-
1
-
-
18144406581
-
Solving the protein sequence metric problem
-
Atchley, W.R. et al. (2005) Solving the protein sequence metric problem. Proc. Natl Acad. Sci. USA, 102, 6395-6400.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 6395-6400
-
-
Atchley, W.R.1
-
2
-
-
84867436154
-
Diversity-oriented approaches for interrogating T-cell receptor repertoire, ligand recognition, and function
-
Birnbaum, M.E. et al. (2012) Diversity-oriented approaches for interrogating T-cell receptor repertoire, ligand recognition, and function. Immunol. Rev., 250, 82-101.
-
(2012)
Immunol. Rev.
, vol.250
, pp. 82-101
-
-
Birnbaum, M.E.1
-
3
-
-
84870440262
-
Application of asymmetric statistical potentials to antibodyprotein docking
-
Brenke, R. et al. (2012) Application of asymmetric statistical potentials to antibodyprotein docking. Bioinformatics, 28, 2608-2614.
-
(2012)
Bioinformatics
, vol.28
, pp. 2608-2614
-
-
Brenke, R.1
-
5
-
-
4444329364
-
Visualizing the first 50 hr of the primary immune response to a soluble antigen
-
Catron, D.M. et al. (2004) Visualizing the first 50 hr of the primary immune response to a soluble antigen. Immunity, 21, 341-347.
-
(2004)
Immunity
, vol.21
, pp. 341-347
-
-
Catron, D.M.1
-
6
-
-
0028169415
-
Public and private v beta T cell receptor repertoires against hen egg white lysozyme (HEL) in nontransgenic versus HEL transgenic mice
-
Cibotti, R. et al. (1994) Public and private V beta T cell receptor repertoires against hen egg white lysozyme (HEL) in nontransgenic versus HEL transgenic mice. J. Exp. Med., 180, 861-872.
-
(1994)
J. Exp. Med.
, vol.180
, pp. 861-872
-
-
Cibotti, R.1
-
7
-
-
84881084043
-
Quantification of total T cell receptor diversity by flow cytometry and spectratyping
-
Ciupe, S.M. et al. (2013) Quantification of total T cell receptor diversity by flow cytometry and spectratyping. BMC Immunol., 14, 35.
-
(2013)
BMC Immunol.
, vol.14
, pp. 35
-
-
Ciupe, S.M.1
-
8
-
-
78650647253
-
Broad cross-reactive TCR repertoires recognizing dissimilar Epstein-Barr and influenza a virus epitopes
-
Clute, S.C. et al. (2010) Broad cross-reactive TCR repertoires recognizing dissimilar Epstein-Barr and influenza a virus epitopes. J. Immunol., 185, 6753-6764.
-
(2010)
J. Immunol.
, vol.185
, pp. 6753-6764
-
-
Clute, S.C.1
-
11
-
-
79959353928
-
Structural basis for enabling T-cell receptor diversity within biased virus-specific CD8+ T-cell responses
-
Day, E.B. et al. (2011) Structural basis for enabling T-cell receptor diversity within biased virus-specific CD8+ T-cell responses. Proc. Natl Acad. Sci. USA, 108, 9536-9541.
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 9536-9541
-
-
Day, E.B.1
-
12
-
-
84900464915
-
Revealing individual signatures of human T cell CDR3 sequence repertoires with Kidera factors
-
Epstein, M. et al. (2014) Revealing individual signatures of human T cell CDR3 sequence repertoires with Kidera factors. PLoS One, 9, e86986.
-
(2014)
PLoS One
, vol.9
, pp. e86986
-
-
Epstein, M.1
-
13
-
-
0033036346
-
Quantitative flow cytometry for the analysis of T cell receptor Vbeta chain expression
-
Faint, J.M. et al. (1999) Quantitative flow cytometry for the analysis of T cell receptor Vbeta chain expression. J. Immunol. Methods, 225, 53-60.
-
(1999)
J. Immunol. Methods
, vol.225
, pp. 53-60
-
-
Faint, J.M.1
-
14
-
-
70349648171
-
Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing
-
Freeman, J.D. et al. (2009) Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing. Genome Res., 19, 1817-1824.
-
(2009)
Genome Res.
, vol.19
, pp. 1817-1824
-
-
Freeman, J.D.1
-
15
-
-
23744479535
-
How the T cell receptor sees antigen - A structural view
-
Garcia, K.C. and Adams, E.J. (2005) How the T cell receptor sees antigen - a structural view. Cell, 122, 333-336.
-
(2005)
Cell
, vol.122
, pp. 333-336
-
-
Garcia, K.C.1
Adams, E.J.2
-
16
-
-
33645275372
-
Naive and memory CD4+ T cell survival controlled by clonal abundance
-
Hataye, J. et al. (2006) Naive and memory CD4+ T cell survival controlled by clonal abundance. Science, 312, 114-116.
-
(2006)
Science
, vol.312
, pp. 114-116
-
-
Hataye, J.1
-
17
-
-
84957069814
-
Text categorization with support vector machines: Learning with many relevant features
-
Ndellec, C. and Rouveirol, C. (eds) Lecture Notes in Computer Science Springer, Berlin, Heidelberg
-
Joachims, T. (1998) Text categorization with support vector machines: learning with many relevant features. In: Ndellec, C. and Rouveirol, C. (eds) Machine Learning: ECML-98. Lecture Notes in Computer Science. Vol. 1398, Springer, Berlin, Heidelberg, pp. 137-142.
-
(1998)
Machine Learning: ECML-98
, vol.1398
, pp. 137-142
-
-
Joachims, T.1
-
18
-
-
0021931978
-
Statistical analysis of the physical properties of the 20 naturally occurring amino acids
-
Kidera, A. et al. (1985) Statistical analysis of the physical properties of the 20 naturally occurring amino acids. J. Protein Chem., 4, 23-55.
-
(1985)
J. Protein Chem.
, vol.4
, pp. 23-55
-
-
Kidera, A.1
-
19
-
-
77955852463
-
Human T cell memory consists mainly of unexpanded clones
-
Klarenbeek, P.L. et al. (2010) Human T cell memory consists mainly of unexpanded clones. Immunol. Lett., 133, 42-48.
-
(2010)
Immunol. Lett.
, vol.133
, pp. 42-48
-
-
Klarenbeek, P.L.1
-
20
-
-
0041965869
-
Text classification using string kernels
-
Lodhi, H. et al. (2002) Text classification using string kernels. J. Mach. Learn. Res., 2, 419444.
-
(2002)
J. Mach. Learn. Res.
, vol.2
, pp. 419444
-
-
Lodhi, H.1
-
21
-
-
0033284915
-
Object recognition from local scale-invariant features
-
IEEE International Conference on Computer Vision IEEE, Kerkyra, Greece
-
Lowe, D. (1999) Object recognition from local scale-invariant features. In: Proceedings of the Seventh IEEE International Conference on Computer Vision. Vol. 2, IEEE, Kerkyra, Greece, pp. 1150-1157.
-
(1999)
Proceedings of the Seventh
, vol.2
, pp. 1150-1157
-
-
Lowe, D.1
-
22
-
-
84907553718
-
T-cell receptor repertoires share a restricted set of public and abundant CDR3 sequences that are associated with self-related immunity
-
Madi, A. et al. (2014) T-cell receptor repertoires share a restricted set of public and abundant CDR3 sequences that are associated with self-related immunity. Genome Res., 24, 1603-1612.
-
(2014)
Genome Res.
, vol.24
, pp. 1603-1612
-
-
Madi, A.1
-
23
-
-
34547662266
-
A public T cell clonotype within a heterogeneous autoreactive repertoire is dominant in driving EAE
-
Menezes, J.S. et al. (2007) A public T cell clonotype within a heterogeneous autoreactive repertoire is dominant in driving EAE. J. Clin. Invest., 117, 2176-2185.
-
(2007)
J. Clin. Invest.
, vol.117
, pp. 2176-2185
-
-
Menezes, J.S.1
-
24
-
-
34548038390
-
Naive CD4(+) T cell frequency varies for different epitopes and predicts repertoire diversity and response magnitude
-
Moon, J.J. et al. (2007) Naive CD4(+) T cell frequency varies for different epitopes and predicts repertoire diversity and response magnitude. Immunity, 27, 203-213.
-
(2007)
Immunity
, vol.27
, pp. 203-213
-
-
Moon, J.J.1
-
25
-
-
77950376484
-
Maximum entropy models for antibody diversity
-
Mora, T. et al. (2010) Maximum entropy models for antibody diversity. Proc. Natl Acad. Sci. USA, 107, 5405-5410.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 5405-5410
-
-
Mora, T.1
-
26
-
-
84866842507
-
Chromatin conformation governs T-cell receptor j- gene segment usage
-
Ndifon, W. et al. (2012) Chromatin conformation governs T-cell receptor j- gene segment usage. Proc. Natl Acad. Sci. USA, 109, 15865-15870.
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 15865-15870
-
-
Ndifon, W.1
-
27
-
-
0028408957
-
Evidence for a superantigen in human tuberculosis
-
Ohmen, J.D. et al. (1994) Evidence for a superantigen in human tuberculosis. Immunity, 1, 35-43.
-
(1994)
Immunity
, vol.1
, pp. 35-43
-
-
Ohmen, J.D.1
-
28
-
-
0028908698
-
T cell repertoire diversity and clonal expansions in normal and clinical samples
-
Pannetier, C. et al. (1995) T cell repertoire diversity and clonal expansions in normal and clinical samples. Immunol. Today, 16, 176-181.
-
(1995)
Immunol. Today
, vol.16
, pp. 176-181
-
-
Pannetier, C.1
-
29
-
-
84873710640
-
In vitro-induced response patterns of antileukemic T cells: Characterization by spectratyping and immunophenotyping
-
Reuther, S. et al. (2013) In vitro-induced response patterns of antileukemic T cells: characterization by spectratyping and immunophenotyping. Clin. Exp. Med., 13, 29-48.
-
(2013)
Clin. Exp. Med.
, vol.13
, pp. 29-48
-
-
Reuther, S.1
-
30
-
-
77950541195
-
Comprehensive assessment of T cell receptor beta-chain diversity in alphabeta T cells
-
Robins, H.S. et al. (2009) Comprehensive assessment of T cell receptor beta-chain diversity in alphabeta T cells. Blood, 114, 4099-4107.
-
(2009)
Blood
, vol.114
, pp. 4099-4107
-
-
Robins, H.S.1
-
31
-
-
33646181088
-
How TCRs bind MHCs, peptides, and coreceptors
-
Rudolph, M.G. et al. (2006) How TCRs bind MHCs, peptides, and coreceptors. Ann. Rev. Immunol., 24, 419-466.
-
(2006)
Ann. Rev. Immunol.
, vol.24
, pp. 419-466
-
-
Rudolph, M.G.1
-
32
-
-
84876073850
-
T cell receptor variable gene repertoire in liver and peripheral blood lymphocytes of chronically hepatitis c virus-infected patients with and without mixed cryoglobulinaemia
-
Russi, S. et al. (2013) T cell receptor variable gene repertoire in liver and peripheral blood lymphocytes of chronically hepatitis c virus-infected patients with and without mixed cryoglobulinaemia. Clin. Exp. Immunol., 172, 254-262.
-
(2013)
Clin. Exp. Immunol.
, vol.172
, pp. 254-262
-
-
Russi, S.1
-
33
-
-
76049105937
-
High-resolution protein complexes from integrating genomic information with molecular simulation
-
Schug, A. et al. (2009) High-resolution protein complexes from integrating genomic information with molecular simulation. Proc. Natl Acad. Sci. USA, 106, 22124-22129.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 22124-22129
-
-
Schug, A.1
-
34
-
-
84874671063
-
Decombinator: A tool for fast, efficient gene assignment in T-cell receptor sequences using a finite state machine
-
Thomas, N. et al. (2013) Decombinator: a tool for fast, efficient gene assignment in T-cell receptor sequences using a finite state machine. Bioinformatics, 29, 542-550.
-
(2013)
Bioinformatics
, vol.29
, pp. 542-550
-
-
Thomas, N.1
-
35
-
-
79955022207
-
A mechanism for TCR sharing between T cell subsets and individuals revealed by pyrosequencing
-
Venturi, V. et al. (2011) A mechanism for TCR sharing between T cell subsets and individuals revealed by pyrosequencing. J. Immunol., 186, 4285-4294.
-
(2011)
J. Immunol.
, vol.186
, pp. 4285-4294
-
-
Venturi, V.1
-
36
-
-
65649122270
-
High-throughput sequencing of the zebrafish antibody repertoire
-
Weinstein, J.A. et al. (2009) High-throughput sequencing of the zebrafish antibody repertoire. Science, 324, 807-810.
-
(2009)
Science
, vol.324
, pp. 807-810
-
-
Weinstein, J.A.1
|