메뉴 건너뛰기




Volumn 136, Issue 5, 2017, Pages 575-590

Toward a consensus on SNP and STR mutation rates on the human Y-chromosome

Author keywords

[No Author keywords available]

Indexed keywords

ANCIENT DNA; MICROSATELLITE DNA;

EID: 85018224424     PISSN: 03406717     EISSN: 14321203     Source Type: Journal    
DOI: 10.1007/s00439-017-1805-8     Document Type: Review
Times cited : (50)

References (57)
  • 2
    • 84957824670 scopus 로고    scopus 로고
    • Life history effects on the molecular clock of autosomes and sex chromosomes
    • COI: 1:CAS:528:DC%2BC28Xhtlamtbk%3D, PID: 26811451
    • Amster G, Sella G (2016) Life history effects on the molecular clock of autosomes and sex chromosomes. Proc Natl Acad Sci USA 113(6):1588–1593. doi:10.1073/pnas.1515798113
    • (2016) Proc Natl Acad Sci USA , vol.113 , Issue.6 , pp. 1588-1593
    • Amster, G.1    Sella, G.2
  • 6
    • 78650067593 scopus 로고    scopus 로고
    • Mutation rate estimates for 110 Y-chromosome STRs combining population and father–son pair data
    • PID: 20823913
    • Burgarella C, Navascue M (2011) Mutation rate estimates for 110 Y-chromosome STRs combining population and father–son pair data. Eur J Hum Genet 19:70–75
    • (2011) Eur J Hum Genet , vol.19 , pp. 70-75
    • Burgarella, C.1    Navascue, M.2
  • 7
    • 58849132596 scopus 로고    scopus 로고
    • Accuracy of molecular dating with the rho statistic: deviations from coalescent expectations under a range of demographic models
    • Cox MP (2008) Accuracy of molecular dating with the rho statistic: deviations from coalescent expectations under a range of demographic models. Hum. Biol 80:335–357. doi:10.3378/1534-6617-80.4.335
    • (2008) Hum. Biol , vol.80 , pp. 335-357
    • Cox, M.P.1
  • 8
    • 84943820285 scopus 로고    scopus 로고
    • Genetic data and de novo mutation rates in father–son pairs of 23 Y-STR loci in Southern Brazil population
    • PID: 25391811
    • Da Fré NN, Rodenbusch R, Gastaldo AZ, Hanson E, Ballantyne J, Alho CS (2015) Genetic data and de novo mutation rates in father–son pairs of 23 Y-STR loci in Southern Brazil population. Int J Legal Med 129:1221–1223
    • (2015) Int J Legal Med , vol.129 , pp. 1221-1223
    • Da Fré, N.N.1    Rodenbusch, R.2    Gastaldo, A.Z.3    Hanson, E.4    Ballantyne, J.5    Alho, C.S.6
  • 10
    • 84857052816 scopus 로고    scopus 로고
    • Mitochondrial DNA and Y chromosome variation provides evidence for a recent common ancestry between native Americans and indigenous Altaians
    • COI: 1:CAS:528:DC%2BC38XitFyit70%3D, PID: 22281367
    • Dulik MC, Zhadanov SI, Osipova LP, Askapuli A, Gau L, Gokcumen O, Rubinstein S, Schurr TG (2012) Mitochondrial DNA and Y chromosome variation provides evidence for a recent common ancestry between native Americans and indigenous Altaians. Am J Hum Genet 90(2):229–246
    • (2012) Am J Hum Genet , vol.90 , Issue.2 , pp. 229-246
    • Dulik, M.C.1    Zhadanov, S.I.2    Osipova, L.P.3    Askapuli, A.4    Gau, L.5    Gokcumen, O.6    Rubinstein, S.7    Schurr, T.G.8
  • 11
    • 26044441323 scopus 로고    scopus 로고
    • Cross-cultural estimation of the human generation interval for use in genetics-based population divergence studies
    • Fenner JN (2005) Cross-cultural estimation of the human generation interval for use in genetics-based population divergence studies. Am J Phys Anthropol 423:415–423
    • (2005) Am J Phys Anthropol , vol.423 , pp. 415-423
    • Fenner, J.N.1
  • 12
    • 0029794184 scopus 로고    scopus 로고
    • Origin and evolution of native American mtDNA variation: a reappraisal
    • COI: 1:CAS:528:DyaK28Xmt1KqsL8%3D, PID: 8808611
    • Forster P, Harding R, Torroni A, Bandelt H (1996) Origin and evolution of native American mtDNA variation: a reappraisal. Am J Hum Genet 59:935–945
    • (1996) Am J Hum Genet , vol.59 , pp. 935-945
    • Forster, P.1    Harding, R.2    Torroni, A.3    Bandelt, H.4
  • 16
    • 67349226460 scopus 로고    scopus 로고
    • Forensic Science International: genetics Mutation rates at Y chromosome short tandem repeats in Texas populations
    • COI: 1:CAS:528:DC%2BC3cXjsFCjsbw%3D, PID: 19414166
    • Ge J, Budowle B, Aranda XG, Planz JV, Eisenberg AJ, Chakraborty R (2009) Forensic Science International: genetics Mutation rates at Y chromosome short tandem repeats in Texas populations. Forensic Sci Int Genet 3:179–184
    • (2009) Forensic Sci Int Genet , vol.3 , pp. 179-184
    • Ge, J.1    Budowle, B.2    Aranda, X.G.3    Planz, J.V.4    Eisenberg, A.J.5    Chakraborty, R.6
  • 17
    • 74049117635 scopus 로고    scopus 로고
    • Comprehensive mutation analysis of 17 Y-chromosomal short tandem repeat polymorphisms included in the AmpF l STR Yfiler PCR amplification kit
    • PID: 19322579
    • Goedbloed M, Vermeulen M, Fang RN, Lembring M (2009) Comprehensive mutation analysis of 17 Y-chromosomal short tandem repeat polymorphisms included in the AmpF l STR Yfiler PCR amplification kit. Int J Legal Med 123:471–482
    • (2009) Int J Legal Med , vol.123 , pp. 471-482
    • Goedbloed, M.1    Vermeulen, M.2    Fang, R.N.3    Lembring, M.4
  • 18
    • 0028888949 scopus 로고
    • An evaluation of genetic distances for use with microsatellite loci
    • COI: 1:STN:280:DyaK2M3itVKrtA%3D%3D, PID: 7705647
    • Goldstein DB, Ruiz Linares A, Cavalli-Sforza LL, Feldman MW (1995a) An evaluation of genetic distances for use with microsatellite loci. Genetics 139(1):463–471
    • (1995) Genetics , vol.139 , Issue.1 , pp. 463-471
    • Goldstein, D.B.1    Ruiz Linares, A.2    Cavalli-Sforza, L.L.3    Feldman, M.W.4
  • 19
    • 0029089957 scopus 로고
    • Genetic absolute dating based on microsatellites and the origin of modern humans
    • COI: 1:CAS:528:DyaK2MXntVSksro%3D, PID: 7624310
    • Goldstein DB, Ruiz Linares A, Cavalli-Sforza LL, Feldman MW (1995b) Genetic absolute dating based on microsatellites and the origin of modern humans. Proc Natl Acad Sci USA 92(15):6723–6727
    • (1995) Proc Natl Acad Sci USA , vol.92 , Issue.15 , pp. 6723-6727
    • Goldstein, D.B.1    Ruiz Linares, A.2    Cavalli-Sforza, L.L.3    Feldman, M.W.4
  • 22
    • 31444442779 scopus 로고    scopus 로고
    • Molecular clocks: when times are a-changin
    • COI: 1:CAS:528:DC%2BD28XhtV2ls70%3D, PID: 16356585
    • Ho SYW, Larson G (2006) Molecular clocks: when times are a-changin. Trends Genet 22:79–83
    • (2006) Trends Genet , vol.22 , pp. 79-83
    • Ho, S.Y.W.1    Larson, G.2
  • 26
    • 30144440081 scopus 로고    scopus 로고
    • Placing confidence limits on the molecular age of the human—chimpanzee divergence
    • COI: 1:CAS:528:DC%2BD28XivVyrtQ%3D%3D, PID: 16365310
    • Kumar S, Filipski A, Swarna V, Walker A, Hedges SB (2005) Placing confidence limits on the molecular age of the human—chimpanzee divergence. Proc Natl Acad Sci USA 102:18842–18847
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 18842-18847
    • Kumar, S.1    Filipski, A.2    Swarna, V.3    Walker, A.4    Hedges, S.B.5
  • 30
    • 84995579243 scopus 로고    scopus 로고
    • Human germline mutation and the erratic evolutionary clock
    • PID: 27760127
    • Moorjani P, Gao Z, Przeworski M (2016) Human germline mutation and the erratic evolutionary clock. PLoS Biol 14(10):e2000744. doi:10.1371/journal.pbio.2000744
    • (2016) PLoS Biol , vol.14 , Issue.10
    • Moorjani, P.1    Gao, Z.2    Przeworski, M.3
  • 35
    • 0033842913 scopus 로고    scopus 로고
    • mtDNA Variation among Greenland Eskimos: the Edge of the Beringian Expansion
    • COI: 1:CAS:528:DC%2BD3cXms1Wgtrw%3D, PID: 10924403
    • Saillard J, Forster P, Lynnerup N, Nørby S (2000) mtDNA Variation among Greenland Eskimos: the Edge of the Beringian Expansion. Am J Hum Genet 67:718–726
    • (2000) Am J Hum Genet , vol.67 , pp. 718-726
    • Saillard, J.1    Forster, P.2    Lynnerup, N.3    Nørby, S.4
  • 36
    • 84895510940 scopus 로고    scopus 로고
    • An unbiased resource of novel SNP markers provides a new chronology for the human Y chromosome and reveals a deep phylogenetic structure in Africa
    • COI: 1:CAS:528:DC%2BC2cXkvVyqsLY%3D, PID: 24395829
    • Scozzari R, Massaia A, Trombetta B, Bellusci G, Myres NM, Novelletto A, Cruciani F (2014) An unbiased resource of novel SNP markers provides a new chronology for the human Y chromosome and reveals a deep phylogenetic structure in Africa. Genome Res 24(3):535–544
    • (2014) Genome Res , vol.24 , Issue.3 , pp. 535-544
    • Scozzari, R.1    Massaia, A.2    Trombetta, B.3    Bellusci, G.4    Myres, N.M.5    Novelletto, A.6    Cruciani, F.7
  • 40
    • 84857766731 scopus 로고    scopus 로고
    • Genetic aspects of genealogy
    • PID: 22332404
    • Tetushkin E (2011) Genetic aspects of genealogy. Genetika 47(11):1451–1472
    • (2011) Genetika , vol.47 , Issue.11 , pp. 1451-1472
    • Tetushkin, E.1
  • 41
    • 0034691122 scopus 로고    scopus 로고
    • Recent common ancestry of human Y chromosomes: evidence from DNA sequence data
    • COI: 1:CAS:528:DC%2BD3cXksVKiu78%3D, PID: 10861004
    • Thomson R, Pritchard JK, Shen P, Oefner PJ, Feldman MW (2000) Recent common ancestry of human Y chromosomes: evidence from DNA sequence data. Proc Natl Acad Sci USA 97:7360–7365
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 7360-7365
    • Thomson, R.1    Pritchard, J.K.2    Shen, P.3    Oefner, P.J.4    Feldman, M.W.5
  • 42
    • 84941975657 scopus 로고    scopus 로고
    • Regional differences in the accumulation of SNPs on the male-specific portion of the human Y chromosome replicate autosomal patterns: implications for genetic dating
    • Trombetta B, Atanasio ED, Massaia A, Myres NM, Scozzari R, Cruciani F, Novelletto A (2015) Regional differences in the accumulation of SNPs on the male-specific portion of the human Y chromosome replicate autosomal patterns: implications for genetic dating. PLoS One 10:1–18
    • (2015) PLoS One , vol.10 , pp. 1-18
    • Trombetta, B.1    Atanasio, E.D.2    Massaia, A.3    Myres, N.M.4    Scozzari, R.5    Cruciani, F.6    Novelletto, A.7
  • 43
    • 84931565310 scopus 로고    scopus 로고
    • ® Y 23 System in a Northeast Italian population sample
    • PID: 25099381
    • ® Y 23 System in a Northeast Italian population sample. Int J Legal Med 129:725–728
    • (2015) Int J Legal Med , vol.129 , pp. 725-728
    • Turrina, S.1    Caratti, S.2    Ferrian, M.3
  • 45
    • 67849130552 scopus 로고    scopus 로고
    • Europe PMC Funders Group Improving global and regional resolution of male lineage differentiation by simple single-copy Y-chromosomal short tandem repeat polymorphisms
    • COI: 1:CAS:528:DC%2BC3cXjsFCjsrg%3D, PID: 19647704
    • Vermeulen M, Wollstein A, Van Der Gaag K, Lao O, Xue Y, Wang Q, Roewer L, Knoblauch H, Tyler-smith C, De Knijff P (2009) Europe PMC Funders Group Improving global and regional resolution of male lineage differentiation by simple single-copy Y-chromosomal short tandem repeat polymorphisms. Forensic Sci Int Genet 3:205–213
    • (2009) Forensic Sci Int Genet , vol.3 , pp. 205-213
    • Vermeulen, M.1    Wollstein, A.2    Van Der, G.K.3    Lao, O.4    Xue, Y.5    Wang, Q.6    Roewer, L.7    Knoblauch, H.8    Tyler-smith, C.9    De, K.P.10
  • 46
    • 84931093522 scopus 로고    scopus 로고
    • Evaluating the Y chromosomal STR dating in deep-rooting pedigrees
    • COI: 1:CAS:528:DC%2BC28XltFOisLk%3D
    • Wang CC, Li H (2015) Evaluating the Y chromosomal STR dating in deep-rooting pedigrees. Investig Genet. 28(6):8. doi:10.1186/s13323-015-0025-z
    • (2015) Investig Genet. , vol.28 , Issue.6 , pp. 8
    • Wang, C.C.1    Li, H.2
  • 47
    • 84907063828 scopus 로고    scopus 로고
    • Evaluating the Y chromosomal timescale in human demographic and lineage dating
    • PID: 25215184
    • Wang C-C, Gilbert MTP, Jin L, Li H (2014) Evaluating the Y chromosomal timescale in human demographic and lineage dating. Investig Genet 5(1):12
    • (2014) Investig Genet , vol.5 , Issue.1 , pp. 12
    • Wang, C.-C.1    Gilbert, M.T.P.2    Jin, L.3    Li, H.4
  • 48
    • 84948174316 scopus 로고    scopus 로고
    • Forensic science international: Genetics genetic polymorphisms and mutation rates of 27 Y-chromosomal STRs in a Han population from Guangdong Province, Southern China
    • Wang Y, Zhang Y, Zhang C, Li R, Yang Y, Ou X, Tong D, Sun H (2016) Forensic science international: Genetics genetic polymorphisms and mutation rates of 27 Y-chromosomal STRs in a Han population from Guangdong Province, Southern China. Forensic Sci Int Genet [Internet] 21:5–9. doi:10.1016/j.fsigen.2015.09.013
    • (2016) Forensic Sci Int Genet [Internet] , vol.21 , pp. 5-9
    • Wang, Y.1    Zhang, Y.2    Zhang, C.3    Li, R.4    Yang, Y.5    Ou, X.6    Tong, D.7    Sun, H.8
  • 50
    • 84887043971 scopus 로고    scopus 로고
    • A comparison of Y-chromosomal lineage dating using either resequencing or Y-SNP plus Y-STR genotyping
    • Wei W, Ayub Q, Xue Y, Tyler-Smith C (2013b) A comparison of Y-chromosomal lineage dating using either resequencing or Y-SNP plus Y-STR genotyping. Forensic Sci Int Genet [Internet] 7:568–572. doi:10.1016/j.fsigen.2013.03.014
    • (2013) Forensic Sci Int Genet [Internet] , vol.7 , pp. 568-572
    • Wei, W.1    Ayub, Q.2    Xue, Y.3    Tyler-Smith, C.4
  • 51
    • 84964200297 scopus 로고    scopus 로고
    • Population-scale sequencing data enable precise estimates of Y-STR mutation rates
    • Willems T, Gymrek M, Poznik GD, Tyler-smith C (2016) Population-scale sequencing data enable precise estimates of Y-STR mutation rates. Am J Hum Genet [Internet] 98:919–933. doi:10.1016/j.ajhg.2016.04.001
    • (2016) Am J Hum Genet [Internet] , vol.98 , pp. 919-933
    • Willems, T.1    Gymrek, M.2    Poznik, G.D.3    Tyler-smith, C.4
  • 52
    • 84921417929 scopus 로고    scopus 로고
    • The new Y chromosome haplotype reference database
    • COI: 1:CAS:528:DC%2BC2cXitV2gtbvL, PID: 25529991, PubMed PMID: 25529991
    • Willuweit S, Roewer L (2015) The new Y chromosome haplotype reference database. Forensic Sci Int Genet. 15:43–48. doi:10.1016/j.fsigen.2014.11.024 (PubMed PMID: 25529991)
    • (2015) Forensic Sci Int Genet. , vol.15 , pp. 43-48
    • Willuweit, S.1    Roewer, L.2
  • 53
    • 0037503021 scopus 로고    scopus 로고
    • Inferences from DNA data: population histories, evolutionary processes and forensic match probabilities
    • Wilson IJ, Weale ME, Balding DJ (2003) Inferences from DNA data: population histories, evolutionary processes and forensic match probabilities. J R Statist Soc 166:155–201
    • (2003) J R Statist Soc , vol.166 , pp. 155-201
    • Wilson, I.J.1    Weale, M.E.2    Balding, D.J.3
  • 56
    • 21444461129 scopus 로고    scopus 로고
    • On the evolutionary mutation rate at Y-chromosome STRs: comments on paper by Di Giacomo (2004)
    • PID: 15772851
    • Zhivotovsky LA, Underhill PA et al (2005) On the evolutionary mutation rate at Y-chromosome STRs: comments on paper by Di Giacomo (2004). Hum Genet. 116(6):529–532
    • (2005) Hum Genet. , vol.116 , Issue.6 , pp. 529-532
    • Zhivotovsky, L.A.1    Underhill, P.A.2
  • 57
    • 33750932402 scopus 로고    scopus 로고
    • Difference between evolutionarily effective and germ line mutation rate due to stochastically varying haplogroup size
    • COI: 1:CAS:528:DC%2BD28Xht1ejtbzJ, PID: 16956974
    • Zhivotovsky LA, Underhill PA, Feldman MW (2006) Difference between evolutionarily effective and germ line mutation rate due to stochastically varying haplogroup size. Mol Biol Evol 23(12):2268–2270. doi:10.1093/molbev/msl105
    • (2006) Mol Biol Evol , vol.23 , Issue.12 , pp. 2268-2270
    • Zhivotovsky, L.A.1    Underhill, P.A.2    Feldman, M.W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.