SERS-based genetic assay for amplification-free detection of prostate cancer specific PCA3 mimic DNA

Sensors and Actuators, B: Chemical

Volumn 251, Issue , 2017, Pages 302-309

  Yu, Jimin ^a   Jeon, Jinhyeok ^a   Choi, Namhyun ^a   Lee, Jin Oh ^b   Kim, Young Pil ^b   Choo, Jaebum ^a  

^a Hanyang University   (South Korea)

^b Hanyang University   (South Korea)

Author keywords

Amplification free DNA detection; Hollow gold nanospheres; Polymerase chain reaction (PCR); Prostate cancer antigen 3 (PCA3); Surface enhanced Raman scattering

Indexed keywords

ANTIGENS; DIAGNOSIS; DISEASES; DNA; DNA SEQUENCES; RAMAN SCATTERING; SURFACE SCATTERING; UROLOGY;

DNA DETECTION; GOLD NANOSPHERES; HIGHLY SENSITIVE DETECTIONS; HYBRIDIZATION REACTIONS; NUCLEOTIDE SEQUENCES; ORDERS OF MAGNITUDE; PROSTATE CANCERS; SURFACE ENHANCED RAMAN SCATTERING (SERS);

POLYMERASE CHAIN REACTION;

EID: 85019370390     PISSN: 09254005     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.snb.2017.05.039     Document Type: Article

References (34)

1. Donnelly, P., Progress and challenges in genome-wide association studies in humans. Nature 456 (2008), 728–731.
2. Tsai, S.Q., Iafrate, A.J., Joung, J.K., Genome editing: a tool for research and therapy: towards a functional understanding of variants for molecular diagnostics using genome editing. Nat. Med. 20 (2014), 1103–1104.
3. Niemz, A., Ferguson, T.M., Boyle, D.S., Point-of-care nucleic acid testing for infectious diseases. Trends Biotechnol. 29 (2011), 240–250.
4. Thomson, D.A., Tee, E.H., Tran, N.T., Monteiro, M.J., Cooper, M.A., Oligonucleotide and polymer functionalized nanoparticles for amplification-free detection of DNA. Biomacromolecules 13 (2012), 1981–1989.
5. Adamski, M.G., Gumann, P., Baird, A.E., A method for quantitative analysis of standard and high-throughput qPCR expression data based on input sample quantity. PLOS ONE, 9, 2014, e103917.
6. Chen, L., Lee, S., Lee, M., Lim, C., Choo, J., Park, J.Y., Lee, S., Joo, S.-W., Lee, K.-H., Choi, Y.-W., DNA hybridization detection in a microfluidic channel using two fluorescently labelled nucleic acid probes. Biosens. Bioelectron. 23 (2008), 1878–1882.
7. Thomson, D.A., Dimitrov, K., Cooper, M.A., Amplification free detection of herpes simplex virus DNA. Analyst 136 (2011), 1599–1607.
8. Lam, M.K., Gadzikwa, T., Nguyen, T., Kausar, A., Alladin-Mustan, B.S., Sikder, M.D., Gibbs-Davis, J.M., Tuning toehold length and temperature to achieve rapid, colorimetric detection of DNA from the disassembly of DNA–gold nanoparticle aggregates. Langmuir 32 (2016), 1585–1590.
9. Mao, X., Liu, S., Yang, C., Liu, F., Wang, K., Chen, G., Colorimetric detection of hepatitis B virus (HBV) DNA based on DNA-templated copper nanoclusters. Anal. Chim. Acta 909 (2016), 101–108.
10. Jin, Z., Geißler, D., Qiu, X., Wegner, K.D., Hildebrandt, N., A rapid, amplification-free, and sensitive diagnostic assay for single-step multiplexed fluorescence detection of microRNA. Angew. Chem. Int. Ed. 54 (2015), 10024–10029.
11. Mayr, R., Haider, M., Thünauer, R., Haselgrübler, T., Schütz, G.J., Sonnleitner, A., Hesse, J., A microfluidic platform for transcription-and amplification-free detection of zepto-mole amounts of nucleic acid molecules. Biosens. Bioelectron. 78 (2016), 1–6.
12. Dong, H., Meng, X., Dai, W., Cao, Y., Lu, H., Zhou, S., Zhang, X., Highly sensitive and selective microRNA detection based on DNA-bio-bar-code and enzyme-assisted strand cycle exponential signal amplification. Anal. Chem. 87 (2015), 4334–4340.
13. Nam, J.-M., Stoeva, S.I., Mirkin, C.A., Bio-bar-code-based DNA detection with PCR-like sensitivity. J. Am. Chem. Soc. 126 (2004), 5932–5933.
14. Sun, Y., Ren, Q., Liu, B., Qin, Y., Zhao, S., Enzyme-free and sensitive electrochemical determination of the FLT3 gene based on a dual signal amplified strategy: controlled nanomaterial multilayers and a target-catalyzed hairpin assembly. Biosens. Bioelectron. 78 (2016), 7–13.
15. Wang, Y., Jiang, L., Leng, Q., Wu, Y., He, X., Wang, K., Electrochemical sensor for glutathione detection based on mercury ion triggered hybridization chain reaction signal amplification. Biosens. Bioelectron. 77 (2016), 914–920.
16. Chon, H., Lee, S., Son, S.W., Oh, C.H., Choo, J., Highly sensitive immunoassay of lung cancer marker carcinoembryonic antigen using surface-enhanced Raman scattering of hollow gold nanospheres. Anal. Chem. 81 (2009), 3029–3034.
17. Chon, H., Lee, S., Yoon, S.-Y., Chang, S.-I., Lim, D.W., Choo, J., Simultaneous immunoassay for the detection of two lung cancer markers using functionalized SERS nanoprobes. Chem. Commun. 47 (2011), 12515–12517.
18. Kneipp, K., Kneipp, H., Itzkan, I., Dasari, R.R., Feld, M.S., Ultrasensitive chemical analysis by Raman spectroscopy. Chem. Rev. 99 (1999), 2957–2976.
19. Nie, S., Emory, S.R., Probing single molecules and single nanoparticles by surface-enhanced Raman scattering. Science 275 (1997), 1102–1106.
20. Yoon, J., Choi, N., Ko, J., Kim, K., Lee, S., Choo, J., Highly sensitive detection of thrombin using SERS-based magnetic aptasensors. Biosens. Bioelectron. 47 (2013), 62–67.
21. Cao, Y.C., Jin, R., Mirkin, C.A., Nanoparticles with Raman spectroscopic fingerprints for DNA and RNA detection. Science 297 (2002), 1536–1540.
22. Li, X., Zheng, F., Ren, R., Detecting miRNA by producing RNA: a sensitive assay that combines rolling-circle DNA polymerization and rolling circle transcription. Chem. Commun. 51 (2015), 11976–11979.
23. Morla-Folch, J., Xie, H.n., Gisbert-Quilis, P., Pedro, S.G.d., Pazos-Perez, N., Alvarez-Puebla, R.A., Guerrini, L., Ultrasensitive direct quantification of nucleobase modifications in DNA by surface-enhanced Raman scattering: the case of cytosine. Angew. Chem. Int. Ed. 54 (2015), 13650–13654.
24. Zhang, H., Harpster, M.H., Park, H.J., Johnson, P.A., Wilson, W.C., Surface-enhanced Raman scattering detection of DNA derived from the West Nile virus genome using magnetic capture of Raman-active gold nanoparticles. Anal. Chem. 83 (2010), 254–260.
25. Zhang, H., Harpster, M.H., Wilson, W.C., Johnson, P.A., Surface-enhanced Raman scattering detection of DNAs derived from virus genomes using Au-coated paramagnetic nanoparticles. Langmuir 28 (2012), 4030–4037.
26. Schwartzberg, A.M., Olson, T.Y., Talley, C.E., Zhang, J.Z., Synthesis, characterization, and tunable optical properties of hollow gold nanospheres. J. Phys. Chem. B 110 (2006), 19935–19944.
27. Schwartzberg, A.M., Oshiro, T.Y., Zhang, J.Z., Huser, T., Talley, C.E., Improving nanoprobes using surface-enhanced Raman scattering from 30-nm hollow gold particles. Anal. Chem. 78 (2006), 4732–4736.
28. Bussemakers, M.J., van Bokhoven, A., Verhaegh, G.W., Smit, F.P., Karthaus, H.F., Schalken, J.A., Debruyne, F.M., Ru, N., Isaacs, W.B., DD3: a new prostate-specific gene, highly overexpressed in prostate cancer. Cancer Res. 59 (1999), 5975–5979.
29. De Kok, J.B., Verhaegh, G.W., Roelofs, R.W., Hessels, D., Kiemeney, L.A., Aalders, T.W., Swinkels, D.W., Schalken, J.A., DD3PCA3, a very sensitive and specific marker to detect prostate tumors. Cancer Res. 62 (2002), 2695–2698.
30. Groskopf, J., Aubin, S.M., Deras, I.L., Blase, A., Bodrug, S., Clark, C., Brentano, S., Mathis, J., Pham, J., Meyer, T., APTIMA PCA3 molecular urine test: development of a method to aid in the diagnosis of prostate cancer. Clin. Chem. 52 (2006), 1089–1095.
31. Sioss, J.A., Bhiladvala, R.B., Pan, W., Li, M., Patrick, S., Xin, P., Dean, S.L., Keating, C.D., Mayer, T.S., Clawson, G.A., Nanoresonator chip-based RNA sensor strategy for detection of circulating tumor cells: response using PCA3 as a prostate cancer marker. Nanomed. Nanotechnol. Biol. 8 (2012), 1017–1025.
32. Xu, S., Yuan, H., Xu, A., Wang, J., Wu, L., Rapid synthesis of stable and functional conjugates of DNA/gold nanoparticles mediated by Tween 80. Langmuir 27 (2011), 13629–13634.
33. Tao, Z., Shen, M., Zheng, Y., Mao, X., Chen, Z., Yin, Y., Yu, K., Weng, Z., Xie, H., Li, C., Wu, X., Hu, Y., Zhang, X., Wang, O., Song, Q., Yu, Z., PCA gene expression in prostate cancer tissue in a Chinese population: quantification by real-time FQ-RT-PCR based on exon of PCA3. Exp. Mol. Pathol. 89 (2010), 58–62.
34. Väänänen, R.-M., Rissanen, M., Kauko, O., Junnila, S., Väisänen, V., Nurmi, J., Alanen, K., Nurmi, M., Pettersson, K., Quantitative real-time RT-PCR assay for PCA3. Clin. Biochem. 41 (2008), 103–108.