-
1
-
-
84955581565
-
The development of cryo-EM into a mainstream structural biology technique
-
Nogales, E., The development of cryo-EM into a mainstream structural biology technique. Nat Methods 13 (2016), 24–27.
-
(2016)
Nat Methods
, vol.13
, pp. 24-27
-
-
Nogales, E.1
-
2
-
-
84922988267
-
Three-Dimensional Electron Microscopy of Macromolecular Assemblies: Visualization of Biological Molecules in Their Native State
-
edn 2 Oxford University Press Oxford; New York
-
Frank, J., Three-Dimensional Electron Microscopy of Macromolecular Assemblies: Visualization of Biological Molecules in Their Native State. edn 2, 2006, Oxford University Press, Oxford; New York.
-
(2006)
-
-
Frank, J.1
-
3
-
-
84888613557
-
Invited review article: methods for imaging weak-phase objects in electron microscopy
-
Glaeser, R.M., Invited review article: methods for imaging weak-phase objects in electron microscopy. Rev Sci Instrum, 84, 2013, 111101.
-
(2013)
Rev Sci Instrum
, vol.84
, pp. 111101
-
-
Glaeser, R.M.1
-
4
-
-
84941610517
-
Uber die kontraste von atomen im elektronenmikroskop
-
Boersch, H., Uber die kontraste von atomen im elektronenmikroskop. Zeit Naturforsch 2a (1947), 615–633.
-
(1947)
Zeit Naturforsch
, vol.2a
, pp. 615-633
-
-
Boersch, H.1
-
5
-
-
77957225478
-
Phase plates for transmission electron microscopy
-
(vol 481: Cryo-Em, Part A — Sample Preparation and Data Collection)
-
Danev, R., Nagayama, K., Phase plates for transmission electron microscopy. Methods Enzymol 481 (2010), 343–369 (vol 481: Cryo-Em, Part A — Sample Preparation and Data Collection).
-
(2010)
Methods Enzymol
, vol.481
, pp. 343-369
-
-
Danev, R.1
Nagayama, K.2
-
6
-
-
0034903709
-
Transmission electron microscopy with Zernike phase plate
-
Danev, R., Nagayama, K., Transmission electron microscopy with Zernike phase plate. Ultramicroscopy 88 (2001), 243–252.
-
(2001)
Ultramicroscopy
, vol.88
, pp. 243-252
-
-
Danev, R.1
Nagayama, K.2
-
7
-
-
80052041441
-
Another 60 years in electron microscopy: development of phase-plate electron microscopy and biological applications
-
Nagayama, K., Another 60 years in electron microscopy: development of phase-plate electron microscopy and biological applications. J Electron Microsc 60 (2011), S43–S62.
-
(2011)
J Electron Microsc
, vol.60
, pp. S43-S62
-
-
Nagayama, K.1
-
8
-
-
61849092662
-
Practical factors affecting the performance of a thin-film phase plate for transmission electron microscopy
-
Danev, R., Glaeser, R.M., Nagayama, K., Practical factors affecting the performance of a thin-film phase plate for transmission electron microscopy. Ultramicroscopy 109 (2009), 312–325.
-
(2009)
Ultramicroscopy
, vol.109
, pp. 312-325
-
-
Danev, R.1
Glaeser, R.M.2
Nagayama, K.3
-
9
-
-
84914674933
-
Volta potential phase plate for in-focus phase contrast transmission electron microscopy
-
Danev, R., Buijsse, B., Khoshouei, M., Plitzko, J.M., Baumeister, W., Volta potential phase plate for in-focus phase contrast transmission electron microscopy. Proc Natl Acad Sci U S A 111 (2014), 15635–15640.
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, pp. 15635-15640
-
-
Danev, R.1
Buijsse, B.2
Khoshouei, M.3
Plitzko, J.M.4
Baumeister, W.5
-
10
-
-
77955337464
-
Design of an electron microscope phase plate using a focused continuous-wave laser
-
Muller, H., Jin, J.A., Danev, R., Spence, J., Padmore, H., Glaeser, R.M., Design of an electron microscope phase plate using a focused continuous-wave laser. N J Phys, 12, 2010.
-
(2010)
N J Phys
, vol.12
-
-
Muller, H.1
Jin, J.A.2
Danev, R.3
Spence, J.4
Padmore, H.5
Glaeser, R.M.6
-
11
-
-
85019192356
-
Continuous 40 GW/cm$^2$ laser intensity in a near-concentric optical cavity
-
arXiv:1610.08493
-
Schwartz, O., Axelrod, J.J., Haslinger, P., Ophus, C., Glaeser, R.M., Müller, H., Continuous 40 GW/cm$^2$ laser intensity in a near-concentric optical cavity. 2016 arXiv:1610.08493.
-
(2016)
-
-
Schwartz, O.1
Axelrod, J.J.2
Haslinger, P.3
Ophus, C.4
Glaeser, R.M.5
Müller, H.6
-
12
-
-
84884239080
-
Cryo-electron tomography: the challenge of doing structural biology in situ
-
Lucic, V., Rigort, A., Baumeister, W., Cryo-electron tomography: the challenge of doing structural biology in situ. J Cell Biol 202 (2013), 407–419.
-
(2013)
J Cell Biol
, vol.202
, pp. 407-419
-
-
Lucic, V.1
Rigort, A.2
Baumeister, W.3
-
13
-
-
77953700668
-
Zernike phase contrast cryo-electron tomography
-
Danev, R., Kanamaru, S., Marko, M., Nagayama, K., Zernike phase contrast cryo-electron tomography. J Struct Biol 171 (2010), 174–181.
-
(2010)
J Struct Biol
, vol.171
, pp. 174-181
-
-
Danev, R.1
Kanamaru, S.2
Marko, M.3
Nagayama, K.4
-
14
-
-
70350227153
-
Tuning of the Zernike phase-plate for visualization of detailed ultrastructure in complex biological specimens
-
Fukuda, Y., Fukazawa, Y., Danev, R., Shigemoto, R., Nagayama, K., Tuning of the Zernike phase-plate for visualization of detailed ultrastructure in complex biological specimens. J Struct Biol 168 (2009), 476–484.
-
(2009)
J Struct Biol
, vol.168
, pp. 476-484
-
-
Fukuda, Y.1
Fukazawa, Y.2
Danev, R.3
Shigemoto, R.4
Nagayama, K.5
-
15
-
-
42649085376
-
Zernike phase contrast electron microscopy of ice-embedded influenza A virus
-
Yamaguchi, M., Danev, R., Nishiyama, K., Sugawara, K., Nagayama, K., Zernike phase contrast electron microscopy of ice-embedded influenza A virus. J Struct Biol 162 (2008), 271–276.
-
(2008)
J Struct Biol
, vol.162
, pp. 271-276
-
-
Yamaguchi, M.1
Danev, R.2
Nishiyama, K.3
Sugawara, K.4
Nagayama, K.5
-
16
-
-
77955481741
-
Zernike phase contrast cryo-electron microscopy and tomography for structure determination at nanometer and subnanometer resolutions
-
Murata, K., Liu, X., Danev, R., Jakana, J., Schmid, M.F., King, J., Nagayama, K., Chiu, W., Zernike phase contrast cryo-electron microscopy and tomography for structure determination at nanometer and subnanometer resolutions. Structure 18 (2010), 903–912.
-
(2010)
Structure
, vol.18
, pp. 903-912
-
-
Murata, K.1
Liu, X.2
Danev, R.3
Jakana, J.4
Schmid, M.F.5
King, J.6
Nagayama, K.7
Chiu, W.8
-
17
-
-
84886947216
-
Visualizing virus assembly intermediates inside marine cyanobacteria
-
Dai, W., Fu, C., Raytcheva, D., Flanagan, J., Khant, H.A., Liu, X., Rochat, R.H., Haase-Pettingell, C., Piret, J., Ludtke, S.J., et al. Visualizing virus assembly intermediates inside marine cyanobacteria. Nature 502 (2013), 707–710.
-
(2013)
Nature
, vol.502
, pp. 707-710
-
-
Dai, W.1
Fu, C.2
Raytcheva, D.3
Flanagan, J.4
Khant, H.A.5
Liu, X.6
Rochat, R.H.7
Haase-Pettingell, C.8
Piret, J.9
Ludtke, S.J.10
-
18
-
-
84908192094
-
Zernike phase-contrast electron cryotomography applied to marine cyanobacteria infected with cyanophages
-
Dai, W., Fu, C., Khant, H.A., Ludtke, S.J., Schmid, M.F., Chiu, W., Zernike phase-contrast electron cryotomography applied to marine cyanobacteria infected with cyanophages. Nat Protoc 9 (2014), 2630–2642.
-
(2014)
Nat Protoc
, vol.9
, pp. 2630-2642
-
-
Dai, W.1
Fu, C.2
Khant, H.A.3
Ludtke, S.J.4
Schmid, M.F.5
Chiu, W.6
-
19
-
-
84928696968
-
Electron cryotomography of vitrified cells with a Volta phase plate
-
The authors evaluated the performance of the Volta phase plate (VPP) for cryo-electron tomography. They compared the contrast gain from the VPP with that of an energy filter.
-
19• Fukuda, Y., Laugks, U., Lucic, V., Baumeister, W., Danev, R., Electron cryotomography of vitrified cells with a Volta phase plate. J Struct Biol 190 (2015), 143–154 The authors evaluated the performance of the Volta phase plate (VPP) for cryo-electron tomography. They compared the contrast gain from the VPP with that of an energy filter.
-
(2015)
J Struct Biol
, vol.190
, pp. 143-154
-
-
Fukuda, Y.1
Laugks, U.2
Lucic, V.3
Baumeister, W.4
Danev, R.5
-
20
-
-
84921752079
-
A molecular census of 26S proteasomes in intact neurons
-
This study demonstrated for the first time the capability of phase plate cryo-tomography for ‘visual proteomics’, that is, mapping of the positions and the conformational states of protein complexes in situ.
-
20•• Asano, S., Fukuda, Y., Beck, F., Aufderheide, A., Forster, F., Danev, R., Baumeister, W., A molecular census of 26S proteasomes in intact neurons. Science 347 (2015), 439–442 This study demonstrated for the first time the capability of phase plate cryo-tomography for ‘visual proteomics’, that is, mapping of the positions and the conformational states of protein complexes in situ.
-
(2015)
Science
, vol.347
, pp. 439-442
-
-
Asano, S.1
Fukuda, Y.2
Beck, F.3
Aufderheide, A.4
Forster, F.5
Danev, R.6
Baumeister, W.7
-
21
-
-
84963538105
-
Heterogeneous MAC initiator and pore structures in a lipid bilayer by phase-plate cryo-electron tomography
-
Sharp, T.H., Koster, A.J., Gros, P., Heterogeneous MAC initiator and pore structures in a lipid bilayer by phase-plate cryo-electron tomography. Cell Rep 15 (2016), 1–8.
-
(2016)
Cell Rep
, vol.15
, pp. 1-8
-
-
Sharp, T.H.1
Koster, A.J.2
Gros, P.3
-
22
-
-
84979012601
-
The hemifusion structure induced by influenza virus haemagglutinin is determined by physical properties of the target membranes
-
Chlanda, P., Mekhedov, E., Waters, H., Schwartz, C.L., Fischer, E.R., Ryham, R.J., Cohen, F.S., Blank, P.S., Zimmerberg, J., The hemifusion structure induced by influenza virus haemagglutinin is determined by physical properties of the target membranes. Nat Microbiol, 1, 2016.
-
(2016)
Nat Microbiol
, vol.1
-
-
Chlanda, P.1
Mekhedov, E.2
Waters, H.3
Schwartz, C.L.4
Fischer, E.R.5
Ryham, R.J.6
Cohen, F.S.7
Blank, P.S.8
Zimmerberg, J.9
-
23
-
-
84959419478
-
Visualizing the molecular sociology at the HeLa cell nuclear periphery
-
Using Volta phase plate cryo-tomography the authors visualized the molecular organization around the nuclear envelope of HeLa cells in unprecedented detail.
-
23• Mahamid, J., Pfeffer, S., Schaffer, M., Villa, E., Danev, R., Cuellar, L.K., Forster, F., Hyman, A.A., Plitzko, J.M., Baumeister, W., Visualizing the molecular sociology at the HeLa cell nuclear periphery. Science 351 (2016), 969–972 Using Volta phase plate cryo-tomography the authors visualized the molecular organization around the nuclear envelope of HeLa cells in unprecedented detail.
-
(2016)
Science
, vol.351
, pp. 969-972
-
-
Mahamid, J.1
Pfeffer, S.2
Schaffer, M.3
Villa, E.4
Danev, R.5
Cuellar, L.K.6
Forster, F.7
Hyman, A.A.8
Plitzko, J.M.9
Baumeister, W.10
-
24
-
-
84973538552
-
Subtomogram analysis using the Volta phase plate
-
Khoshouei, M., Pfeffer, S., Baumeister, W., Forster, F., Danev, R., Subtomogram analysis using the Volta phase plate. J Struct Biol 197 (2017), 94–101.
-
(2017)
J Struct Biol
, vol.197
, pp. 94-101
-
-
Khoshouei, M.1
Pfeffer, S.2
Baumeister, W.3
Forster, F.4
Danev, R.5
-
25
-
-
85002737040
-
Optimized cryo-focused ion beam sample preparation aimed at in situ structural studies of membrane proteins
-
Schaffer, M., Mahamid, J., Engel, B.D., Laugks, T., Baumeister, W., Plitzko, J.M., Optimized cryo-focused ion beam sample preparation aimed at in situ structural studies of membrane proteins. J Struct Biol 197 (2017), 73–82.
-
(2017)
J Struct Biol
, vol.197
, pp. 73-82
-
-
Schaffer, M.1
Mahamid, J.2
Engel, B.D.3
Laugks, T.4
Baumeister, W.5
Plitzko, J.M.6
-
26
-
-
84928379119
-
A primer to single-particle cryo-electron microscopy
-
Cheng, Y., Grigorieff, N., Penczek, P.A., Walz, T., A primer to single-particle cryo-electron microscopy. Cell 161 (2015), 438–449.
-
(2015)
Cell
, vol.161
, pp. 438-449
-
-
Cheng, Y.1
Grigorieff, N.2
Penczek, P.A.3
Walz, T.4
-
27
-
-
0029003107
-
The potential and limitations of neutrons, electrons and X-rays for atomic-resolution microscopy of unstained biological molecules
-
Henderson, R., The potential and limitations of neutrons, electrons and X-rays for atomic-resolution microscopy of unstained biological molecules. Q Rev Biophys 28 (1995), 171–193.
-
(1995)
Q Rev Biophys
, vol.28
, pp. 171-193
-
-
Henderson, R.1
-
28
-
-
0033377941
-
Review: electron crystallography: present excitement, a nod to the past, anticipating the future
-
Glaeser, R.M., Review: electron crystallography: present excitement, a nod to the past, anticipating the future. J Struct Biol 128 (1999), 3–14.
-
(1999)
J Struct Biol
, vol.128
, pp. 3-14
-
-
Glaeser, R.M.1
-
29
-
-
73449119968
-
Zernike phase plate cryoelectron microscopy facilitates single particle analysis of unstained asymmetric protein complexes
-
Chang, W.H., Chiu, M.T.K., Chen, C.Y., Yen, C.F., Lin, Y.C., Weng, Y.P., Chang, J.C., Wu, Y.M., Cheng, H., Fu, J.H., et al. Zernike phase plate cryoelectron microscopy facilitates single particle analysis of unstained asymmetric protein complexes. Structure 18 (2010), 17–27.
-
(2010)
Structure
, vol.18
, pp. 17-27
-
-
Chang, W.H.1
Chiu, M.T.K.2
Chen, C.Y.3
Yen, C.F.4
Lin, Y.C.5
Weng, Y.P.6
Chang, J.C.7
Wu, Y.M.8
Cheng, H.9
Fu, J.H.10
-
30
-
-
79955669566
-
Accurate modeling of single-particle cryo-EM images quantitates the benefits expected from using Zernike phase contrast
-
Hall, R.J., Nogales, E., Glaeser, R.M., Accurate modeling of single-particle cryo-EM images quantitates the benefits expected from using Zernike phase contrast. J Struct Biol 174 (2011), 468–475.
-
(2011)
J Struct Biol
, vol.174
, pp. 468-475
-
-
Hall, R.J.1
Nogales, E.2
Glaeser, R.M.3
-
31
-
-
38349081491
-
Single particle analysis based on Zernike phase contrast transmission electron microscopy
-
Danev, R., Nagayama, K., Single particle analysis based on Zernike phase contrast transmission electron microscopy. J Struct Biol 161 (2008), 211–218.
-
(2008)
J Struct Biol
, vol.161
, pp. 211-218
-
-
Danev, R.1
Nagayama, K.2
-
32
-
-
78951479560
-
Seeing the portal in herpes simplex virus type 1 B capsids
-
Rochat, R.H., Liu, X., Murata, K., Nagayama, K., Rixon, F.J., Chiu, W., Seeing the portal in herpes simplex virus type 1 B capsids. J Virol 85 (2011), 1871–1874.
-
(2011)
J Virol
, vol.85
, pp. 1871-1874
-
-
Rochat, R.H.1
Liu, X.2
Murata, K.3
Nagayama, K.4
Rixon, F.J.5
Chiu, W.6
-
33
-
-
84968725663
-
Cryo-EM single particle analysis with the Volta phase plate
-
Danev, R., Baumeister, W., Cryo-EM single particle analysis with the Volta phase plate. Elife, 5, 2016.
-
(2016)
Elife
, vol.5
-
-
Danev, R.1
Baumeister, W.2
-
34
-
-
85011422346
-
Using the Volta phase plate with defocus for cryo-EM single particle analysis
-
This work describes a single particle approach which combines the Volta phase plate with a small amount of defocus and demonstrates its ability to reach resolutions in the 2 Å range.
-
34•• Danev, R., Tegunov, D., Baumeister, W., Using the Volta phase plate with defocus for cryo-EM single particle analysis. Elife, 2017, 6 This work describes a single particle approach which combines the Volta phase plate with a small amount of defocus and demonstrates its ability to reach resolutions in the 2 Å range.
-
(2017)
Elife
, pp. 6
-
-
Danev, R.1
Tegunov, D.2
Baumeister, W.3
-
35
-
-
84961367858
-
Volta phase plate cryo-EM of the small protein complex Prx3
-
Khoshouei, M., Radjainia, M., Phillips, A.J., Gerrard, J.A., Mitra, A.K., Plitzko, J.M., Baumeister, W., Danev, R., Volta phase plate cryo-EM of the small protein complex Prx3. Nat Commun, 7, 2016, 10534.
-
(2016)
Nat Commun
, vol.7
, pp. 10534
-
-
Khoshouei, M.1
Radjainia, M.2
Phillips, A.J.3
Gerrard, J.A.4
Mitra, A.K.5
Plitzko, J.M.6
Baumeister, W.7
Danev, R.8
-
36
-
-
84991368997
-
3.9 angstrom structure of the nucleosome core particle determined by phase-plate cryo-EM
-
Chua, E.Y.D., Vogirala, V.K., Inian, O., Wong, A.S.W., Nordenskiold, L., Plitzko, J.M., Danev, R., Sandin, S., 3.9 angstrom structure of the nucleosome core particle determined by phase-plate cryo-EM. Nucleic Acids Res 44 (2016), 8013–8019.
-
(2016)
Nucleic Acids Res
, vol.44
, pp. 8013-8019
-
-
Chua, E.Y.D.1
Vogirala, V.K.2
Inian, O.3
Wong, A.S.W.4
Nordenskiold, L.5
Plitzko, J.M.6
Danev, R.7
Sandin, S.8
-
37
-
-
85011369030
-
Cryo-EM structure of haemoglobin at 3.2 A determined with the Volta phase plate
-
With the help of the Volta phase plate the authors succeeded in determining the structure of hemoglobin at near-atomic resolution. Currently, this result represents the smallest protein solved to near-atomic resolution by cryo-EM single particle analysis.
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37• Khoshouei, M., Radjainia, M., Baumeister, W., Danev, R., Cryo-EM structure of haemoglobin at 3.2 A determined with the Volta phase plate. bioRxiv, 2016, 10.1101/087841 With the help of the Volta phase plate the authors succeeded in determining the structure of hemoglobin at near-atomic resolution. Currently, this result represents the smallest protein solved to near-atomic resolution by cryo-EM single particle analysis.
-
(2016)
bioRxiv
-
-
Khoshouei, M.1
Radjainia, M.2
Baumeister, W.3
Danev, R.4
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