메뉴 건너뛰기




Volumn 19, Issue 1, 2011, Pages 70-75

Mutation rate estimates for 110 Y-chromosome STRs combining population and father-son pair data

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; GENE LOCUS; GENE STRUCTURE; GENETIC VARIABILITY; HAPLOTYPE; HUMAN; MAJOR CLINICAL STUDY; MALE; MEIOSIS; MICROSATELLITE MARKER; MUTATION RATE; PEDIGREE; PRIORITY JOURNAL; PROTEIN MOTIF; STATISTICAL ANALYSIS; Y CHROMOSOME;

EID: 78650067593     PISSN: 10184813     EISSN: 14765438     Source Type: Journal    
DOI: 10.1038/ejhg.2010.154     Document Type: Article
Times cited : (62)

References (39)
  • 1
    • 32644437448 scopus 로고    scopus 로고
    • Comprehensive annotated STR physical map of the human y chromosome: Forensic implications
    • Hanson EK, Ballantyne J: Comprehensive annotated STR physical map of the human Y chromosome: Forensic implications. Leg Med 2006; 8: 110-120.
    • (2006) Leg Med , vol.8 , pp. 110-120
    • Hanson, E.K.1    Ballantyne, J.2
  • 2
    • 0035874084 scopus 로고    scopus 로고
    • Mutations at Y-STR loci: Implications for paternity testing and forensic analysis
    • Kayser M, Sajantila A: Mutations at Y-STR loci: implications for paternity testing and forensic analysis. Forensic Sci Int 2001; 118: 116-121.
    • (2001) Forensic Sci Int , vol.118 , pp. 116-121
    • Kayser, M.1    Sajantila, A.2
  • 3
    • 33644925214 scopus 로고    scopus 로고
    • Development and validation of the AmpFSTRs Yfilert PCR amplification kit: A male specific, single amplification 17 Y-STR multiplex system
    • Mulero JJ, Chang CW, Calandro LM et al: Development and validation of the AmpFSTRs Yfilert PCR amplification kit: a male specific, single amplification 17 Y-STR multiplex system. J For Sci 2006; 51: 64-75.
    • (2006) J for Sci , vol.51 , pp. 64-75
    • Mulero, J.J.1    Chang, C.W.2    Calandro, L.M.3
  • 4
    • 33846901880 scopus 로고    scopus 로고
    • Variation of 52 new Y-STR loci in the y Chromosome Consortium worldwide panel of 76 diverse individuals
    • Lim S, Xue Y, Parkin E, Tyler-Smith C: Variation of 52 new Y-STR loci in the Y Chromosome Consortium worldwide panel of 76 diverse individuals. Int J Legal Med 2007; 121: 124-127.
    • (2007) Int J Legal Med , vol.121 , pp. 124-127
    • Lim, S.1    Xue, Y.2    Parkin, E.3    Tyler-Smith, C.4
  • 5
    • 67849130552 scopus 로고    scopus 로고
    • Improving global and regional resolution of male lineage differentiation by simple single-copy Y-chromosomal short tandem repeat polymorphisms
    • Vermeulen M, Wollstein A, Van der Gaag K et al: Improving global and regional resolution of male lineage differentiation by simple single-copy Y-chromosomal short tandem repeat polymorphisms. Forensic Sci Int Genet 2009; 3: 205-213.
    • (2009) Forensic Sci Int Genet , vol.3 , pp. 205-213
    • Vermeulen, M.1    Wollstein, A.2    Van Der Gaag, K.3
  • 6
    • 74549133571 scopus 로고    scopus 로고
    • A worldwide survey of human male demographic history based on Y-SNP and Y-STR data from the HGDP-CEPH populations
    • msp243
    • Shi W, Ayub Q, Vermeulen M et al: A worldwide survey of human male demographic history based on Y-SNP and Y-STR data from the HGDP-CEPH populations. Mol Biol Evol 2010; 27: 385-393. msp243.
    • (2010) Mol Biol Evol , vol.27 , pp. 385-393
    • Shi, W.1    Ayub, Q.2    Vermeulen, M.3
  • 7
    • 0036724830 scopus 로고    scopus 로고
    • A genetic landscape reshaped by recent events: Y-chromosomal insights into central Asia
    • Zerjal T, Wells RS, Yuldasheva N, Ruzibakiev R, Tyler-Smith C: A genetic landscape reshaped by recent events: Y-chromosomal insights into central Asia. Am J Hum Genet 2002; 71: 466-482.
    • (2002) Am J Hum Genet , vol.71 , pp. 466-482
    • Zerjal, T.1    Wells, R.S.2    Yuldasheva, N.3    Ruzibakiev, R.4    Tyler-Smith, C.5
  • 8
    • 33646171102 scopus 로고    scopus 로고
    • Male demography in East Asia: A north-south contrast in human Population expansion times
    • Xue Y, Zerjal T, Bao W et al: Male demography in East Asia: a north-south contrast in human Population expansion times. Genetics 2006; 172: 2431-2439.
    • (2006) Genetics , vol.172 , pp. 2431-2439
    • Xue, Y.1    Zerjal, T.2    Bao, W.3
  • 9
    • 0030447670 scopus 로고    scopus 로고
    • Measures of variation at DNA repeat loci under a general stepwise mutation model
    • Kimmel M, Chakraborty R: Measures of variation at DNA repeat loci under a general stepwise mutation model. Theor Popul Biol 1996; 50: 345-367.
    • (1996) Theor Popul Biol , vol.50 , pp. 345-367
    • Kimmel, M.1    Chakraborty, R.2
  • 10
    • 1642337411 scopus 로고    scopus 로고
    • Estimating effective population size or mutation rate with microsatellites
    • Xu H, Fu Y: Estimating effective population size or mutation rate with microsatellites. Genetics 2004; 166: 555-563.
    • (2004) Genetics , vol.166 , pp. 555-563
    • Xu, H.1    Fu, Y.2
  • 11
    • 0030940879 scopus 로고    scopus 로고
    • Estimating y chromosome specific microsatellite mutation frequencies using deep rooting pedigrees
    • Heyer E, Puymirat J, Dieltjes P, Bakker E, de Knijff P: Estimating Y chromosome specific microsatellite mutation frequencies using deep rooting pedigrees. Hum Mol Genet 1997; 6: 799-803.
    • (1997) Hum Mol Genet , vol.6 , pp. 799-803
    • Heyer, E.1    Puymirat, J.2    Dieltjes, P.3    Bakker, E.4    De Knijff, P.5
  • 12
    • 28844507819 scopus 로고    scopus 로고
    • Mutation rates at y chromosome specific microsatellites
    • Gusmão L, Sánchez-Diz P, Calafell F et al: Mutation rates at Y chromosome specific microsatellites. Hum Mutat 2005; 26: 520-528.
    • (2005) Hum Mutat , vol.26 , pp. 520-528
    • Gusmão, L.1    Sánchez-Diz, P.2    Calafell, F.3
  • 13
    • 0036943013 scopus 로고    scopus 로고
    • Forensic evaluation and population data on the new Y-STRs DYS434, DYS437, DYS438, DYS439 and GATA A10
    • Gusmão L, Alves C, Beleza S, Amorim A: Forensic evaluation and population data on the new Y-STRs DYS434, DYS437, DYS438, DYS439 and GATA A10. Int J Legal Med 2002; 116: 139-147.
    • (2002) Int J Legal Med , vol.116 , pp. 139-147
    • Gusmão, L.1    Alves, C.2    Beleza, S.3    Amorim, A.4
  • 14
    • 33646745151 scopus 로고    scopus 로고
    • Nomenclature and allele repeat structure update for the Y-STR locus GATA H4
    • Mulero JJ, Budowle B, Butler JM, Gusmão L: Nomenclature and allele repeat structure update for the Y-STR locus GATA H4. J For Sci 2006; 51: 694.
    • (2006) J for Sci , vol.51 , pp. 694
    • Mulero, J.J.1    Budowle, B.2    Butler, J.M.3    Gusmão, L.4
  • 16
    • 84946650481 scopus 로고
    • Probable inference, the law of succession, and statistical inference
    • Wilson EB: Probable inference, the law of succession, and statistical inference. J Am Stat Assoc 1927; 22: 209-212.
    • (1927) J Am Stat Assoc , vol.22 , pp. 209-212
    • Wilson, E.B.1
  • 19
    • 0031778070 scopus 로고    scopus 로고
    • Mutation rate in human microsatellites: Influence of the structure and length of the tandem repeat
    • Brinkmann B, Klintschar M, Neuhuber F, Hühne J, Rolf B: Mutation rate in human microsatellites: influence of the structure and length of the tandem repeat. Am J Hum Genet 1998; 62: 1408-1415.
    • (1998) Am J Hum Genet , vol.62 , pp. 1408-1415
    • Brinkmann, B.1    Klintschar, M.2    Neuhuber, F.3    Hühne, J.4    Rolf, B.5
  • 20
    • 0034079715 scopus 로고    scopus 로고
    • Heterogeneous mutation processes in human microsatellite DNA sequences
    • Ellegren H: Heterogeneous mutation processes in human microsatellite DNA sequences. Nat Genet 2000; 24: 400-402.
    • (2000) Nat Genet , vol.24 , pp. 400-402
    • Ellegren, H.1
  • 21
    • 2442672659 scopus 로고    scopus 로고
    • A comprehensive survey of human Y-chromosomal microsatellites
    • Kayser M, Kittler R, Erler A et al: A comprehensive survey of human Y-chromosomal microsatellites. Am J Hum Genet 2004; 74: 1183-1197.
    • (2004) Am J Hum Genet , vol.74 , pp. 1183-1197
    • Kayser, M.1    Kittler, R.2    Erler, A.3
  • 22
    • 70349696186 scopus 로고    scopus 로고
    • Decreased rate of evolution in y chromosome STR loci of increased size of the repeat unit
    • Järve M, Zhivotovsky LA, Rootsi S et al: Decreased rate of evolution in Y chromosome STR loci of increased size of the repeat unit. PLoS ONE 2009; 4: e7276.
    • (2009) PLoS ONE , vol.4
    • Järve, M.1    Zhivotovsky, L.A.2    Rootsi, S.3
  • 23
    • 32644445649 scopus 로고    scopus 로고
    • DNA Commission of the International Society of Forensic Genetics (ISFG): An update of the recommendations on the use of Y-STRs in forensic analysis
    • Gusmão L, Butler JM, Carracedo A et al: DNA Commission of the International Society of Forensic Genetics (ISFG): an update of the recommendations on the use of Y-STRs in forensic analysis. Forensic Sci Int 2006; 157: 187-197.
    • (2006) Forensic Sci Int , vol.157 , pp. 187-197
    • Gusmão, L.1    Butler, J.M.2    Carracedo, A.3
  • 24
    • 34247380728 scopus 로고    scopus 로고
    • Properties of novel and widely studied Y-STR loci in three South African populations
    • Leat N, Ehrenreich L, Benjeddou M, Cloete K, Davison S: Properties of novel and widely studied Y-STR loci in three South African populations. Forensic Sci Int 2007; 168: 154-161.
    • (2007) Forensic Sci Int , vol.168 , pp. 154-161
    • Leat, N.1    Ehrenreich, L.2    Benjeddou, M.3    Cloete, K.4    Davison, S.5
  • 26
    • 2642574503 scopus 로고    scopus 로고
    • R Development Core Team: R Vienna Austria: R Foundation for Statistical Computing Available at
    • R Development Core Team: R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing, 2009. Available at: http:// www.R-project.org.
    • (2009) A Language and Environment for Statistical Computing
  • 28
    • 1042304216 scopus 로고    scopus 로고
    • APE: Analyses of phylogenetics and evolution in R language
    • Paradis E, Claude J, Strimmer K: APE: analyses of phylogenetics and evolution in R language. Bioinformatics 2004; 20: 289-290.
    • (2004) Bioinformatics , vol.20 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 30
    • 7244221627 scopus 로고    scopus 로고
    • SIMCOAL 2.0: A program to simulate genomic diversity over large recombining regions in a subdivided population with a complex history
    • Laval G, Excoffier L: SIMCOAL 2.0: a program to simulate genomic diversity over large recombining regions in a subdivided population with a complex history. Bioinformatics 2004; 20: 2485-2487.
    • (2004) Bioinformatics , vol.20 , pp. 2485-2487
    • Laval, G.1    Excoffier, L.2
  • 31
    • 9144274354 scopus 로고    scopus 로고
    • The effective mutation rate at Y chromosome short tandem repeats, with application to human population-divergence time
    • Zhivotovsky LA, Underhill PA, Cinnio lu C et al: The effective mutation rate at Y chromosome short tandem repeats, with application to human population-divergence time. Am J Hum Genet 2004; 74: 50-61.
    • (2004) Am J Hum Genet , vol.74 , pp. 50-61
    • Zhivotovsky, L.A.1    Underhill, P.A.2    Cinniolu, C.3
  • 33
    • 1042276698 scopus 로고    scopus 로고
    • Y-chromosomal microsatellite mutation rates: Differences in mutation rate between and within loci
    • Dupuy BM, Stenersen M, Egeland T, Olaisen B: Y-chromosomal microsatellite mutation rates: differences in mutation rate between and within loci. Hum Mutat 2004; 23: 117-124.
    • (2004) Hum Mutat , vol.23 , pp. 117-124
    • Dupuy, B.M.1    Stenersen, M.2    Egeland, T.3    Olaisen, B.4
  • 34
    • 67349226460 scopus 로고    scopus 로고
    • Mutation rates at y chromosome short tandem repeats in Texas populations
    • Ge J, Budowle B, Aranda XG et al: Mutation rates at Y chromosome short tandem repeats in Texas populations. Forensic Sci Int Genet 2009; 3: 179-184.
    • (2009) Forensic Sci Int Genet , vol.3 , pp. 179-184
    • Ge, J.1    Budowle, B.2    Aranda, X.G.3
  • 35
    • 0033940469 scopus 로고    scopus 로고
    • A short tandem repeat-based phylogeny for the human y chromosome
    • Forster P, Röhl A, Lünnemann P et al: A short tandem repeat-based phylogeny for the human Y chromosome. Am J Hum Genet 2000; 67: 182-196.
    • (2000) Am J Hum Genet , vol.67 , pp. 182-196
    • Forster, P.1    Röhl, A.2    Lünnemann, P.3
  • 37
    • 0034764948 scopus 로고    scopus 로고
    • Phylogenetic and familial estimates of mitochondrial substitution rates: Study of control region mutations in deep-rooting pedigrees
    • Heyer E, Zietkiewicz E, Rochowski A et al: Phylogenetic and familial estimates of mitochondrial substitution rates: study of control region mutations in deep-rooting pedigrees. Am J Hum Genet 2001; 69: 1113-1126.
    • (2001) Am J Hum Genet , vol.69 , pp. 1113-1126
    • Heyer, E.1    Zietkiewicz, E.2    Rochowski, A.3
  • 38
    • 0031853820 scopus 로고    scopus 로고
    • Phylogenetic resolution of complex mutational features at Y-STR DYS390 in aboriginal Australians and Papuans
    • Forster P, Kayser M, Meyer E et al: Phylogenetic resolution of complex mutational features at Y-STR DYS390 in aboriginal Australians and Papuans. Mol Biol Evol 1998; 15: 1108-1114.
    • (1998) Mol Biol Evol , vol.15 , pp. 1108-1114
    • Forster, P.1    Kayser, M.2    Meyer, E.3
  • 39
    • 0035144672 scopus 로고    scopus 로고
    • Haplogroup-specific deviation from the stepwise mutation model at the microsatellite loci DYS388 and DYS392
    • Nebel A, Filon D, Hohoff C et al: Haplogroup-specific deviation from the stepwise mutation model at the microsatellite loci DYS388 and DYS392. Eur J Hum Genet 2001; 9: 22-26.
    • (2001) Eur J Hum Genet , vol.9 , pp. 22-26
    • Nebel, A.1    Filon, D.2    Hohoff, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.