Enterovirus D68 Subclade B3 Strain Circulating and Causing an Outbreak in the United States in 2016

Scientific Reports

Volumn 7, Issue 1, 2017, Pages

  Wang, Guiqing ^a,b   Zhuge, Jian ^b   Huang, Weihua ^a   Nolan, Sheila M ^b   Gilrane, Victoria L ^a   Yin, Changhong ^a   Dimitrova, Nevenka ^c   Fallon, John T ^a,b  

^a NEW YORK MEDICAL COLLEGE   (United States)

^b WESTCHESTER MEDICAL CENTER   (United States)

^c PHILIPS RESEARCH LABORATORIES   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; ENTEROVIRUS; ENTEROVIRUS INFECTION; EPIDEMIC; GENETICS; GENOTYPE; HIGH THROUGHPUT SEQUENCING; HUMAN; ISOLATION AND PURIFICATION; MOLECULAR EPIDEMIOLOGY; NASOPHARYNX; NEW YORK; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY; VIROLOGY; VIRUS GENOME;

CLUSTER ANALYSIS; DISEASE OUTBREAKS; ENTEROVIRUS; ENTEROVIRUS INFECTIONS; GENOME, VIRAL; GENOTYPE; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; MOLECULAR EPIDEMIOLOGY; NASOPHARYNX; NEW YORK; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY;

EID: 85018995930     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/s41598-017-01349-4     Document Type: Article

References (38)

1. Muir, P. et al. Molecular typing of enteroviruses: current status and future requirements. Clin Microbiol Rev 11, 202-227 (1998).
2. King, A. M. Q. B. F., Christian, P. et al. In Virus Taxonomy: Classification and Nomenclature of Viruses: Ninth Report of the International Committee on Taxonomy of Viruses (eds A. M. Q. Adams King, M. J. Carstens, E. B. & E. J. Lefkowitz) 855-880 (Academic Press 2012).
3. International Committee on Taxonomy of Viruses (ICTV). Virus taxonomy, 2015 release, http://www.ictvonline.org/virustaxonomy.asp (2015).
4. Schieble, J. H., Fox, V. L. & Lennette, E. H. A probable new human picornavirus associated with respiratory diseases. Am J Epidemiol 85, 297-310, doi: 10.1093/oxfordjournals.aje.a120693 (1967).
5. Tokarz, R. et al. Worldwide emergence of multiple clades of enterovirus 68. J Gen Virol 93, 1952-1958, doi: 10.1099/vir.0.043935-0 (2012).
6. Holm-Hansen, C. C., Midgley, S. E. & Fischer, T. K. Global emergence of enterovirus D68: a systematic review. Lancet Infect Dis 16, e64-e75, doi: 10.1016/s1473-3099(15)00543-5 (2016).
7. Khetsuriani, N. et al. Enterovirus surveillance-United States, 1970-2005. MMWR Surveill Summ 55, 1-20 (2006).
8. Imamura, T. et al. Enterovirus 68 among children with severe acute respiratory infection, the Philippines. Emerg Infect Dis 17, 1430-1435, doi: 10.3201/eid1708.101328 (2011).
9. Meijer, A. et al. Emergence and epidemic occurrence of enterovirus 68 respiratory infections in The Netherlands in 2010. Virology 423, 49-57, doi: 10.1016/j.virol.2011.11.021 (2012).
10. CDC. Clusters of acute respiratory illness associated with human enterovirus 68-Asia, Europe, and United States, 2008-2010. MMWR Morb Mortal Wkly Rep 60, 1301-1304 (2011).
11. Imamura, T. & Oshitani, H. Global reemergence of enterovirus D68 as an important pathogen for acute respiratory infections. Rev Med Virol 25, 102-14, doi: 10.1002/rmv.1820 (2014).
12. Imamura, T. et al. Molecular evolution of enterovirus 68 detected in the Philippines. PLoS One 8, e74221, doi: 10.1371/journal.pone.0074221 (2013).
13. CDC. Non-Polio Enterovirus: Enterovirus D68, http://www.cdc.gov/non-polio-enterovirus/about/ev-d68.html (Accessed on October 5, 2016) (2016).
14. Midgley, C. M. et al. Severe respiratory illness associated with a nationwide outbreak of enterovirus D68 in the USA (2014): a descriptive epidemiological investigation. Lancet Respir Med 3, 879-887, doi: 10.1016/s2213-2600(15)00335-5 (2015).
15. Greninger, A. L. et al. A novel outbreak enterovirus D68 strain associated with acute flaccid myelitis cases in the USA (2012-14): a retrospective cohort study. Lancet Infect Dis 15, 671-682, doi: 10.1016/s1473-3099(15)70093-9 (2015).
16. Messacar, K. et al. A cluster of acute flaccid paralysis and cranial nerve dysfunction temporally associated with an outbreak of enterovirus D68 in children in Colorado, USA. Lancet 385, 1662-1671, doi: 10.1016/s0140-6736(14)62457-0 (2015).
17. Sejvar, J. J. et al. Acute Flaccid Myelitis in the United States, August-December 2014: Results of Nationwide Surveillance. Clin Infect Dis 63, 737-745, doi: 10.1093/cid/ciw372 (2016).
18. CDC. Acute Flaccid Myelitis, https://www.cdc.gov/acute-flaccid-myelitis/ (Last updated: March 1, 2017; accessed on March 15, 2017).
19. Skowronski, D. M. et al. Systematic community- and hospital-based surveillance for enterovirus-D68 in three Canadian provinces, August to December 2014. Euro Surveill 20, doi: 10.2807/1560-7917.ES.2015.20.43.30047 (2015).
20. Poelman, R. et al. European surveillance for enterovirus D68 during the emerging North-American outbreak in 2014. J Clin Virol 71, 1-9, doi: 10.1016/j.jcv.2015.07.296 (2015).
21. Levy, A. et al. Enterovirus D68 disease and molecular epidemiology in Australia. J Clin Virol 69, 117-121, doi: 10.1016/j.jcv.2015.06.079 (2015).
22. Xiao, Q. et al. Prevalence and molecular characterizations of enterovirus D68 among children with acute respiratory infection in China between 2012 and 2014. Sci Rep 5, 16639, doi: 10.1038/srep16639 (2015).
23. Zhang, T. et al. Enterovirus D68-associated severe pneumonia, China, 2014. Emerg Infect Dis 21, 916-918, doi: 10.3201/eid2105.150036 (2015).
24. Knoester, M. et al. Upsurge of Enterovirus D68, the Netherlands, 2016. Emerg Infect Dis 23, 140-143, doi: 10.3201/eid2301.161313 (2017).
25. Antona, D. et al. Severe paediatric conditions linked with EV-A71 and EV-D68, France, May to October 2016. Euro Surveill 21, doi: 10.2807/1560-7917.es.2016.21.46.30402 (2016).
26. Dyrdak, R. et al. Outbreak of enterovirus D68 of the new B3 lineage in Stockholm, Sweden, August to September 2016. Euro Surveill 21, doi: 10.2807/1560-7917.es.2016.21.46.30403 (2016).
27. European Centre for Disease Prevention and Contorl. Rapid risk assessment - Enterovirus detections associated with severe neurological symptoms in children and adults in European countries. Auguest 8, 2016. Stockholm:ECDC, 1-9 (2016).
28. Ikeda, T. et al. Acute respiratory infections due to enterovirus 68 in Yamagata, Japan between 2005 and 2010. Microbiol Immunol 56, 139-143, doi: 10.1111/j.1348-0421.2012.00411.x (2012).
29. Huang, W. et al. Whole-genome sequence analysis reveals the Enterovirus D68 isolates during the United States 2014 outbreak mainly belong to a novel clade. Sci Rep 5, 15223, doi: 10.1038/srep15223 (2015).
30. Lau, S. K. et al. Enterovirus D68 infections associated with severe respiratory illness in elderly patients and emergence of a novel clade in Hong Kong. Sci Rep 6, 25147, doi: 10.1038/srep25147 (2016).
31. Gong, Y. N. et al. Molecular evolution and the global reemergence of enterovirus D68 by genome-wide analysis. Medicine (Baltimore) 95, e4416, doi: 10.1097/md.0000000000004416 (2016).
32. Du, J. et al. Analysis of Enterovirus 68 Strains from the 2014 North American outbreak reveals a new clade, indicating viral evolution. PLoS One 10, e0144208, doi: 10.1371/journal.pone.0144208 (2015).
33. Brown, B. A., Nix, W. A., Sheth, M., Frace, M. & Oberste, M. S. Seven strains of Enterovirus D68 detected in the United States during the 2014 severe respiratory disease outbreak. Genome Announc 2, e01201-14, doi: 10.1128/genomeA.01201-14 (2014).
34. Zhuge, J. et al. Evaluation of a Real-Time Reverse Transcription-PCR Assay for Detection of Enterovirus D68 in Clinical Samples from an Outbreak in New York State in 2014. J Clin Microbiol 53, 1915-1920, doi: 10.1128/JCM.00358-15 (2015).
35. Huang, W. et al. Assessing next-generation sequencing and 4 bioinformatics tools for detection of Enterovirus D68 and other respiratory viruses in clinical samples. Diagn Microbiol Infect Dis 85, 26-29, doi: 10.1016/j.diagmicrobio.2016.01.013 (2016).
36. Huang, W. et al. Complete genome sequences of nine Enterovirus D68 strains from patients of the Lower Hudson Valley, New York, 2016. Genome Announc 4, e01394-16, doi: 10.1128/genomeA.01394-16 (2016).
37. Ng, T. F. et al. Detection and Genomic Characterization of Enterovirus D68 in Respiratory Samples Isolated in the United States in 2016. Genome Announc 4, e01350-16, doi: 10.1128/genomeA.01350-16 (2016).
38. Crooks, G. E., Hon, G., Chandonia, J. M. & Brenner, S. E. WebLogo: a sequence logo generator. Genome Res 14, 1188-1190, doi: 10.1101/gr.849004 (2004).