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Volumn 41, Issue , 2014, Pages 879-889

Can salmonids (Oncorhynchus spp.) be identified to species using vertebral morphometrics? A test using ancient DNA from Coffman Cove, Alaska

Author keywords

Ancient DNA; Genetic species identification; Northwest Coast; PCR inhibitors; Salmonid morphometrics; Tlingit

Indexed keywords

ACCURACY ASSESSMENT; ARCHAEOLOGICAL EVIDENCE; DNA; GENETIC ANALYSIS; GENETIC STRUCTURE; IDENTIFICATION METHOD; INHIBITOR; MORPHOMETRY; POLYMERASE CHAIN REACTION; SALMONID; SKELETAL REMAINS;

EID: 84887367227     PISSN: 03054403     EISSN: 10959238     Source Type: Journal    
DOI: 10.1016/j.jas.2013.10.017     Document Type: Article
Times cited : (35)

References (65)
  • 3
    • 15944393409 scopus 로고    scopus 로고
    • University of California Press, Berkeley, and Wild Salmon Center and Ecotrust, Portland, OR
    • Augerot X. Atlas of Pacific Salmon 2005, University of California Press, Berkeley, and Wild Salmon Center and Ecotrust, Portland, OR.
    • (2005) Atlas of Pacific Salmon
    • Augerot, X.1
  • 4
    • 84880351230 scopus 로고    scopus 로고
    • Further evaluation of the efficacy of contamination removal from bone surfaces
    • Barta J.L., Monroe C., Kemp B.M. Further evaluation of the efficacy of contamination removal from bone surfaces. Forensic Sci. Int. 2013, 231:340-348.
    • (2013) Forensic Sci. Int. , vol.231 , pp. 340-348
    • Barta, J.L.1    Monroe, C.2    Kemp, B.M.3
  • 7
    • 0001304676 scopus 로고
    • Life history of sockeye salmon (Oncorhynchus nerka)
    • UBC Press, Vancouver, C. Groot, L. Margolis (Eds.)
    • Burgner R.L. Life history of sockeye salmon (Oncorhynchus nerka). Pacific Salmon Life Histories 1991, 1-117. UBC Press, Vancouver. C. Groot, L. Margolis (Eds.).
    • (1991) Pacific Salmon Life Histories , pp. 1-117
    • Burgner, R.L.1
  • 9
    • 0027386370 scopus 로고
    • Natural versus cultural salmonid remains: origin of The Dalles Roadcut bones, Columbia River, U.S.A
    • Butler V.L. Natural versus cultural salmonid remains: origin of The Dalles Roadcut bones, Columbia River, U.S.A. J.Archaeol. Sci. 1993, 20:1-24.
    • (1993) J.Archaeol. Sci. , vol.20 , pp. 1-24
    • Butler, V.L.1
  • 10
    • 0012576279 scopus 로고    scopus 로고
    • Ancient DNA from salmon bone: a preliminary study
    • Butler V.L., Bowers N.J. Ancient DNA from salmon bone: a preliminary study. Anc. Biomol. 1998, 2:17-26.
    • (1998) Anc. Biomol. , vol.2 , pp. 17-26
    • Butler, V.L.1    Bowers, N.J.2
  • 11
    • 23944461854 scopus 로고    scopus 로고
    • Resource intensification and resource depression in the Pacific Northwest of North America
    • Butler V.L., Campbell S.K. Resource intensification and resource depression in the Pacific Northwest of North America. J.World Prehistory 2004, 18:327-405.
    • (2004) J.World Prehistory , vol.18 , pp. 327-405
    • Butler, V.L.1    Campbell, S.K.2
  • 13
    • 77951586300 scopus 로고    scopus 로고
    • Archaeological evidence for resilience of Pacific Northwest salmon populations and the socioecological system over the last ~7500 years
    • Campbell S.K., Butler V.L. Archaeological evidence for resilience of Pacific Northwest salmon populations and the socioecological system over the last ~7500 years. Ecol. Soc. 2010, 15(1):17.
    • (2010) Ecol. Soc. , vol.15 , Issue.1 , pp. 17
    • Campbell, S.K.1    Butler, V.L.2
  • 14
    • 84975019400 scopus 로고
    • Radiographic age determination of Pacific salmon: species and seasonal inferences
    • Cannon A. Radiographic age determination of Pacific salmon: species and seasonal inferences. J.Field Archaeol. 1988, 15:103-108.
    • (1988) J.Field Archaeol. , vol.15 , pp. 103-108
    • Cannon, A.1
  • 15
    • 33847269173 scopus 로고    scopus 로고
    • Early storage and sedentism on the Pacific Northwest Coast: ancient DNA analysis of salmon remains from Namu, British Columbia
    • Cannon A., Yang D.Y. Early storage and sedentism on the Pacific Northwest Coast: ancient DNA analysis of salmon remains from Namu, British Columbia. Am. Antiq. 2006, 71:123-140.
    • (2006) Am. Antiq. , vol.71 , pp. 123-140
    • Cannon, A.1    Yang, D.Y.2
  • 16
    • 80052673330 scopus 로고    scopus 로고
    • Site-specific salmon fisheries on the Central Coast of British Columbia
    • University of Alaska Press, Fairbanks, M.L. Moss, A. Cannon (Eds.)
    • Cannon A., Yang D., Speller C.F. Site-specific salmon fisheries on the Central Coast of British Columbia. The Archaeology of North Pacific Fisheries 2011, 57-74. University of Alaska Press, Fairbanks. M.L. Moss, A. Cannon (Eds.).
    • (2011) The Archaeology of North Pacific Fisheries , pp. 57-74
    • Cannon, A.1    Yang, D.2    Speller, C.F.3
  • 20
    • 0004208655 scopus 로고
    • Edited with additions by Frederica deLaguna, University of Washington Press, Seattle and Douglas and McIntyre,Vancouver, in association with the American Museum of Natural History, New York
    • Emmons G.T. The Tlingit Indians 1991, Edited with additions by Frederica deLaguna, University of Washington Press, Seattle and Douglas and McIntyre,Vancouver, in association with the American Museum of Natural History, New York.
    • (1991) The Tlingit Indians
    • Emmons, G.T.1
  • 21
    • 80051795438 scopus 로고    scopus 로고
    • Addressing seasonal site use through ancient DNA species identification of Pacific salmon at Dionisio Point, Galiano Island, British Columbia
    • Ewonus P.A., Cannon A., Yang D.Y. Addressing seasonal site use through ancient DNA species identification of Pacific salmon at Dionisio Point, Galiano Island, British Columbia. J.Archaeol. Sci. 2011, 38:2536-2546.
    • (2011) J.Archaeol. Sci. , vol.38 , pp. 2536-2546
    • Ewonus, P.A.1    Cannon, A.2    Yang, D.Y.3
  • 22
    • 68949157296 scopus 로고    scopus 로고
    • Postmortem damage of mitochondrial DNA
    • Springer-Verlag, Berlin, H.-J. Bandelt, V. Macaulay, M. Richards (Eds.)
    • Gilbert M.T.P. Postmortem damage of mitochondrial DNA. Human Mitochondrial DNA and the Evolution of Homo Sapiens 2006, 91-115. Springer-Verlag, Berlin. H.-J. Bandelt, V. Macaulay, M. Richards (Eds.).
    • (2006) Human Mitochondrial DNA and the Evolution of Homo Sapiens , pp. 91-115
    • Gilbert, M.T.P.1
  • 24
    • 84867913820 scopus 로고    scopus 로고
    • Using ancient DNA identification and osteometric measures of archaeological Pacific Salmon vertebrae for reconstructing salmon fisheries and site seasonality at Dionisio Point, British Columbia
    • Grier C., Flanigan K., Winters M., Jordan L.G., Lukowski S., Kemp B.M. Using ancient DNA identification and osteometric measures of archaeological Pacific Salmon vertebrae for reconstructing salmon fisheries and site seasonality at Dionisio Point, British Columbia. J.Archaeol. Sci. 2013, 40:544-555.
    • (2013) J.Archaeol. Sci. , vol.40 , pp. 544-555
    • Grier, C.1    Flanigan, K.2    Winters, M.3    Jordan, L.G.4    Lukowski, S.5    Kemp, B.M.6
  • 25
    • 0004035429 scopus 로고
    • UBC Press, Vancouver, C. Groot, L. Margolis (Eds.)
    • Pacific Salmon Life Histories 1991, UBC Press, Vancouver. C. Groot, L. Margolis (Eds.).
    • (1991) Pacific Salmon Life Histories
  • 26
    • 85030431932 scopus 로고    scopus 로고
    • Salmon and models of social complexity on the Northwest Coast
    • Hanson D.K. Salmon and models of social complexity on the Northwest Coast. North Pac. Prehistory 2008, 2:123-152.
    • (2008) North Pac. Prehistory , vol.2 , pp. 123-152
    • Hanson, D.K.1
  • 27
    • 0002399756 scopus 로고
    • Life history of pink salmon (Oncorhynchus gorbuscha)
    • UBC Press, Vancouver, C. Groot, L. Margolis (Eds.)
    • Heard W.R. Life history of pink salmon (Oncorhynchus gorbuscha). Pacific Salmon Life Histories 1991, 119-230. UBC Press, Vancouver. C. Groot, L. Margolis (Eds.).
    • (1991) Pacific Salmon Life Histories , pp. 119-230
    • Heard, W.R.1
  • 29
    • 78049231822 scopus 로고    scopus 로고
    • Can salmonids (Oncorhynchus spp.) be identified to species using vertebral morphometrics?
    • Huber H.R., Jorgensen J.C., Butler V.L., Baker G., Stevens R. Can salmonids (Oncorhynchus spp.) be identified to species using vertebral morphometrics?. J.Archaeol. Sci. 2011, 38(1):136-146.
    • (2011) J.Archaeol. Sci. , vol.38 , Issue.1 , pp. 136-146
    • Huber, H.R.1    Jorgensen, J.C.2    Butler, V.L.3    Baker, G.4    Stevens, R.5
  • 30
    • 73349140818 scopus 로고    scopus 로고
    • Universal mtDNA primers for species identification of degraded bony fish samples
    • Jordan L.G., Steele C.A., Thorgaard G.H. Universal mtDNA primers for species identification of degraded bony fish samples. Mol. Ecol. Resour. 2010, 10:225-228.
    • (2010) Mol. Ecol. Resour. , vol.10 , pp. 225-228
    • Jordan, L.G.1    Steele, C.A.2    Thorgaard, G.H.3
  • 31
    • 0003045959 scopus 로고
    • Life histories of masu and amago salmon
    • UBC Press, Vancouver, C. Groot, L. Margolis (Eds.)
    • Kato F. Life histories of masu and amago salmon. Pacific Salmon Life Histories 1991, 447-520. UBC Press, Vancouver. C. Groot, L. Margolis (Eds.).
    • (1991) Pacific Salmon Life Histories , pp. 447-520
    • Kato, F.1
  • 32
    • 25144473574 scopus 로고    scopus 로고
    • Use of bleach to eliminate contaminating DNA from the surfaces of bones and teeth
    • Kemp B.M., Smith D.G. Use of bleach to eliminate contaminating DNA from the surfaces of bones and teeth. Forensic Sci. Int. 2005, 154:53-61.
    • (2005) Forensic Sci. Int. , vol.154 , pp. 53-61
    • Kemp, B.M.1    Smith, D.G.2
  • 33
    • 77956740767 scopus 로고    scopus 로고
    • Ancient DNA methodology: thoughts from Brian M. Kemp and David Glenn Smith on "Mitochondrial DNA of protohistoric remains of an Arikara population from South Dakota,"
    • Kemp B.M., Smith D.G. Ancient DNA methodology: thoughts from Brian M. Kemp and David Glenn Smith on "Mitochondrial DNA of protohistoric remains of an Arikara population from South Dakota,". Hum. Biol. 2010, 82:227-238.
    • (2010) Hum. Biol. , vol.82 , pp. 227-238
    • Kemp, B.M.1    Smith, D.G.2
  • 35
    • 0005526583 scopus 로고
    • Salmon availability, technology, and cultural adaptation in the Fraser River watershed
    • UBC Press, Vancouver, B. Hayden (Ed.)
    • Kew M. Salmon availability, technology, and cultural adaptation in the Fraser River watershed. AComplex Culture of the British ColumbiaPlateau: Traditional Stl'átl'imx Resource Use 1992, 177-221. UBC Press, Vancouver. B. Hayden (Ed.).
    • (1992) AComplex Culture of the British ColumbiaPlateau: Traditional Stl'átl'imx Resource Use , pp. 177-221
    • Kew, M.1
  • 37
    • 85030439816 scopus 로고    scopus 로고
    • Thoms, Salmon Bay and Luck Lakes Sockeye Salmon (Oncorhynchus nerka) Stock Assessment Project 2002 Annual Report
    • Submitted to the U.S. Forest Service
    • Lewis B.A., Cartwright M.A. Thoms, Salmon Bay and Luck Lakes Sockeye Salmon (Oncorhynchus nerka) Stock Assessment Project 2002 Annual Report. Alaska Department of Fish and Game Regional Information Report No. 2004, 1J04-11. Submitted to the U.S. Forest Service.
    • (2004) Alaska Department of Fish and Game Regional Information Report No.
    • Lewis, B.A.1    Cartwright, M.A.2
  • 38
    • 0004100701 scopus 로고
    • Distribution and Abundance of Fishes and Invertebrates in West Coast Estuaries
    • ELMR Report No. 4, U.S. NOAA/NOS Strategic Environmental Assessments Division, Silver Spring, MD
    • Monaco M.E., Emmett R.L., Nelson D.M., Hinton S.A. Distribution and Abundance of Fishes and Invertebrates in West Coast Estuaries. Data Summaries 1990, vol. I. ELMR Report No. 4, U.S. NOAA/NOS Strategic Environmental Assessments Division, Silver Spring, MD.
    • (1990) Data Summaries , vol.1
    • Monaco, M.E.1    Emmett, R.L.2    Nelson, D.M.3    Hinton, S.A.4
  • 39
    • 84876477763 scopus 로고    scopus 로고
    • Evaluating the efficacy of various thermo-stable polymerases against co-extracted PCR inhibitors in ancient DNA samples
    • Monroe C., Grier C., Kemp B.M. Evaluating the efficacy of various thermo-stable polymerases against co-extracted PCR inhibitors in ancient DNA samples. Forensic Sci. Int. 2013, 228:142-153.
    • (2013) Forensic Sci. Int. , vol.228 , pp. 142-153
    • Monroe, C.1    Grier, C.2    Kemp, B.M.3
  • 42
    • 84887386330 scopus 로고    scopus 로고
    • Cod and salmon: a tale of two assemblages from Coffman Cove, Alaska
    • University of Alaska Press, Fairbanks, M.L. Moss, A. Cannon (Eds.)
    • Moss M.L. Cod and salmon: a tale of two assemblages from Coffman Cove, Alaska. The Archaeology of North Pacific Fisheries 2011, 219-233. University of Alaska Press, Fairbanks. M.L. Moss, A. Cannon (Eds.).
    • (2011) The Archaeology of North Pacific Fisheries , pp. 219-233
    • Moss, M.L.1
  • 43
    • 84887373994 scopus 로고    scopus 로고
    • Fishing traps and weirs on the Northwest Coast of North America: new approaches and new insights
    • Oxford University Press, Oxford, F. Menotti, A. O'Sullivan (Eds.)
    • Moss M.L. Fishing traps and weirs on the Northwest Coast of North America: new approaches and new insights. OxfordHandbook of Wetland Archaeology 2013, 323-337. Oxford University Press, Oxford. F. Menotti, A. O'Sullivan (Eds.).
    • (2013) OxfordHandbook of Wetland Archaeology , pp. 323-337
    • Moss, M.L.1
  • 44
    • 85030442299 scopus 로고    scopus 로고
    • Final report prepared for the USDA Forest Service, Tongass National Forest Contract Number AG-0109-C-0053, Craig and Thorne Bay Ranger Districts. Craig, AK, Northern Land Use Research, Inc., Fairbanks, AK
    • Moss M.L., Hays J.M., Bowers P.M., Reger D.R. Coffman Cove Community Archaeology Project, 2006 Excavations 2012, Final report prepared for the USDA Forest Service, Tongass National Forest Contract Number AG-0109-C-0053, Craig and Thorne Bay Ranger Districts. Craig, AK, Northern Land Use Research, Inc., Fairbanks, AK.
    • (2012) Coffman Cove Community Archaeology Project, 2006 Excavations
    • Moss, M.L.1    Hays, J.M.2    Bowers, P.M.3    Reger, D.R.4
  • 46
    • 84859617611 scopus 로고    scopus 로고
    • Late Holocene fisheries in Gwaii Haanas: species composition, trends in abundance, and environmental or cultural explanations
    • University of Alaska Press, Fairbanks, M.L. Moss, A. Cannon (Eds.)
    • Orchard T.J. Late Holocene fisheries in Gwaii Haanas: species composition, trends in abundance, and environmental or cultural explanations. The Archaeology of North Pacific Fisheries 2011, 111-128. University of Alaska Press, Fairbanks. M.L. Moss, A. Cannon (Eds.).
    • (2011) The Archaeology of North Pacific Fisheries , pp. 111-128
    • Orchard, T.J.1
  • 47
    • 84859575837 scopus 로고    scopus 로고
    • Identification of salmon species from archaeological remains on the Northwest Coast
    • University of Alaska Press, Fairbanks, M.L. Moss, A. Cannon (Eds.)
    • Orchard T.J., Szpak P. Identification of salmon species from archaeological remains on the Northwest Coast. The Archaeology of North Pacific Fisheries 2011, 17-29. University of Alaska Press, Fairbanks. M.L. Moss, A. Cannon (Eds.).
    • (2011) The Archaeology of North Pacific Fisheries , pp. 17-29
    • Orchard, T.J.1    Szpak, P.2
  • 53
    • 0342944178 scopus 로고
    • Statistical review of the Alaska salmon fisheries, part IV: southeastern Alaska
    • Rich W.H., Ball E.M. Statistical review of the Alaska salmon fisheries, part IV: southeastern Alaska. Bull. Bur. Fish. 1933, 47(13):437-673.
    • (1933) Bull. Bur. Fish. , vol.47 , Issue.13 , pp. 437-673
    • Rich, W.H.1    Ball, E.M.2
  • 54
    • 2442560471 scopus 로고    scopus 로고
    • Nondestructive DNA extraction method for mitochondrial DNA analyses of museum specimens
    • 814-816, 818-821
    • Rohland N., Siedel H., Hofreiter M. Nondestructive DNA extraction method for mitochondrial DNA analyses of museum specimens. Biotechniques 2004, 36. 814-816, 818-821.
    • (2004) Biotechniques , vol.36
    • Rohland, N.1    Siedel, H.2    Hofreiter, M.3
  • 57
    • 0002827286 scopus 로고
    • Life history of chum salmon (Oncorhynchus keta)
    • UBC Press, Vancouver, C. Groot, L. Margolis (Eds.)
    • Salo E.O. Life history of chum salmon (Oncorhynchus keta). Pacific Salmon Life Histories 1991, 231-309. UBC Press, Vancouver. C. Groot, L. Margolis (Eds.).
    • (1991) Pacific Salmon Life Histories , pp. 231-309
    • Salo, E.O.1
  • 58
    • 0001794784 scopus 로고
    • Life history of coho salmon (Oncorhynchus kisutch)
    • UBC Press, Vancouver, C. Groot, L. Margolis (Eds.)
    • Sandercock F.K. Life history of coho salmon (Oncorhynchus kisutch). Pacific Salmon Life Histories 1991, 395-445. UBC Press, Vancouver. C. Groot, L. Margolis (Eds.).
    • (1991) Pacific Salmon Life Histories , pp. 395-445
    • Sandercock, F.K.1
  • 59
    • 0003071133 scopus 로고
    • The structure of an anadromous fish resource
    • Academic Press, Orlando, L. Binford, S. Binford (Eds.)
    • Schalk R.F. The structure of an anadromous fish resource. For Theory Building in Archaeology 1977, 207-249. Academic Press, Orlando. L. Binford, S. Binford (Eds.).
    • (1977) For Theory Building in Archaeology , pp. 207-249
    • Schalk, R.F.1
  • 60
    • 85030416996 scopus 로고    scopus 로고
    • An update of intertidal fishing structures in southeast Alaska
    • Smith J.L. An update of intertidal fishing structures in southeast Alaska. Alsk. J. Anthropol. 2011, 9(1):1-26.
    • (2011) Alsk. J. Anthropol. , vol.9 , Issue.1 , pp. 1-26
    • Smith, J.L.1
  • 62
    • 21344447731 scopus 로고    scopus 로고
    • Ancient DNA investigation of prehistoric salmon resource utilization at Keatley Creek
    • Speller C.F., Yang D.Y., Hayden B. Ancient DNA investigation of prehistoric salmon resource utilization at Keatley Creek. J.Archaeol. Sci. 2005, 32(9):1378-1389.
    • (2005) J.Archaeol. Sci. , vol.32 , Issue.9 , pp. 1378-1389
    • Speller, C.F.1    Yang, D.Y.2    Hayden, B.3
  • 63
    • 0004710262 scopus 로고
    • Environment
    • Smithsonian Institution, Washington, D.C. W. Suttles (Ed.) Handbook of North American Indians
    • Suttles W. Environment. Northwest Coast 1990, vol. 7. Smithsonian Institution, Washington, D.C. W. Suttles (Ed.).
    • (1990) Northwest Coast , vol.7
    • Suttles, W.1
  • 64
    • 1842782339 scopus 로고    scopus 로고
    • DNA species identification of archaeological salmon bone from the Pacific Northwest Coast of North America
    • Yang D.Y., Cannon A., Saunders S.R. DNA species identification of archaeological salmon bone from the Pacific Northwest Coast of North America. J.Archaeol. Sci. 2004, 31(5):619-631.
    • (2004) J.Archaeol. Sci. , vol.31 , Issue.5 , pp. 619-631
    • Yang, D.Y.1    Cannon, A.2    Saunders, S.R.3
  • 65
    • 84887397466 scopus 로고    scopus 로고
    • Coastal Cutthroat Trout Symposium: Status, Management, Biology, and Conservation, Oregon Chapter, American Fisheries Society, Electronic document, (accessed 16.09.13)
    • Zydlewski J., Brunzell J., Hogle J., Clements S., Karnowski M., Schreck C. Seaward Migration of Coastal Cutthroat Trout Oncorhynchus clarkii clarkia from Four Tributaries of the Columbia River 2008, Coastal Cutthroat Trout Symposium: Status, Management, Biology, and Conservation, Oregon Chapter, American Fisheries Society, Electronic document, (accessed 16.09.13). http://s3.amazonaws.com/file-storage.INDIVIDUAL-ACTIVITIES-CooperativeResearchUnits.digitalmeasures.usgs.edu/jzydlewski/intellcont/Zydlewski%20et%20al2008%20Seaward%20Migration%20of%20Coastal%20Cutthroat%20Trout-1.pdf.
    • (2008) Seaward Migration of Coastal Cutthroat Trout Oncorhynchus clarkii clarkia from Four Tributaries of the Columbia River
    • Zydlewski, J.1    Brunzell, J.2    Hogle, J.3    Clements, S.4    Karnowski, M.5    Schreck, C.6


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