and node-positive postmenopausal patients with breast cancer treated with anastrozole or tamoxifen: a TransATAC study. J Clin Oncol 2010; 28:1829-34; PMID:20212256; http://dx.doi.org/10.1200/JCO.2009.24.4798
-
(2010)
J Clin Oncol
, vol.28
, pp. 1829-1834
-
-
Dowsett, M.1
Cuzick, J.2
Wale, C.3
Forbes, J.4
Mallon, E.A.5
Salter, J.6
Quinn, E.7
Dunbier, A.8
Baum, M.9
Buzdar, A.10
-
13
-
-
79960819723
-
Identification of human housekeeping genes and tissue-selective genes by microarray meta-analysis
-
PMID:21818400
-
Chang CW, Cheng WC, Chen CR, Shu WY, Tsai ML, Huang CL, Hsu IC. Identification of human housekeeping genes and tissue-selective genes by microarray meta-analysis. PLoS One 2011; 6:e22859; PMID:21818400; http://dx.doi.org/10.1371/journal. pone.0022859
-
(2011)
PLoS One
, vol.6
-
-
Chang, C.W.1
Cheng, W.C.2
Chen, C.R.3
Shu, W.Y.4
Tsai, M.L.5
Huang, C.L.6
Hsu, I.C.7
-
14
-
-
79959361260
-
Global gene expression analysis reveals evidence for decreased lipid biosynthesis and increased innate immunity in uninvolved psoriatic skin
-
PMID:19571819
-
Gudjonsson JE, Ding J, Li X, Nair RP, Tejasvi T, Qin ZS, Ghosh D, Aphale A, Gumucio DL, Voorhees JJ, et al. Global gene expression analysis reveals evidence for decreased lipid biosynthesis and increased innate immunity in uninvolved psoriatic skin. J Invest Dermatol 2009; 129:2795-804; PMID:19571819; http://dx.doi.org/10.1038/jid.2009.173
-
(2009)
J Invest Dermatol
, vol.129
, pp. 2795-2804
-
-
Gudjonsson, J.E.1
Ding, J.2
Li, X.3
Nair, R.P.4
Tejasvi, T.5
Qin, Z.S.6
Ghosh, D.7
Aphale, A.8
Gumucio, D.L.9
Voorhees, J.J.10
-
15
-
-
77949436490
-
Personalized medicine in psoriasis: developing a genomic classifier to predict histological response to Alefacept
-
PMID:20152045
-
Suárez-Fariñas M, Shah KR, Haider AS, Krueger JG, Lowes MA. Personalized medicine in psoriasis: developing a genomic classifier to predict histological response to Alefacept. BMC Dermatol 2010; 10:1; PMID:20152045; http://dx.doi. org/10.1186/1471-5945-10-1
-
(2010)
BMC Dermatol
, vol.10
, pp. 1
-
-
Suárez-Fariñas, M.1
Shah, K.R.2
Haider, A.S.3
Krueger, J.G.4
Lowes, M.A.5
-
16
-
-
37549033125
-
Psoriasis is associated with increased beta-defensin genomic copy number
-
PMID:18059266
-
Hollox EJ, Huffmeier U, Zeeuwen PL, Palla R, Lascorz J, Rodijk-Olthuis D, van de Kerkhof PC, Traupe H, de Jongh G, den Heijer M, et al. Psoriasis is associated with increased beta-defensin genomic copy number. Nat Genet 2008; 40:23-5; PMID:18059266; http://dx.doi.org/10.1038/ng.2007.48
-
(2008)
Nat Genet
, vol.40
, pp. 23-25
-
-
Hollox, E.J.1
Huffmeier, U.2
Zeeuwen, P.L.3
Palla, R.4
Lascorz, J.5
Rodijk-Olthuis, D.6
van de Kerkhof, P.C.7
Traupe, H.8
de Jongh, G.9
den Heijer, M.10
-
17
-
-
62749127946
-
Beta-defensin-2 protein is a serum biomarker for disease activity in psoriasis and reaches biologically relevant concentrations in lesional skin
-
PMID:19266104
-
Jansen PA, Rodijk-Olthuis D, Hollox EJ, Kamsteeg M, Tjabringa GS, de Jongh GJ, van Vlijmen-Willems IM, Bergboer JG, van Rossum MM, de Jong EM, et al. Beta-defensin-2 protein is a serum biomarker for disease activity in psoriasis and reaches biologically relevant concentrations in lesional skin. PLoS One 2009; 4:e4725; PMID:19266104; http://dx.doi. org/10.1371/journal.pone.0004725
-
(2009)
PLoS One
, vol.4
-
-
Jansen, P.A.1
Rodijk-Olthuis, D.2
Hollox, E.J.3
Kamsteeg, M.4
Tjabringa, G.S.5
de Jongh, G.J.6
van Vlijmen-Willems, I.M.7
Bergboer, J.G.8
van Rossum, M.M.9
de Jong, E.M.10
-
18
-
-
33749146775
-
Exposure of the promonocytic cell line THP-1 to Escherichia coli induces IFN-gamma-inducible lysosomal thiol reductase expression by inflammatory cytokines
-
PMID:16982925
-
Lackman RL, Cresswell P. Exposure of the promonocytic cell line THP-1 to Escherichia coli induces IFN-gamma-inducible lysosomal thiol reductase expression by inflammatory cytokines. J Immunol 2006; 177:4833-40; PMID:16982925
-
(2006)
J Immunol
, vol.177
, pp. 4833-4840
-
-
Lackman, R.L.1
Cresswell, P.2
-
19
-
-
38749097018
-
NLRX1 is a regulator of mitochondrial antiviral immunity
-
PMID:18200010
-
Moore CB, Bergstralh DT, Duncan JA, Lei Y, Morrison TE, Zimmermann AG, Accavitti-Loper MA, Madden VJ, Sun L, Ye Z, et al. NLRX1 is a regulator of mitochondrial antiviral immunity. Nature 2008; 451:573-7; PMID:18200010; http://dx.doi.org/10.1038/nature06501
-
(2008)
Nature
, vol.451
, pp. 573-577
-
-
Moore, C.B.1
Bergstralh, D.T.2
Duncan, J.A.3
Lei, Y.4
Morrison, T.E.5
Zimmermann, A.G.6
Accavitti-Loper, M.A.7
Madden, V.J.8
Sun, L.9
Ye, Z.10
-
20
-
-
50549092820
-
Type I interferon: potential therapeutic target for psoriasis?
-
PMID:18648529
-
Yao Y, Richman L, Morehouse C, de los Reyes M, Higgs BW, Boutrin A, White B, Coyle A, Krueger J, Kiener PA, et al. Type I interferon: potential therapeutic target for psoriasis? PLoS One 2008; 3:e2737; PMID:18648529; http://dx.doi. org/10.1371/journal.pone.0002737
-
(2008)
PLoS One
, vol.3
-
-
Yao, Y.1
Richman, L.2
Morehouse, C.3
de los Reyes, M.4
Higgs, B.W.5
Boutrin, A.6
White, B.7
Coyle, A.8
Krueger, J.9
Kiener, P.A.10
-
21
-
-
63149121152
-
Circulating microRNAs, potential biomarkers for drug-induced liver injury
-
PMID:19246379
-
Wang K, Zhang S, Marzolf B, Troisch P, Brightman A, Hu Z, Hood LE, Galas DJ. Circulating microRNAs, potential biomarkers for drug-induced liver injury. Proc Natl Acad Sci U S A 2009; 106:4402-7; PMID:19246379; http://dx.doi.org/10.1073/pnas.0813371106
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 4402-4407
-
-
Wang, K.1
Zhang, S.2
Marzolf, B.3
Troisch, P.4
Brightman, A.5
Hu, Z.6
Hood, L.E.7
Galas, D.J.8
-
22
-
-
82755187564
-
Extracellular microRNA: a new source of biomarkers
-
PMID:21402084
-
Etheridge A, Lee I, Hood L, Galas D, Wang K. Extracellular microRNA: a new source of biomarkers. Mutat Res 2011; 717:85-90; PMID:21402084; http://dx.doi.org/10.1016/j.mrfmmm.2011.03.004
-
(2011)
Mutat Res
, vol.717
, pp. 85-90
-
-
Etheridge, A.1
Lee, I.2
Hood, L.3
Galas, D.4
Wang, K.5
-
23
-
-
79955582317
-
MicroRNA as biomarkers and regulators in B-cell chronic lymphocytic leukemia
-
PMID:21460253
-
Moussay E, Wang K, Cho JH, van Moer K, Pierson S, Paggetti J, Nazarov PV, Palissot V, Hood LE, Berchem G, et al. MicroRNA as biomarkers and regulators in B-cell chronic lymphocytic leukemia. Proc Natl Acad Sci U S A 2011; 108:6573-8; PMID:21460253; http://dx.doi.org/10.1073/pnas.1019557108
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 6573-6578
-
-
Moussay, E.1
Wang, K.2
Cho, J.H.3
van Moer, K.4
Pierson, S.5
Paggetti, J.6
Nazarov, P.V.7
Palissot, V.8
Hood, L.E.9
Berchem, G.10
-
24
-
-
1342288026
-
affy--analysis of Affymetrix GeneChip data at the probe level
-
PMID:14960456
-
Gautier L, Cope L, Bolstad BM, Irizarry RA. affy--analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 2004; 20:307-15; PMID:14960456; http://dx.doi.org/10.1093/bioinformatics/btg405
-
(2004)
Bioinformatics
, vol.20
, pp. 307-315
-
-
Gautier, L.1
Cope, L.2
Bolstad, B.M.3
Irizarry, R.A.4
-
25
-
-
0033337021
-
Fisher discriminant analysis with kernels
-
Madison, WI, USA: IEEE
-
Mika S, Ratsch G, Weston J, Scholkopf B, Mullers KR. Fisher discriminant analysis with kernels. Proceedings of the IEEE Signal Processing Society Workshop in Neural Networks for Signal Processing IX. Madison, WI, USA: IEEE, 1999:41-8
-
(1999)
Proceedings of the IEEE Signal Processing Society Workshop in Neural Networks for Signal Processing IX
, pp. 41-48
-
-
Mika, S.1
Ratsch, G.2
Weston, J.3
Scholkopf, B.4
Mullers, K.R.5
-
27
-
-
27144489164
-
A tutorial on support vector machines for pattern recognition
-
Burges C. A tutorial on support vector machines for pattern recognition. DATA MIN KNOWL DISC 1998; 2:121-67; http://dx.doi. org/10.1023/A:1009715923555
-
(1998)
DATA MIN KNOWL DISC
, vol.2
, pp. 121-167
-
-
Burges, C.1
-
28
-
-
0004094721
-
-
Cambridge, MA: The MIT Press
-
Schölkopf B, Smola A. Learning with kernels: support vector machines, regularization, optimization, and beyond. Cambridge, MA: The MIT Press, 2001
-
(2001)
Learning with kernels: support vector machines, regularization, optimization, and beyond
-
-
Schölkopf, B.1
Smola, A.2
-
29
-
-
0036505670
-
A comparison of methods for multiclass support vector machines
-
PMID:18244442
-
Hsu C-W, Lin C-J. A comparison of methods for multiclass support vector machines. IEEE Trans Neural Netw 2002; 13:415-25; PMID:18244442; http://dx.doi.org/10.1109/72.991427
-
(2002)
IEEE Trans Neural Netw
, vol.13
, pp. 415-425
-
-
Hsu, C-W.1
Lin, C-J.2
-
31
-
-
84898984897
-
Nonlinear discriminant analysis using kernel functions
-
Solla SA, Leen TK, Muller KR, eds. MIT Press
-
Roth V, Steinhage V. Nonlinear discriminant analysis using kernel functions. In: Solla SA, Leen TK, Muller KR, eds. Advances in Neural Information Processing Systems: MIT Press, 1999:568-74
-
(1999)
Advances in Neural Information Processing Systems
, pp. 568-574
-
-
Roth, V.1
Steinhage, V.2
-
32
-
-
0031381525
-
Wrappers for feature subset selection
-
Kohavi R, John G. Wrappers for feature subset selection. Artif Intell 1997; 97:273-324; http://dx.doi.org/10.1016/S0004-3702(97)00043-X
-
(1997)
Artif Intell
, vol.97
, pp. 273-324
-
-
Kohavi, R.1
John, G.2
-
33
-
-
84876921784
-
Multiclass feature selection with kernel Gram-matrix-based criteria
-
Ramona M, Richard G, David B. Multiclass feature selection with kernel Gram-matrix-based criteria. IEEE Trans Neural Netw Learn Syst 2012; 23:1611-23; http://dx.doi.org/10.1109/TNNLS.2012.2201748
-
(2012)
IEEE Trans Neural Netw Learn Syst
, vol.23
, pp. 1611-1623
-
-
Ramona, M.1
Richard, G.2
David, B.3
-
34
-
-
84898936871
-
On kernel-target alignment
-
Dietterich TG, Becker S, Gharhamani Z, eds. MIT Press
-
Cristianini N, Taylor J, Elisseeff A. On kernel-target alignment. In: Dietterich TG, Becker S, Gharhamani Z, eds. Advances in Neural Information Processing Systems: MIT Press, 2002; 367-73
-
(2002)
Advances in Neural Information Processing Systems
, pp. 367-373
-
-
Cristianini, N.1
Taylor, J.2
Elisseeff, A.3
-
35
-
-
0036161259
-
Gene selection for cancer classification using support vector machines
-
Guyon I, Weston J, Barnhill S, Vapnik V. Gene selection for cancer classification using support vector machines. Mach Learn 2002; 46:389-422; http://dx.doi.org/10.1023/A:1012487302797
-
(2002)
Mach Learn
, vol.46
, pp. 389-422
-
-
Guyon, I.1
Weston, J.2
Barnhill, S.3
Vapnik, V.4
-
36
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Smyth GK. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 2004; 3:Article3
-
(2004)
Stat Appl Genet Mol Biol
, pp. 3
-
-
Smyth, G.K.1
|