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Volumn 12, Issue , 2014, Pages 12-23

A global analysis of Y-chromosomal haplotype diversity for 23 STR loci

(163)  Purps, Josephine a   Siegert, Sabine b   Willuweit, Sascha a   Nagy, Marion a   Alves, Cíntia c   Salazar, Renato c   Angustia, Sheila M T d   Santos, Lorna H d   Anslinger, Katja e   Bayer, Birgit e   Ayub, Qasim f   Wei, Wei f   Xue, Yali f   Tyler Smith, Chris f   Bafalluy, Miriam Baeta g   Martínez Jarreta, Begoña g   Egyed, Balazs h   Balitzki, Beate i   Tschumi, Sibylle i   Ballard, David j   more..


Author keywords

AMOVA; Database; Discriminatory power; Gene diversity; Population structure

Indexed keywords

AFRICA; ARTICLE; ASIA; CHROMOSOME ANALYSIS; CONTROLLED STUDY; DYS19 GENE; DYS385AB GENE; DYS389I GENE; DYS389II GENE; DYS390 GENE; DYS391 GENE; DYS392 GENE; DYS393 GENE; DYS437 GENE; DYS438 GENE; DYS439 GENE; DYS448 GENE; DYS456 GENE; DYS458 GENE; DYS481 GENE; DYS533 GENE; DYS549 GENE; DYS570 GENE; DYS576 GENE; DYS635 GENE; DYS643 GENE; GATAH4 GENE; GENE FREQUENCY; GENE LOCUS; GENETIC ANALYZER; GENETIC DISTANCE; GENETIC MARKER; GENETIC VARIABILITY; GEOGRAPHIC DISTRIBUTION; HAPLOTYPE; HUMAN; HUMAN EXPERIMENT; MALE; NORMAL HUMAN; NORTH AMERICA; NULL ALLELE; POPULATION GENETIC STRUCTURE; PRIORITY JOURNAL; SHORT TANDEM REPEAT; SOUTH AND CENTRAL AMERICA; Y CHROMOSOME; ALLELE; FORENSIC GENETICS;

EID: 84901332843     PISSN: 18724973     EISSN: 18780326     Source Type: Journal    
DOI: 10.1016/j.fsigen.2014.04.008     Document Type: Article
Times cited : (232)

References (40)
  • 1
    • 0026651433 scopus 로고
    • Simple repeat sequences on the human y chromosome are equally polymorphic as their autosomal counterparts
    • L. Roewer, J. Arnemann, N.K. Spurr, K.H. Grzeschik, and J.T. Epplen Simple repeat sequences on the human Y chromosome are equally polymorphic as their autosomal counterparts Hum. Genet. 89 1992 389 394
    • (1992) Hum. Genet. , vol.89 , pp. 389-394
    • Roewer, L.1    Arnemann, J.2    Spurr, N.K.3    Grzeschik, K.H.4    Epplen, J.T.5
  • 2
    • 0027957582 scopus 로고
    • Highly informative compound haplotypes for the human Y chromosome
    • N. Mathias, M. Bayes, and C. Tyler-Smith Highly informative compound haplotypes for the human Y chromosome Hum. Mol. Genet. 3 1994 115 123 (Pubitemid 24038153)
    • (1994) Human Molecular Genetics , vol.3 , Issue.1 , pp. 115-123
    • Mathias, N.1    Bayes, M.2    Tyler-Smith, C.3
  • 3
    • 0030015565 scopus 로고    scopus 로고
    • Analysis of molecular variance (AMOVA) of Y-chromosome-specific microsatellites in two closely related human populations
    • DOI 10.1093/hmg/5.7.1029
    • L. Roewer, M. Kayser, P. Dieltjes, M. Nagy, and E. Bakker et al. Analysis of molecular variance (AMOVA) of Y-chromosome-specific microsatellites in two closely related human populations Hum. Mol. Genet. 5 1996 1029 1033 (Pubitemid 26232287)
    • (1996) Human Molecular Genetics , vol.5 , Issue.7 , pp. 1029-1033
    • Roewer, L.1    Kayser, M.2    Dieltjes, P.3    Nagy, M.4    Bakker, E.5    Krawczak, M.6    De Knijff, P.7
  • 7
    • 77956393408 scopus 로고    scopus 로고
    • Mutability of Y-chromosomal microsatellites: Rates, characteristics, molecular bases, and forensic implications
    • K.N. Ballantyne, M. Goedbloed, R. Fang, O. Schaap, and O. Lao et al. Mutability of Y-chromosomal microsatellites: rates, characteristics, molecular bases, and forensic implications Am. J. Hum. Genet. 87 2010 341 353
    • (2010) Am. J. Hum. Genet. , vol.87 , pp. 341-353
    • Ballantyne, K.N.1    Goedbloed, M.2    Fang, R.3    Schaap, O.4    Lao, O.5
  • 8
    • 84876793903 scopus 로고    scopus 로고
    • Haplotype data for 23 Y-chromosome markers in four U.S. Population groups
    • M.D. Coble, C.R. Hill, and J.M. Butler Haplotype data for 23 Y-chromosome markers in four U.S. population groups Forensic Sci. Int. Genet. 7 2013 e66 e68
    • (2013) Forensic Sci. Int. Genet. , vol.7
    • Coble, M.D.1    Hill, C.R.2    Butler, J.M.3
  • 11
    • 84858437953 scopus 로고    scopus 로고
    • Interpreting lineage markers in view of subpopulation effects
    • S. Cockerton, K. McManus, and J. Buckleton Interpreting lineage markers in view of subpopulation effects Forensic Sci. Int. Genet. 6 2012 393 397
    • (2012) Forensic Sci. Int. Genet. , vol.6 , pp. 393-397
    • Cockerton, S.1    McManus, K.2    Buckleton, J.3
  • 13
    • 0019346542 scopus 로고
    • DNA polymorphism detectable by restriction endonucleases
    • M. Nei, and F. Tajima DNA polymorphism detectable by restriction endonucleases Genetics 97 1981 145 163
    • (1981) Genetics , vol.97 , pp. 145-163
    • Nei, M.1    Tajima, F.2
  • 15
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes - Application to human mitochondrial-DNA restriction data
    • L. Excoffier, P.E. Smouse, and J.M. Quattro Analysis of molecular variance inferred from metric distances among DNA haplotypes - application to human mitochondrial-DNA restriction data Genetics 131 1992 479 491
    • (1992) Genetics , vol.131 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 16
    • 0028069723 scopus 로고
    • Using allele frequencies and geographic subdivision to reconstruct gene trees within a species: Molecular variance parsimony
    • L. Excoffier, and P.E. Smouse Using allele frequencies and geographic subdivision to reconstruct gene trees within a species - molecular variance parsimony Genetics 136 1994 343 359 (Pubitemid 24016698)
    • (1994) Genetics , vol.136 , Issue.1 , pp. 343-359
    • Excoffier, L.1    Smouse, P.E.2
  • 17
    • 0041654220 scopus 로고
    • Multidimensional-scaling by optimizing goodness of fit to a nonmetric hypothesis
    • J.B. Kruskal Multidimensional-scaling by optimizing goodness of fit to a nonmetric hypothesis Psychometrika 29 1964 1 27
    • (1964) Psychometrika , vol.29 , pp. 1-27
    • Kruskal, J.B.1
  • 18
    • 24944533365 scopus 로고
    • Nonmetric multidimensional-scaling - A numerical-method
    • J.B. Kruskal Nonmetric multidimensional-scaling - a numerical-method Psychometrika 29 1964 115 129
    • (1964) Psychometrika , vol.29 , pp. 115-129
    • Kruskal, J.B.1
  • 19
    • 84863304598 scopus 로고    scopus 로고
    • R Foundation for Statistical Computing Vienna, Austria 3-900051-07-0 Core Team R.
    • R. Core Team R: A language and environment for statistical computing 2013 R Foundation for Statistical Computing Vienna, Austria 3-900051-07-0 http://www.R-project.org/
    • (2013) R: A Language and Environment for Statistical Computing
  • 20
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin (version 3. 0): An integrated software package for population genetics data analysis
    • L. Excoffier, G. Laval, and S. Schneider Arlequin (version 3. 0): an integrated software package for population genetics data analysis Evol. Bioinf. 1 2005 47 50
    • (2005) Evol. Bioinf. , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 23
    • 85081814527 scopus 로고    scopus 로고
    • Original S code by Richard A
    • Becker and Allan R. Wilks. R version by Ray Brownrigg
    • Original S code by Richard A. Becker and Allan R. Wilks. R version by Ray Brownrigg. (2013) mapdata: Extra Map Databases, R package version 2.2-2, http://cran.r-project.org/package=mapdata.
    • (2013) Mapdata: Extra Map Databases, R Package Version 2.2-2
  • 24
    • 0002062430 scopus 로고    scopus 로고
    • GeoR: A package for geostatistical analysis
    • P.J. Ribeiro Jr., and P.J. Diggle geoR: a package for geostatistical analysis R-NEWS 1 2001 15 18
    • (2001) R-NEWS , vol.1 , pp. 15-18
    • Ribeiro, Jr.P.J.1    Diggle, P.J.2
  • 26
    • 30344458797 scopus 로고    scopus 로고
    • Allele frequencies for 27 Y-STR loci with U.S. Caucasian, African American, and Hispanic samples
    • DOI 10.1016/j.forsciint.2005.02.011, PII S0379073805001052
    • J.M. Butler, A.E. Decker, P.M. Vallone, and M.C. Kline Allele frequencies for 27 Y-STR loci with U.S. Caucasian, African American, and Hispanic samples Forensic Sci. Int. 156 2006 250 260 (Pubitemid 43061274)
    • (2006) Forensic Science International , vol.156 , Issue.2-3 , pp. 250-260
    • Butler, J.M.1    Decker, A.E.2    Vallone, P.M.3    Kline, M.C.4
  • 27
    • 33847075358 scopus 로고    scopus 로고
    • p11.2 (DYS458-MSY1-AMEL-Y) deletion
    • DOI 10.1016/j.forsciint.2006.04.013, PII S0379073806002684
    • Y.M. Chang, R. Perumal, P.Y. Keat, R.Y. Yong, and D.L. Kuehn et al. A distinct Y-STR haplotype for Amelogenin negative males characterized by a large Y(p)11. 2 (DYS458-MSY1-AMEL-Y) deletion Forensic Sci. Int. 166 2007 115 120 (Pubitemid 46274117)
    • (2007) Forensic Science International , vol.166 , Issue.2-3 , pp. 115-120
    • Chang, Y.M.1    Perumal, R.2    Keat, P.Y.3    Yong, R.Y.Y.4    Kuehn, D.L.C.5    Burgoyne, L.6
  • 28
    • 67349179184 scopus 로고    scopus 로고
    • Determination of deleted regions from Yp11.2 of an amelogenin negative male
    • T. Takayama, N. Takada, R. Suzuki, S. Nagaoka, and Y. Watanabe et al. Determination of deleted regions from Yp11.2 of an amelogenin negative male Legal Med. 11 Suppl. 1 2009 S578 S580
    • (2009) Legal Med. , vol.11 , Issue.SUPPL. 1
    • Takayama, T.1    Takada, N.2    Suzuki, R.3    Nagaoka, S.4    Watanabe, Y.5
  • 29
    • 50849135465 scopus 로고    scopus 로고
    • Null allele sequence structure at the DYS448 locus and implications for profile interpretation
    • B. Budowle, X. Aranda, R. Lagace, L. Hennessy, and J. Planz et al. Null allele sequence structure at the DYS448 locus and implications for profile interpretation Int. J. Legal Med. 122 2008 421 427
    • (2008) Int. J. Legal Med. , vol.122 , pp. 421-427
    • Budowle, B.1    Aranda, X.2    Lagace, R.3    Hennessy, L.4    Planz, J.5
  • 30
    • 0034703178 scopus 로고    scopus 로고
    • Deletion of azoospermia factor a (AZFa) region of human y chromosome caused by recombination between HERV15 proviruses
    • C. Sun, H. Skaletsky, S. Rozen, J. Gromoll, and E. Nieschlag et al. Deletion of azoospermia factor a (AZFa) region of human Y chromosome caused by recombination between HERV15 proviruses Hum. Mol. Genet. 9 2000 2291 2296
    • (2000) Hum. Mol. Genet. , vol.9 , pp. 2291-2296
    • Sun, C.1    Skaletsky, H.2    Rozen, S.3    Gromoll, J.4    Nieschlag, E.5
  • 31
    • 0037320728 scopus 로고    scopus 로고
    • Duplications of the AZFa region of the human Y chromosome are mediated by homologous recombination between HERVs and are compatible with male fertility
    • DOI 10.1093/hmg/ddg031
    • E. Bosch, and M.A. Jobling Duplications of the AZFa region of the human Y chromosome are mediated by homologous recombination between HERVs and are compatible with male fertility Hum. Mol. Genet. 12 2003 341 347 (Pubitemid 36204430)
    • (2003) Human Molecular Genetics , vol.12 , Issue.3 , pp. 341-347
    • Bosch, E.1    Jobling, M.A.2
  • 34
    • 84887044003 scopus 로고    scopus 로고
    • Y-chromosomal analysis identifies the skeletal remains of Swiss national hero Jorg Jenatsch (1596-1639)
    • C. Haas, N. Shved, F.J. Ruhli, C. Papageorgopoulou, and J. Purps et al. Y-chromosomal analysis identifies the skeletal remains of Swiss national hero Jorg Jenatsch (1596-1639) Forensic Sci. Int. Genet. 7 2013 610 617
    • (2013) Forensic Sci. Int. Genet. , vol.7 , pp. 610-617
    • Haas, C.1    Shved, N.2    Ruhli, F.J.3    Papageorgopoulou, C.4    Purps, J.5
  • 35
    • 62549109552 scopus 로고    scopus 로고
    • Copy number variation on the human y chromosome
    • M.A. Jobling Copy number variation on the human Y chromosome Cytogenet. Genome Res. 123 2008 253 262
    • (2008) Cytogenet. Genome Res. , vol.123 , pp. 253-262
    • Jobling, M.A.1
  • 36
    • 55349112202 scopus 로고    scopus 로고
    • Dynamic nature of the proximal AZFc region of the human y chromosome: Multiple independent deletion and duplication events revealed by microsatellite analysis
    • P. Balaresque, G.R. Bowden, E.J. Parkin, G.A. Omran, and E. Heyer et al. Dynamic nature of the proximal AZFc region of the human Y chromosome: multiple independent deletion and duplication events revealed by microsatellite analysis Hum. Mutat. 29 2008 1171 1180
    • (2008) Hum. Mutat. , vol.29 , pp. 1171-1180
    • Balaresque, P.1    Bowden, G.R.2    Parkin, E.J.3    Omran, G.A.4    Heyer, E.5
  • 37
    • 0031792256 scopus 로고    scopus 로고
    • Genetic evidence for a higher female migration rate in humans
    • DOI 10.1038/3088
    • M.T. Seielstad, E. Minch, and L.L. Cavalli-Sforza Genetic evidence for a higher female migration rate in humans Nat. Genet. 20 1998 278 280 (Pubitemid 28507673)
    • (1998) Nature Genetics , vol.20 , Issue.3 , pp. 278-280
    • Seielstad, M.T.1    Minch, E.2    Cavalli-Sforza, L.L.3
  • 38
    • 33750618201 scopus 로고    scopus 로고
    • Population structure of Y chromosome SNP haplogroups in the United States and forensic implications for constructing Y chromosome STR databases
    • DOI 10.1016/j.forsciint.2005.11.013, PII S0379073805006158
    • M.F. Hammer, V.F. Chamberlain, V.F. Kearney, D. Stover, and G. Zhang et al. Population structure of Y chromosome SNP haplogroups in the United States and forensic implications for constructing Y chromosome STR databases Forensic Sci. Int. 164 2006 45 55 (Pubitemid 44692069)
    • (2006) Forensic Science International , vol.164 , Issue.1 , pp. 45-55
    • Hammer, M.F.1    Chamberlain, V.F.2    Kearney, V.F.3    Stover, D.4    Zhang, G.5    Karafet, T.6    Walsh, B.7    Redd, A.J.8
  • 39
    • 34248592091 scopus 로고    scopus 로고
    • Y chromosome haplotype reference database (YHRD): Update
    • DOI 10.1016/j.fsigen.2007.01.017, PII S1872497307000464, DNA in Forensics 2006
    • S. Willuweit, and L. Roewer Y chromosome haplotype reference database (YHRD): update Forensic Sci. Int. Genet. 1 2007 83 87 (Pubitemid 46760391)
    • (2007) Forensic Science International: Genetics , vol.1 , Issue.2 , pp. 83-87
    • Willuweit, S.1    Roewer, L.2


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