Surface-enhanced Raman scattering detection of DNAs derived from virus genomes using au-coated paramagnetic nanoparticles

Langmuir

Volumn 28, Issue 8, 2012, Pages 4030-4037

  Zhang, Hao ^a   Harpster, Mark H ^a   Wilson, William C ^b   Johnson, Patrick A ^a  

^a UNIVERSITY OF WYOMING   (United States)

^b GRAIN MARKETING AND PRODUCTION RESEARCH CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIMETALLIC COMPOSITIONS; BIO-SEPARATION; DNA DETECTION; DNA TARGETS; DYE COMPOUND; ERYTHROSIN B; FEVER VIRUS; HYBRIDIZATION REACTIONS; LIMIT OF DETECTION; MALACHITE GREEN; MULTIPLEXED DETECTION; QUANTITATIVE DETECTION; RAMAN INSTRUMENTATION; RIFT VALLEY; RNA GENOME; SELECTIVE REMOVAL; SERS SUBSTRATE; SHORT PERIODS; SINGLE-PARTICLE; SURFACE-ENHANCED RAMAN SCATTERING; UV-VIS SPECTROSCOPY; WEST NILE VIRUS;

ASSAYS; DNA; GENES; GOLD; MULTIPLEXING; NANOMAGNETICS; NANOPARTICLES; PARAMAGNETIC MATERIALS; PARAMAGNETISM; PROBES; RAMAN SCATTERING; RNA; SUBSTRATES; ULTRAVIOLET SPECTROSCOPY; ULTRAVIOLET VISIBLE SPECTROSCOPY; VIRUSES; X RAY DIFFRACTION;

COMPUTER VIRUSES;

DNA; GOLD; METAL NANOPARTICLE;

ARTICLE; CHEMISTRY; GENETICS; METHODOLOGY; NANOTECHNOLOGY; RAMAN SPECTROMETRY; VIRUS GENOME;

DNA; GENOME, VIRAL; GOLD; METAL NANOPARTICLES; NANOTECHNOLOGY; SPECTRUM ANALYSIS, RAMAN;

EID: 84863229566     PISSN: 07437463     EISSN: 15205827     Source Type: Journal    
DOI: 10.1021/la204890t     Document Type: Article

References (55)

1. Yin, J. Q.; Zhao, R. C.; Morris, K. V. Trends Biotechnol. 2008, 26, 70-76
2. Miller, M. B.; Tang, Y.-W. Clin. Microbiol. Rev. 2009, 22, 611-633
3. Roepman, P. Bioanalysis 2010, 2, 249-262
4. Mehta, A. D.; Rief, M.; Spudich, J. A. J. Biol. Chem. 1999, 274, 14517-14520
5. Larmour, I. A.; Graham, D. Analyst 2011, 136, 3831-3853
6. McNay, G.; Eustace, D.; Smith, W. E.; Faulds, K.; Graham, D. Appl. Spectrosc. 2011, 65, 825-837
7. Waggoner, P. S.; Craighead, H. G. Lab Chip 2007, 10, 1238-1255
8. Cagnin, S.; Caraballo, M.; Guiducci, C.; Martini, P.; Ross, M.; SantaAna, M.; Danley, D.; West, T.; Lanfranchi, G. Sensors 2009, 9, 3122-3148
9. Sassolas, A.; Leca-Bouvier, B. D.; Blum, L. J. Chem. Rev. 2008, 108, 109-139
10. Yuan, W.; Ho, H. P.; Lee, R.; Kong, S. Appl. Opt. 2009, 48, 4329-4337
11. Peng, H.; Miller, B. L. Analyst 2011, 136, 436-447
12. Braun, G.; Lee, S. J.; Dante, M.; Nguyen, T.-Q.; Moskovits, M.; Reich, N. J. Am. Chem. Soc. 2007, 129, 6378-6379
13. Faulds, K.; Jarvis, R.; Smith, W. E.; Graham, D.; Goodacre, R. Analyst 2008, 133, 1505-1512
14. Dieringer, J. A.; McFarland, A. D.; Shah, N. C.; Stuart, D. A.; Whitney, A. V.; Yonzon, C. R.; Young, M. A.; Zhang, X.; Van Duyne, R. P. Faraday Discuss. 2006, 132, 9-26
15. Tong, L.; Zhu, T.; Liu, Z. Chem. Soc. Rev. 2011, 40, 1296-1304
16. Culha, M.; Stokes, D.; Allain, L. R.; Vo-Dinh, T. Anal. Chem. 2003, 75, 6196-6201
17. Sun, L.; Yu, C.; Irudayaraj, J. Anal. Chem. 2007, 79, 3981-3988
18. Fabris, L.; Dante, M.; Braun, G.; Lee, S. J.; Reich, N. O.; Moskovits, M.; Nguyen, T.-Q.; Bazan, G. C. J. Am. Chem. Soc. 2007, 129, 6086-6087
19. Fang, C.; Agarwal, A.; Duddharajum, K. D.; Khalid, N. Z.; Salim, S. M.; Widjaja, E.; Garlan, M. V.; Balasubramanian, N.; Kwong, D.-L. Biosens. Bioelectron. 2008, 24, 216-221
20. Huh, Y. S.; Chung, A. J.; Cordevez, B.; Erickson, D. Lab Chip 2009, 9, 433-439
21. Hu, J.; Zheng, P.-C.; Jiang, J.-H.; Shen, G.-L.; Yu, R.-Q.; Liu, G.-K. Analyst 2010, 135, 1084-1089
22. Graham, D.; Thompson, D. G.; Smith, W. E.; Faulds, K. Nat. Nanotechnol. 2008, 3, 548-551
23. Qian, X.; Zhou, X.; Nie, S. J. Am. Chem. Soc. 2008, 130, 14934-14935
24. Thuy, N. T. B.; Yokogawa, R.; Yoshimura, Y.; Fujomoto, K.; Koyano, M.; Maenosono, S. Analyst 2010, 135, 595-602
25. Jungell-Nortamo, A.; Syvanen, A. C.; Luoma, P.; Soderlund, H. Mol. Cell. Probes 1988, 2, 281-8
26. Erickson, D.; Li, D.; Krull, U. J. Anal. Biochem. 2003, 317, 186-200
27. Pankhurst, Q. A.; Connolly, J.; Jones, S. K.; Dobson, J. J. Phys. D: Appl. Phys. 2003, 36, R167-R181
28. Liang, Y.; Gong, J. L.; Huang, Y.; Zheng, Y.; Jiang, J.-H.; Shen, G.-L.; Yu, R.-Q. Talanta 2007, 72, 443-449
29. Zhang, H.; Harpster, M. H.; Park, H. J.; Wilson, W. C.; Johnson, P. A. Anal. Chem. 2011, 83, 254-260
30. Sha, M. Y.; Xu, H.; Natan, M. J.; Cromer, R. J. Am. Chem. Soc. 2009, 130, 17214-17215
31. Wang, Y.; Ravindranath, S.; Irudayaraj, J. Anal. Bioanal. Chem. 2011, 399, 1271-1278
32. Gong, J.-L.; Liang, Y.; Huang, Y.; Chen, J.-W.; Jiang, J.-H.; Shen, G.-L.; Yu, R.-Q. Biosens. Bioelectron. 2007, 22, 1501-1507
33. Chon, H.; Lee, S.; Son, S. W.; Oh, C. H.; Choo, J. Anal. Chem. 2009, 81, 3020-3034
34. Lim, I-I. S.; Njoki, P. J.; Park, H.-Y.; Wang, X.; Wang, L.; Mott, D.; Zhong, C.-J. Nanotechnology 2008, 19 (305102) 1-11
35. Bao, F.; Yao, J.-L.; Gu, R.-A. Langmuir 2009, 25, 10782-10787
36. Qui, S.; Xu, L.; Cui, Y.-R.; Deng, Q.-P.; Wang, W.; Chen, H.-Z.; Zhang, X.-X. Talanta 2010, 81, 819-823
37. Chun, C.; Joo, J.; Kwon, D.; Kim, C. S.; Cha, H. J.; Chung, M.-S.; Jeon, S. Chem. Commun. 2011, 47, 11047-11049
38. Guvun, B.; Basaran-Akgul, N.; Temur, E.; Tamer, U.; Boyaci, I. H. Analyst 2011, 136, 740-748
39. Brinton, M. A. Annu. Rev. Microbiol. 2002, 56, 371
40. Bird, B. H.; Khristova, M. L.; Rollin, P. E.; Ksiazek, T. G.; Nichol, S. T. J. Virol. 2007, 81, 2805
41. Sun, S.; Zeng, H.; Robinson, D. B.; Raoux, S.; Rice, P. M.; Wang, S. X.; Li, G. J. Am. Chem. Soc. 2004, 126, 273-279
42. Wang, L.; Luo, J.; Fan, Q.; Suzuki, M.; Suzuki, I. S.; Engelhard, M. H.; Lin, Y.; Kim, N.; Wang, J. Q.; Zhong, C. J. Phys. Chem. B 2005, 109, 21593-21601
43. Harpster, M. H.; Zhang, H.; Sankara-Warrier, A. K.; Ray, B. H.; Ward, T. R.; Kollmar, J. P.; Carron, K. T.; Mecham, J. O.; Corcoran, R. C.; Wilson, W. C.; Johnson, P. A. Biosens. Bioelectron. 2009, 25, 674-681
44. Park, H. J.; McConnell, J. T.; Boddohi, S.; Kipper, M. J.; Johnson, P. A. Colloids Surf., B 2010, 83, 198-203
45. Wechsler, B. A.; Lindsley, D. H.; Prewitt, C. T. Am. Mineral. 1984, 69, 754-770
46. Suh, I.-K.; Ohta, H.; Waseda, Y. J. Mater. Sci. 1988, 23, 757-760
47. Kumar, R. V.; Koltypin, Y.; Cohen, Y. S.; Cohen, Y.; Aurbach, D.; Palchik, O.; Felner, I.; Gedanken, A J. Mater. Chem. 2000, 10, 1125-1129
48. Ladd, M. F. C.; Palmer, R. A. Structure Determination by X-ray Crystallography, 3 rd ed.; Plenum Press: New York, 1993.
49. Jain, P. K.; Lee, K. S.; El-Sayed, I. H.; El-Sayed, M. A. J. Phys. Chem. B 2006, 110, 7338-7248
50. Hirayama, K. Handbook of Ultraviolet and Visible Absorption Spectra of Organic Compounds, 1 st ed.; Springer-Verlag: New York, 1967.
51. Qian, X.; Peng, X.-H.; Ansari, D. O.; Yin-Goen, Q.; Chen, G. X.; Shin, D. M.; Yang, L.; Young, A. N.; Wang, M. D.; Nie, S. Nat. Biotechnol. 2008, 26, 83-90
52. Narayanan, V. A.; Stokes, D. L.; Vo-Dinh, T. J. Raman Spectrosc. 1994, 25, 415-422
53. Justino, C. I. L.; Rocha-Santos, T. A.; Duarte, A. C. Trends Anal. Chem. 2010, 29, 1172-1183
54. Kennedy, B. J.; Spaeth, S.; Dickey, M.; Carron, K. T. J. Phys. Chem. B 1999, 103, 3640-3646
55. Kagen, M. R.; McCreery, R. L. Anal. Chem. 1994, 66, 4159-4165