-
1
-
-
33749444113
-
Competition may determine the diversity of transposable elements
-
Abrusan G & Krambeck HJ (2006) Competition may determine the diversity of transposable elements. Theor Popul Biol 70: 364-375.
-
(2006)
Theor Popul Biol
, vol.70
, pp. 364-375
-
-
Abrusan, G.1
Krambeck, H.J.2
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW & Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
33750294064
-
Human immunodeficiency virus type 1 Gag polyprotein modulates its own translation
-
Anderson EC & Lever AML (2006) Human immunodeficiency virus type 1 Gag polyprotein modulates its own translation. J Virol 80: 10478-10486.
-
(2006)
J Virol
, vol.80
, pp. 10478-10486
-
-
Anderson, E.C.1
Lever, A.M.L.2
-
4
-
-
57049092878
-
The take and give between retrotransposable elements and their hosts
-
Beauregard A, Curcio MJ & Belfort M (2008) The take and give between retrotransposable elements and their hosts. Annu Rev Genet 42: 587-617.
-
(2008)
Annu Rev Genet
, vol.42
, pp. 587-617
-
-
Beauregard, A.1
Curcio, M.J.2
Belfort, M.3
-
5
-
-
29844452924
-
Virus-like particles of the Ty3 retrotransposon assemble in association with P-body components
-
Beliakova-Bethell N, Beckham C, Giddings TH Jr, Winey M, Parker R & Sandmeyer S (2006) Virus-like particles of the Ty3 retrotransposon assemble in association with P-body components. RNA 12: 94-101.
-
(2006)
RNA
, vol.12
, pp. 94-101
-
-
Beliakova-Bethell, N.1
Beckham, C.2
Giddings Jr, T.H.3
Winey, M.4
Parker, R.5
Sandmeyer, S.6
-
6
-
-
40349116304
-
A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae
-
Berretta J, Pinskaya M & Morillon A (2008) A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae. Genes Dev 22: 615-626.
-
(2008)
Genes Dev
, vol.22
, pp. 615-626
-
-
Berretta, J.1
Pinskaya, M.2
Morillon, A.3
-
7
-
-
0022815986
-
Saccharomyces cerevisiae SPT3 gene is required for transposition and transpositional recombination of chromosomal Ty elements
-
Boeke JD, Styles CA & Fink GR (1986) Saccharomyces cerevisiae SPT3 gene is required for transposition and transpositional recombination of chromosomal Ty elements. Mol Cell Biol 6: 3575-3581.
-
(1986)
Mol Cell Biol
, vol.6
, pp. 3575-3581
-
-
Boeke, J.D.1
Styles, C.A.2
Fink, G.R.3
-
8
-
-
0023990722
-
The Saccharomyces cerevisiae genome contains functional and nonfunctional copies of transposon Ty1
-
Boeke JD, Eichinger D, Castrillon D & Fink GR (1988) The Saccharomyces cerevisiae genome contains functional and nonfunctional copies of transposon Ty1. Mol Cell Biol 8: 1432-1442.
-
(1988)
Mol Cell Biol
, vol.8
, pp. 1432-1442
-
-
Boeke, J.D.1
Eichinger, D.2
Castrillon, D.3
Fink, G.R.4
-
10
-
-
0037965788
-
Hot L1s account for the bulk of retrotransposition in the human population
-
Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, Moran JV & Kazazian HH Jr (2003) Hot L1s account for the bulk of retrotransposition in the human population. P Natl Acad Sci USA 100: 5280-5285.
-
(2003)
P Natl Acad Sci USA
, vol.100
, pp. 5280-5285
-
-
Brouha, B.1
Schustak, J.2
Badge, R.M.3
Lutz-Prigge, S.4
Farley, A.H.5
Moran, J.V.6
Kazazian Jr, H.H.7
-
11
-
-
73549122350
-
P-body components are required for Ty1 retrotransposition during assembly of retrotransposition-competent virus-like particles
-
Checkley MA, Nagashima K, Lockett SJ, Nyswaner KM & Garfinkel DJ (2010) P-body components are required for Ty1 retrotransposition during assembly of retrotransposition-competent virus-like particles. Mol Cell Biol 30: 382-398.
-
(2010)
Mol Cell Biol
, vol.30
, pp. 382-398
-
-
Checkley, M.A.1
Nagashima, K.2
Lockett, S.J.3
Nyswaner, K.M.4
Garfinkel, D.J.5
-
12
-
-
70349318211
-
The impact of retrotransposons on human genome evolution
-
Cordaux R & Batzer MA (2009) The impact of retrotransposons on human genome evolution. Nat Rev Genet 10: 691-703.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 691-703
-
-
Cordaux, R.1
Batzer, M.A.2
-
13
-
-
0028222894
-
Heterogeneous functional Ty1 elements are abundant in the Saccharomyces cerevisiae genome
-
Curcio MJ & Garfinkel DJ (1994) Heterogeneous functional Ty1 elements are abundant in the Saccharomyces cerevisiae genome. Genetics 136: 1245-1259.
-
(1994)
Genetics
, vol.136
, pp. 1245-1259
-
-
Curcio, M.J.1
Garfinkel, D.J.2
-
14
-
-
77950346033
-
Bifurcation and enhancement of autonomous-nonautonomous retrotransposon partnership through LTR Swapping in soybean
-
Du J, Tian Z, Bowen NJ, Schmutz J, Shoemaker RC & Ma J (2010) Bifurcation and enhancement of autonomous-nonautonomous retrotransposon partnership through LTR Swapping in soybean. Plant Cell 22: 48-61.
-
(2010)
Plant Cell
, vol.22
, pp. 48-61
-
-
Du, J.1
Tian, Z.2
Bowen, N.J.3
Schmutz, J.4
Shoemaker, R.C.5
Ma, J.6
-
15
-
-
77953754620
-
Yeast evolutionary genomics
-
Dujon B (2010) Yeast evolutionary genomics. Nat Rev Genet 11: 512-24.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 512-524
-
-
Dujon, B.1
-
16
-
-
77951489100
-
5' to 3' mRNA decay factors colocalize with Ty1 Gag and human APOBEC3G and promote Ty1 retrotransposition
-
Dutko JA, Kenny AE, Gamache ER & Curcio MJ (2010) 5' to 3' mRNA decay factors colocalize with Ty1 Gag and human APOBEC3G and promote Ty1 retrotransposition. J Virol 84: 5052-5066.
-
(2010)
J Virol
, vol.84
, pp. 5052-5066
-
-
Dutko, J.A.1
Kenny, A.E.2
Gamache, E.R.3
Curcio, M.J.4
-
17
-
-
65349134675
-
Influence of genetic background on the occurrence of chromosomal rearrangements in Saccharomyces cerevisiae
-
Fritsch ES, Schacherer J, Bleykasten-Grosshans C, Souciet JL, Potier S & de Montigny J (2009) Influence of genetic background on the occurrence of chromosomal rearrangements in Saccharomyces cerevisiae. BMC Genomics 10: 99.
-
(2009)
BMC Genomics
, vol.10
, pp. 99
-
-
Fritsch, E.S.1
Schacherer, J.2
Bleykasten-Grosshans, C.3
Souciet, J.L.4
Potier, S.5
de Montigny, J.6
-
18
-
-
0032775427
-
Fidelity of retrotransposon replication
-
Gabriel A & Mules EH (1999) Fidelity of retrotransposon replication. Ann NY Acad Sci 870: 108-118.
-
(1999)
Ann NY Acad Sci
, vol.870
, pp. 108-118
-
-
Gabriel, A.1
Mules, E.H.2
-
19
-
-
0029819321
-
Replication infidelity during a single cycle of Ty1 retrotransposition
-
Gabriel A, Willems M, Mules EH & Boeke JD (1996) Replication infidelity during a single cycle of Ty1 retrotransposition. P Natl Acad Sci USA 93: 7767-7771.
-
(1996)
P Natl Acad Sci USA
, vol.93
, pp. 7767-7771
-
-
Gabriel, A.1
Willems, M.2
Mules, E.H.3
Boeke, J.D.4
-
20
-
-
33845998560
-
Global mapping of transposon location
-
Gabriel A, Dapprich J, Kunkel M, Gresham D, Pratt SC & Dunham MJ (2006) Global mapping of transposon location. PLoS Genet 2: e212.
-
(2006)
PLoS Genet
, vol.2
-
-
Gabriel, A.1
Dapprich, J.2
Kunkel, M.3
Gresham, D.4
Pratt, S.C.5
Dunham, M.J.6
-
21
-
-
70349490066
-
Comparative genomics of protoploid Saccharomycetaceae
-
Génolevures-consortium
-
Génolevures-consortium, Souciet JL, Dujon B et al. (2009) Comparative genomics of protoploid Saccharomycetaceae. Genome Res 19: 1696-1709.
-
(2009)
Genome Res
, vol.19
, pp. 1696-1709
-
-
Souciet, J.L.1
Dujon, B.2
-
22
-
-
0033977268
-
High rate of recombination throughout the human immunodeficiency virus type 1 genome
-
Jetzt AE, Yu H, Klarmann GJ, Ron Y, Preston BD & Dougherty JP (2000) High rate of recombination throughout the human immunodeficiency virus type 1 genome. J Virol 74: 1234-1240.
-
(2000)
J Virol
, vol.74
, pp. 1234-1240
-
-
Jetzt, A.E.1
Yu, H.2
Klarmann, G.J.3
Ron, Y.4
Preston, B.D.5
Dougherty, J.P.6
-
23
-
-
0031749010
-
Evidence for the role of recombination in the regulatory evolution of Saccharomyces cerevisiae Ty elements
-
Jordan IK & McDonald JF (1998) Evidence for the role of recombination in the regulatory evolution of Saccharomyces cerevisiae Ty elements. J Mol Evol 47: 14-20.
-
(1998)
J Mol Evol
, vol.47
, pp. 14-20
-
-
Jordan, I.K.1
McDonald, J.F.2
-
24
-
-
0034160156
-
Transposable elements and host genome evolution
-
Kidwell MG & Lisch DR (2000) Transposable elements and host genome evolution. Trends Ecol Evol 15: 95-99.
-
(2000)
Trends Ecol Evol
, vol.15
, pp. 95-99
-
-
Kidwell, M.G.1
Lisch, D.R.2
-
25
-
-
33747489675
-
Evolution of the hemiascomycete yeasts; on life styles and the importance of inbreeding
-
Knop M (2006) Evolution of the hemiascomycete yeasts: on life styles and the importance of inbreeding. Bioessays 28: 696-708.
-
(2006)
Bioessays
, vol.28
, pp. 696-708
-
-
Knop, M.1
-
27
-
-
0001313535
-
The distribution of numbers of mutants in bacterial populations
-
Lea DE & Coulson CA (1949) The distribution of numbers of mutants in bacterial populations. J Genet 49: 264-285.
-
(1949)
J Genet
, vol.49
, pp. 264-285
-
-
Lea, D.E.1
Coulson, C.A.2
-
28
-
-
33750461976
-
Population genetics models of competition between transposable element subfamilies
-
Le Rouzic A & Capy P (2006) Population genetics models of competition between transposable element subfamilies. Genetics 174: 785-793.
-
(2006)
Genetics
, vol.174
, pp. 785-793
-
-
Le Rouzic, A.1
Capy, P.2
-
30
-
-
18944382213
-
Happy together: the life and times of Ty retrotransposons and their hosts
-
Lesage P & Todeschini AL (2005) Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet Genome Res 110: 70-90.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 70-90
-
-
Lesage, P.1
Todeschini, A.L.2
-
31
-
-
62649089109
-
Population genomics of domestic and wild yeasts
-
Liti G, Carter DM, Moses AM et al. (2009) Population genomics of domestic and wild yeasts. Nature 458: 337-341.
-
(2009)
Nature
, vol.458
, pp. 337-341
-
-
Liti, G.1
Carter, D.M.2
Moses, A.M.3
-
32
-
-
77951144839
-
Perigord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis
-
Martin F, Kohler A, Murat C et al. (2010) Perigord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis. Nature 464: 1033-1038.
-
(2010)
Nature
, vol.464
, pp. 1033-1038
-
-
Martin, F.1
Kohler, A.2
Murat, C.3
-
33
-
-
0036122489
-
Differential effects of chromatin and Gcn4 on the 50-fold range of expression among individual yeast Ty1 retrotransposons
-
Morillon A, Benard L, Springer M & Lesage P (2002) Differential effects of chromatin and Gcn4 on the 50-fold range of expression among individual yeast Ty1 retrotransposons. Mol Cell Biol 22: 2078-2088.
-
(2002)
Mol Cell Biol
, vol.22
, pp. 2078-2088
-
-
Morillon, A.1
Benard, L.2
Springer, M.3
Lesage, P.4
-
34
-
-
69249205498
-
Transposable elements and factors influencing their success in eukaryotes
-
Pritham EJ (2009) Transposable elements and factors influencing their success in eukaryotes. J Hered 100: 648-655.
-
(2009)
J Hered
, vol.100
, pp. 648-655
-
-
Pritham, E.J.1
-
35
-
-
0028968084
-
Reactivation of the ATCase domain of the URA2 gene complex: a positive selection method for Ty insertions and chromosomal rearrangements in Saccharomyces cerevisiae
-
Roelants F, Potier S, Souciet JL & de Montigny J (1995) Reactivation of the ATCase domain of the URA2 gene complex: a positive selection method for Ty insertions and chromosomal rearrangements in Saccharomyces cerevisiae. Mol Gen Genet 246: 767-773.
-
(1995)
Mol Gen Genet
, vol.246
, pp. 767-773
-
-
Roelants, F.1
Potier, S.2
Souciet, J.L.3
de Montigny, J.4
-
36
-
-
0031104680
-
Delta sequence of Ty1 transposon can initiate transcription of the distal part of the URA2 gene complex in Saccharomyces cerevisiae
-
Roelants F, Potier S, Souciet JL & de Montigny J (1997) Delta sequence of Ty1 transposon can initiate transcription of the distal part of the URA2 gene complex in Saccharomyces cerevisiae. FEMS Microbiol Lett 148: 69-74.
-
(1997)
FEMS Microbiol Lett
, vol.148
, pp. 69-74
-
-
Roelants, F.1
Potier, S.2
Souciet, J.L.3
de Montigny, J.4
-
37
-
-
33845190150
-
Parasitism and the retrotransposon life cycle in plants: a hitchhiker's guide to the genome
-
Sabot F & Schulman AH (2006) Parasitism and the retrotransposon life cycle in plants: a hitchhiker's guide to the genome. Heredity 97: 381-388.
-
(2006)
Heredity
, vol.97
, pp. 381-388
-
-
Sabot, F.1
Schulman, A.H.2
-
38
-
-
3543049575
-
Recovery of a function involving gene duplication by retroposition in Saccharomyces cerevisiae
-
Schacherer J, Tourrette Y, Souciet JL, Potier S & De Montigny J (2004) Recovery of a function involving gene duplication by retroposition in Saccharomyces cerevisiae. Genome Res 14: 1291-1297.
-
(2004)
Genome Res
, vol.14
, pp. 1291-1297
-
-
Schacherer, J.1
Tourrette, Y.2
Souciet, J.L.3
Potier, S.4
De Montigny, J.5
-
39
-
-
50249169422
-
Remodeling yeast gene transcription by activating the Ty1 long terminal repeat retrotransposon under severe adenine deficiency
-
Servant G, Pennetier C & Lesage P (2008) Remodeling yeast gene transcription by activating the Ty1 long terminal repeat retrotransposon under severe adenine deficiency. Mol Cell Biol 28: 5543-5554.
-
(2008)
Mol Cell Biol
, vol.28
, pp. 5543-5554
-
-
Servant, G.1
Pennetier, C.2
Lesage, P.3
-
40
-
-
71049169179
-
Yeast genome analysis identifies chromosomal translocation, gene conversion events and several sites of Ty element insertion
-
Shibata Y, Malhotra A, Bekiranov S & Dutta A (2009) Yeast genome analysis identifies chromosomal translocation, gene conversion events and several sites of Ty element insertion. Nucleic Acids Res 37: 6454-6465.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 6454-6465
-
-
Shibata, Y.1
Malhotra, A.2
Bekiranov, S.3
Dutta, A.4
-
42
-
-
34247339783
-
Spontaneous deletions and reciprocal translocations in Saccharomyces cerevisiae: influence of ploidy
-
Tourrette Y, Schacherer J, Fritsch E, Potier S, Souciet JL & de Montigny J (2007) Spontaneous deletions and reciprocal translocations in Saccharomyces cerevisiae: influence of ploidy. Mol Microbiol 64: 382-395.
-
(2007)
Mol Microbiol
, vol.64
, pp. 382-395
-
-
Tourrette, Y.1
Schacherer, J.2
Fritsch, E.3
Potier, S.4
Souciet, J.L.5
de Montigny, J.6
-
43
-
-
68249158010
-
Proliferation of Ty3/gypsy-like retrotransposons in hybrid sunflower taxa inferred from phylogenetic data
-
Ungerer MC, Strakosh SC & Stimpson KM (2009) Proliferation of Ty3/gypsy-like retrotransposons in hybrid sunflower taxa inferred from phylogenetic data. BMC Biol 7: 40.
-
(2009)
BMC Biol
, vol.7
, pp. 40
-
-
Ungerer, M.C.1
Strakosh, S.C.2
Stimpson, K.M.3
-
44
-
-
67650142756
-
Dynamics of transposable elements: towards a community ecology of the genome
-
Venner S, Feschotte C & Biemont C (2009) Dynamics of transposable elements: towards a community ecology of the genome. Trends Genet 25: 317-323.
-
(2009)
Trends Genet
, vol.25
, pp. 317-323
-
-
Venner, S.1
Feschotte, C.2
Biemont, C.3
-
45
-
-
0037385669
-
Network analysis of human and simian immunodeficiency virus sequence sets reveals massive recombination resulting in shorter pathways
-
Wain-Hobson S, Renoux-Elbe C, Vartanian JP & Meyerhans A (2003) Network analysis of human and simian immunodeficiency virus sequence sets reveals massive recombination resulting in shorter pathways. J Gen Virol 84: 885-895.
-
(2003)
J Gen Virol
, vol.84
, pp. 885-895
-
-
Wain-Hobson, S.1
Renoux-Elbe, C.2
Vartanian, J.P.3
Meyerhans, A.4
-
46
-
-
34547913442
-
Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789
-
Wei W, McCusker JH, Hyman RW et al. (2007) Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789. P Natl Acad Sci USA 104: 12825-12830.
-
(2007)
P Natl Acad Sci USA
, vol.104
, pp. 12825-12830
-
-
Wei, W.1
McCusker, J.H.2
Hyman, R.W.3
-
47
-
-
0033790977
-
Involvement of very short DNA tandem repeats and the influence of the RAD52 gene on the occurrence of deletions in Saccharomyces cerevisiae
-
Welcker AJ, de Montigny J, Potier S & Souciet JL (2000) Involvement of very short DNA tandem repeats and the influence of the RAD52 gene on the occurrence of deletions in Saccharomyces cerevisiae. Genetics 156: 549-557.
-
(2000)
Genetics
, vol.156
, pp. 549-557
-
-
Welcker, A.J.1
de Montigny, J.2
Potier, S.3
Souciet, J.L.4
-
48
-
-
33845204670
-
Transposon insertion site profiling chip (TIP-chip)
-
Wheelan SJ, Scheifele LZ, Martinez-Murillo F, Irizarry RA & Boeke JD (2006) Transposon insertion site profiling chip (TIP-chip). P Natl Acad Sci USA 103: 17632-17637.
-
(2006)
P Natl Acad Sci USA
, vol.103
, pp. 17632-17637
-
-
Wheelan, S.J.1
Scheifele, L.Z.2
Martinez-Murillo, F.3
Irizarry, R.A.4
Boeke, J.D.5
-
49
-
-
0028039885
-
A physical comparison of chromosome III in six strains of Saccharomyces cerevisiae
-
Wicksteed BL, Collins I, Dershowitz A et al. (1994) A physical comparison of chromosome III in six strains of Saccharomyces cerevisiae. Yeast 10: 39-57.
-
(1994)
Yeast
, vol.10
, pp. 39-57
-
-
Wicksteed, B.L.1
Collins, I.2
Dershowitz, A.3
-
50
-
-
0033045438
-
Reverse transcription of the yeast Ty1 retrotransposon: the mode of first strand transfer is either intermolecular or intramolecular
-
Wilhelm M, Boutabout M, Heyman T & Wilhelm FX (1999) Reverse transcription of the yeast Ty1 retrotransposon: the mode of first strand transfer is either intermolecular or intramolecular. J Mol Biol 288: 505-510.
-
(1999)
J Mol Biol
, vol.288
, pp. 505-510
-
-
Wilhelm, M.1
Boutabout, M.2
Heyman, T.3
Wilhelm, F.X.4
-
51
-
-
0028794516
-
Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C
-
Winston F, Dollard C & Ricupero-Hovasse SL (1995) Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C. Yeast 11: 53-55.
-
(1995)
Yeast
, vol.11
, pp. 53-55
-
-
Winston, F.1
Dollard, C.2
Ricupero-Hovasse, S.L.3
-
52
-
-
0023461920
-
High-frequency deletion between homologous sequences during retrotransposition of Ty elements in Saccharomyces cerevisiae
-
Xu H & Boeke JD (1987) High-frequency deletion between homologous sequences during retrotransposition of Ty elements in Saccharomyces cerevisiae. P Natl Acad Sci USA 84: 8553-8557.
-
(1987)
P Natl Acad Sci USA
, vol.84
, pp. 8553-8557
-
-
Xu, H.1
Boeke, J.D.2
|