-
1
-
-
84995426697
-
Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom
-
this issue
-
Durand, N.C., Robinson, J.T., Shamim, M.S., Machol, I., Mesirov, J.P., Lander, E.S., Aiden, E.L., Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom. Cell Systems 3 (2016), 99–101 this issue.
-
(2016)
Cell Systems
, vol.3
, pp. 99-101
-
-
Durand, N.C.1
Robinson, J.T.2
Shamim, M.S.3
Machol, I.4
Mesirov, J.P.5
Lander, E.S.6
Aiden, E.L.7
-
2
-
-
79953300078
-
FIMO: scanning for occurrences of a given motif
-
Grant, C.E., Bailey, T.L., Noble, W.S., FIMO: scanning for occurrences of a given motif. Bioinformatics 27 (2011), 1017–1018.
-
(2011)
Bioinformatics
, vol.27
, pp. 1017-1018
-
-
Grant, C.E.1
Bailey, T.L.2
Noble, W.S.3
-
3
-
-
84880302753
-
A fast algorithm for matrix balancing
-
Knight, P.A., Ruiz, D., A fast algorithm for matrix balancing. IMA J. Numer. Anal. 33 (2012), 1029–1047.
-
(2012)
IMA J. Numer. Anal.
, vol.33
, pp. 1029-1047
-
-
Knight, P.A.1
Ruiz, D.2
-
4
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
Lieberman-Aiden, E., van Berkum, N.L., Williams, L., Imakaev, M., Ragoczy, T., Telling, A., Amit, I., Lajoie, B.R., Sabo, P.J., Dorschner, M.O., et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326 (2009), 289–293.
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
van Berkum, N.L.2
Williams, L.3
Imakaev, M.4
Ragoczy, T.5
Telling, A.6
Amit, I.7
Lajoie, B.R.8
Sabo, P.J.9
Dorschner, M.O.10
-
5
-
-
84919949716
-
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping
-
Rao, S.S., Huntley, M.H., Durand, N.C., Stamenova, E.K., Bochkov, I.D., Robinson, J.T., Sanborn, A.L., Machol, I., Omer, A.D., Lander, E.S., et al. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell 159 (2014), 1665–1680.
-
(2014)
Cell
, vol.159
, pp. 1665-1680
-
-
Rao, S.S.1
Huntley, M.H.2
Durand, N.C.3
Stamenova, E.K.4
Bochkov, I.D.5
Robinson, J.T.6
Sanborn, A.L.7
Machol, I.8
Omer, A.D.9
Lander, E.S.10
-
6
-
-
84948403758
-
Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes
-
Sanborn, A.L., Rao, S.S.P., Huang, S.C., Durand, N.C., Huntley, M.H., Jewett, A.I., Bochkov, I.D., Chinnappan, D., Cutkosky, A., Li, J., et al. Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes. Proc. Natl. Acad. Sci. USA 112 (2015), E6456–E6465.
-
(2015)
Proc. Natl. Acad. Sci. USA
, vol.112
, pp. E6456-E6465
-
-
Sanborn, A.L.1
Rao, S.S.P.2
Huang, S.C.3
Durand, N.C.4
Huntley, M.H.5
Jewett, A.I.6
Bochkov, I.D.7
Chinnappan, D.8
Cutkosky, A.9
Li, J.10
-
7
-
-
84945122302
-
HiFive: a tool suite for easy and efficient HiC and 5C data analysis
-
Sauria, M.E., Phillips-Cremins, J.E., Corces, V.G., Taylor, J., HiFive: a tool suite for easy and efficient HiC and 5C data analysis. Genome Biol., 16, 2015, 237.
-
(2015)
Genome Biol.
, vol.16
, pp. 237
-
-
Sauria, M.E.1
Phillips-Cremins, J.E.2
Corces, V.G.3
Taylor, J.4
-
8
-
-
84940472481
-
HiCdat: a fast and easy-to-use Hi-C data analysis tool
-
Schmid, M.W., Grob, S., Grossniklaus, U., HiCdat: a fast and easy-to-use Hi-C data analysis tool. BMC Bioinformatics, 16, 2015, 277.
-
(2015)
BMC Bioinformatics
, vol.16
, pp. 277
-
-
Schmid, M.W.1
Grob, S.2
Grossniklaus, U.3
-
9
-
-
84952861819
-
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
-
Servant, N., Varoquaux, N., Lajoie, B.R., Viara, E., Chen, C.-J., Vert, J.-P., Heard, E., Dekker, J., Barillot, E., HiC-Pro: an optimized and flexible pipeline for Hi-C data processing. Genome Biol., 16, 2015, 259.
-
(2015)
Genome Biol.
, vol.16
, pp. 259
-
-
Servant, N.1
Varoquaux, N.2
Lajoie, B.R.3
Viara, E.4
Chen, C.-J.5
Vert, J.-P.6
Heard, E.7
Dekker, J.8
Barillot, E.9
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