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Volumn 28, Issue 9, 2012, Pages 1193-1201

Industrial methodology for process verification in research (IMPROVER): Toward systems biology verification

Author keywords

[No Author keywords available]

Indexed keywords

METHODOLOGY; PEER REVIEW; PUBLICATION; REPRODUCIBILITY; REVIEW; SYSTEMS BIOLOGY; WORKFLOW;

EID: 84860475570     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts116     Document Type: Review
Times cited : (40)

References (39)
  • 2
    • 46849111378 scopus 로고    scopus 로고
    • Reviewing peer review
    • Alberts, B. et al. (2008) Reviewing peer review. Science, 321, 15.
    • (2008) Science , vol.321 , pp. 15
    • Alberts, B.1
  • 4
    • 74249107702 scopus 로고    scopus 로고
    • Assessment of CASP8 structure predictions for template free targets
    • Ben-David, M. et al. (2009) Assessment of CASP8 structure predictions for template free targets. Proteins, 77 (Suppl. 9), 50-65.
    • (2009) Proteins , vol.77 , Issue.SUPPL. 9 , pp. 50-65
    • Ben-David, M.1
  • 5
    • 54149084585 scopus 로고    scopus 로고
    • Multiple sclerosis
    • Compston, A. and Coles, A. (2008) Multiple sclerosis. Lancet, 372, 1502-1517.
    • (2008) Lancet , vol.372 , pp. 1502-1517
    • Compston, A.1    Coles, A.2
  • 7
    • 79955765957 scopus 로고    scopus 로고
    • Validation of gene regulatory networks: scientific and inferential
    • Dougherty, E.R. (2011)Validation of gene regulatory networks: scientific and inferential. Brief Bioinform., 12, 245-252.
    • (2011) Brief Bioinform , vol.12 , pp. 245-252
    • Dougherty, E.R.1
  • 8
    • 77956040602 scopus 로고    scopus 로고
    • High-quality binary interactome mapping
    • Dreze, M. et al. (2010) High-quality binary interactome mapping. Methods Enzymol., 470, 281-315.
    • (2010) Methods Enzymol , vol.470 , pp. 281-315
    • Dreze, M.1
  • 9
    • 0030285403 scopus 로고    scopus 로고
    • TheKDDprocess for extracting useful knowledge from volumes of data
    • Fayyad, U. et al. (1996) TheKDDprocess for extracting useful knowledge from volumes of data. Commun. ACM, 39, 27-34.
    • (1996) Commun. ACM , vol.39 , pp. 27-34
    • Fayyad, U.1
  • 10
    • 33644555054 scopus 로고    scopus 로고
    • Proteome survey reveals modularity of the yeast cell machinery
    • Gavin, A.C. et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature, 440, 631-636.
    • (2006) Nature , vol.440 , pp. 631-636
    • Gavin, A.C.1
  • 11
    • 33947304181 scopus 로고    scopus 로고
    • Overview of BioCreAtIvE: critical assessment of information extraction for biology
    • Hirschman, L. et al. (2005) Overview of BioCreAtIvE: critical assessment of information extraction for biology. BMC Bioinformatics, 6 (Suppl. 1), S1.
    • (2005) BMC Bioinformatics , vol.6 , Issue.SUPPL. 1
    • Hirschman, L.1
  • 12
    • 13444304216 scopus 로고    scopus 로고
    • Microarrays and molecular research: noise discovery?
    • Ioannidis, J.P.A. (2005) Microarrays and molecular research: noise discovery? Lancet, 365, 454-455.
    • (2005) Lancet , vol.365 , pp. 454-455
    • Ioannidis, J.P.A.1
  • 13
    • 0035836765 scopus 로고    scopus 로고
    • A comprehensive two-hybrid analysis to explore the yeast protein interactome
    • Ito, T. et al. (2001) A comprehensive two-hybrid analysis to explore the yeast protein interactome. In Proc. Natl Acad. Sci. USA, 98, 4569-4574.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 4569-4574
    • Ito, T.1
  • 14
    • 77955362768 scopus 로고    scopus 로고
    • Over-optimism in bioinformatics: an illustration
    • Jelizarow, M. et al. (2010) Over-optimism in bioinformatics: an illustration. Bioinformatics, 26, 1990-1998.
    • (2010) Bioinformatics , vol.26 , pp. 1990-1998
    • Jelizarow, M.1
  • 16
    • 61949248719 scopus 로고    scopus 로고
    • Master regulators used as breast cancer metastasis classifier
    • Lim, W.K. et al. (2009) Master regulators used as breast cancer metastasis classifier. Pac. Symp. Biocomput., 504-515.
    • (2009) Pac. Symp. Biocomput. , pp. 504-515
    • Lim, W.K.1
  • 17
    • 78751670548 scopus 로고    scopus 로고
    • Peer review: trial by Twitter
    • Mandavilli, A. (2011) Peer review: trial by Twitter. Nature, 469, 286-287.
    • (2011) Nature , vol.469 , pp. 286-287
    • Mandavilli, A.1
  • 18
    • 77950910419 scopus 로고    scopus 로고
    • Revealing strengths and weaknesses of methods for gene network inference
    • Marbach, D. et al. (2010) Revealing strengths and weaknesses of methods for gene network inference. In Proc. Natl. Acad. Sci. USA, 107, 6286-6291.
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 6286-6291
    • Marbach, D.1
  • 19
    • 4444371602 scopus 로고    scopus 로고
    • Towards sound epistemological foundations of statistical methods for high-dimensional biology
    • Mehta, T. et al. (2004) Towards sound epistemological foundations of statistical methods for high-dimensional biology. Nat. Genet., 36, 943-947.
    • (2004) Nat. Genet. , vol.36 , pp. 943-947
    • Mehta, T.1
  • 20
    • 80052730617 scopus 로고    scopus 로고
    • Verification of systems biology research in the age of collaborative competition
    • Meyer, P. et al. (2011)Verification of systems biology research in the age of collaborative competition. Nat. Biotech., 29, 811-815.
    • (2011) Nat. Biotech. , vol.29 , pp. 811-815
    • Meyer, P.1
  • 21
    • 33646818945 scopus 로고    scopus 로고
    • Multiple sclerosis as a vascular disease
    • Minagar, A. et al. (2006) Multiple sclerosis as a vascular disease. Neurol. Res., 28, 230-235.
    • (2006) Neurol. Res. , vol.28 , pp. 230-235
    • Minagar, A.1
  • 22
    • 41349103793 scopus 로고    scopus 로고
    • Overview of BioCreative II gene normalization
    • Morgan, A.A. et al. (2008) Overview of BioCreative II gene normalization. Genome Biol., 9 Suppl 2, S3.
    • (2008) Genome Biol , vol.9 , Issue.SUPPL. 2
    • Morgan, A.A.1
  • 23
    • 84995046262 scopus 로고
    • A large-scale experiment to assess protein structure prediction methods
    • Moult, J. et al. (1995) A large-scale experiment to assess protein structure prediction methods. Prot. Struct. Func. Bioinform., 23, ii-iv.
    • (1995) Prot. Struct. Func. Bioinform. , vol.23
    • Moult, J.1
  • 24
    • 0030220165 scopus 로고    scopus 로고
    • The current state of the art in protein structure prediction
    • Moult, J. (1996) The current state of the art in protein structure prediction. Current Opinion in Biotechnology, 7, 422-427.
    • (1996) Current Opinion in Biotechnology , vol.7 , pp. 422-427
    • Moult, J.1
  • 25
    • 80054088224 scopus 로고    scopus 로고
    • The self-assessment trap: can we all be better than average?
    • Norel, R. et al. (2011) The self-assessment trap: can we all be better than average? Mol. Syst. Biol., 7, 537.
    • (2011) Mol. Syst. Biol. , vol.7 , pp. 537
    • Norel, R.1
  • 27
    • 19944422061 scopus 로고    scopus 로고
    • A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer
    • Paik, S. et al. (2004) A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer. New Engl. J. Med., 351, 2817-2826.
    • (2004) New Engl. J. Med. , vol.351 , pp. 2817-2826
    • Paik, S.1
  • 29
    • 77949644952 scopus 로고    scopus 로고
    • Towards a rigorous assessment of systems biology models: the DREAM3 challenges
    • Prill, R.J. et al. (2010) Towards a rigorous assessment of systems biology models: the DREAM3 challenges. PLoS One, 5, e9202.
    • (2010) PLoS One , vol.5
    • Prill, R.J.1
  • 30
    • 80052592949 scopus 로고    scopus 로고
    • Crowdsourcing network inference: the DREAM predictive signaling network challenge
    • Prill, R.J. et al. (2011) Crowdsourcing network inference: the DREAM predictive signaling network challenge. Sci. Signal., 4, mr7.
    • (2011) Sci. Signal. , vol.4
    • Prill, R.J.1
  • 31
    • 34548292504 scopus 로고    scopus 로고
    • PLINK: a tool set for whole-genome association and populationbased linkage analyses
    • Purcell, S. et al. (2007) PLINK: a tool set for whole-genome association and populationbased linkage analyses. Am. J. Hum. Genet., 81, 559-575.
    • (2007) Am. J. Hum. Genet. , vol.81 , pp. 559-575
    • Purcell, S.1
  • 32
    • 33644608613 scopus 로고    scopus 로고
    • Natalizumab plus interferon beta-1a for relapsing multiple sclerosis
    • Rudick, R.A. et al. (2006) Natalizumab plus interferon beta-1a for relapsing multiple sclerosis. New Engl. J. Med., 354, 911-923.
    • (2006) New Engl. J. Med. , vol.354 , pp. 911-923
    • Rudick, R.A.1
  • 33
    • 0036674592 scopus 로고    scopus 로고
    • The history of the peer-review process
    • Spier, R. (2002) The history of the peer-review process. Trends Biotechnol., 20, 357-358.
    • (2002) Trends Biotechnol , vol.20 , pp. 357-358
    • Spier, R.1
  • 34
    • 36249019789 scopus 로고    scopus 로고
    • Dialogue on reverse-engineering assessment and methods
    • Stolovitzky, G. et al. (2007) Dialogue on reverse-engineering assessment and methods. Ann. NY. Acad. Sci., 1115, 1-22.
    • (2007) Ann. NY. Acad. Sci. , vol.1115 , pp. 1-22
    • Stolovitzky, G.1
  • 35
    • 63849210631 scopus 로고    scopus 로고
    • Lessons from the DREAM2 challenges
    • Stolovitzky, G. et al. (2009) Lessons from the DREAM2 challenges. Ann.NY. Acad. Sci., 1158, 159-195.
    • (2009) Ann.NY. Acad. Sci. , vol.1158 , pp. 159-195
    • Stolovitzky, G.1
  • 36
    • 77953135586 scopus 로고    scopus 로고
    • What should physicians look for in evaluating prognostic gene-expression signatures?
    • Subramanian, J. and Simon, R. (2010) What should physicians look for in evaluating prognostic gene-expression signatures? Nat. Rev. Clin. Oncol., 7, 327-334.
    • (2010) Nat. Rev. Clin. Oncol. , vol.7 , pp. 327-334
    • Subramanian, J.1    Simon, R.2
  • 37
    • 0034124939 scopus 로고    scopus 로고
    • Systematic and large-scale two-hybrid screens
    • Uetz, P. and Hughes, R.E. (2000) Systematic and large-scale two-hybrid screens. Curr. Opin. Microbiol., 3, 303-308.
    • (2000) Curr. Opin. Microbiol. , vol.3 , pp. 303-308
    • Uetz, P.1    Hughes, R.E.2
  • 38
    • 0037137519 scopus 로고    scopus 로고
    • A gene-expression signature as a predictor of survival in breast cancer
    • van de Vijver, M.J. et al. (2002) A gene-expression signature as a predictor of survival in breast cancer. New Engl. J. Med., 347, 1999-2009.
    • (2002) New Engl. J. Med. , vol.347 , pp. 1999-2009
    • van de Vijver, M.J.1
  • 39
    • 1842861590 scopus 로고    scopus 로고
    • Prediction of protein-protein interactions: the CAPRI experiment, its evaluation and implications
    • Wodak, S.J. and Mendez, R. (2004) Prediction of protein-protein interactions: the CAPRI experiment, its evaluation and implications. Curr. Opin. Struct. Biol., 14, 242-249.
    • (2004) Curr. Opin. Struct. Biol. , vol.14 , pp. 242-249
    • Wodak, S.J.1    Mendez, R.2


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