Assembly of the Genome of the Disease Vector Aedes aegypti onto a Genetic Linkage Map Allows Mapping of Genes Affecting Disease Transmission

PLoS Neglected Tropical Diseases

Volumn 8, Issue 1, 2014, Pages 8-

  Juneja, Punita ^a   Osei Poku, Jewelna ^a   Ho, Yung S ^b   Ariani, Cristina V ^a   Palmer, William J ^a   Pain, Arnab ^b   Jiggins, Francis M ^a  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^b KING ABDULLAH UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Saudi Arabia)

Author keywords

[No Author keywords available]

Indexed keywords

AEDES AEGYPTI; ARTICLE; BRUGIA MALAYI; CHROMOSOME; CONTROLLED STUDY; DISEASE TRANSMISSION; GENE MAPPING; GENE SEQUENCE; GENETIC LINKAGE; GENOME; NONHUMAN; PROGENY; SINGLE NUCLEOTIDE POLYMORPHISM; SYNTENY; VIRUS ASSEMBLY; AEDES; ANIMAL; CHROMOSOME MAP; DISEASE CARRIER; GENE; GENETICS; INSECT GENOME;

AEDES; ANIMALS; CHROMOSOME MAPPING; GENES, INSECT; GENOME, INSECT; INSECT VECTORS; POLYMORPHISM, SINGLE NUCLEOTIDE;

EID: 84893749629     PISSN: 19352727     EISSN: 19352735     Source Type: Journal    
DOI: 10.1371/journal.pntd.0002652     Document Type: Article

References (43)

1. World Health Organization (2009) Dengue: Guidelines for Diagnosis, Treatment, Prevention and Control: 1-160.
2. Phillips ML, (2008) Dengue Reborn. Environ Health Perspect 116: 382-388.
3. Simmons CP, Farrar JJ, Chau NVV, Wills B, (2012) Dengue. N Engl J Med 366: 1423-1432.
4. Mousson L, Dauga C, Garrigues T, Schaffner F, Vazeille M, et al. (2005) Phylogeography of Aedes (Stegomyia) aegypti (L.) and Aedes (Stegomyia) albopictus (Skuse) (Diptera: Culicidae) based on mitochondrial DNA variations. Genet Res 86: 1-11.
5. Bouri N, Sell TK, Franco C, Adalja AA, Henderson DA, et al. (2012) Return of epidemic dengue in the United States: implications for the public health practitioner. Public Health Rep 127: 259-266.
6. Schliessmann DJ, Calheiros LB, (1974) A review of the status of yellow fever and Aedes aegypti eradication programs in the America. Mosq News 34: 1-9.
7. Eisen L, Moore CG, (2013) Aedes (Stegomyia) aegypti in the continental United States: a vector at the cool margin of its geographic range. J Med Entomol 50: 467-478.
8. Lacroix R, McKemey AR, Raduan N, Kwee Wee L, Hong Ming W, et al. (2012) Open field release of genetically engineered sterile male Aedes aegypti in Malaysia. PLoS One 7: e42771.
9. Walker T, Johnson PH, Moreira La, Iturbe-Ormaetxe I, Frentiu FD, et al. (2011) The wMel Wolbachia strain blocks dengue and invades caged Aedes aegypti populations. Nature 476: 450-453.
10. Hoffmann AA, Montgomery BL, Popovici J, Iturbe-Ormaetxe I, Johnson PH, et al. (2011) Successful establishment of Wolbachia in Aedes populations to suppress dengue transmission. Nature 476: 454-457.
11. Nene V, Wortman JR, Lawson D, Haas B, Kodira C, et al. (2007) Genome sequence of Aedes aegypti, a major arbovirus vector. Science 316: 1718-1723.
12. Arensburger P, Megy K, Waterhouse RM, Abrudan J, Amedeo P, et al. (2010) Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics. Science 330: 86-88.
13. Severson DW, Behura SK, (2012) Mosquito genomics: progress and challenges. Annu Rev Entomol 57: 143-166.
14. Brown SE, Severson DW, Smith LA, Knudson DL, (2001) Integration of the Aedes aegypti mosquito genetic linkage and physical maps. Genetics 157: 1299-1305.
15. Macdonald W, Sheppard P, (1965) Cross-over values in the sex chromosomes of the mosquito Aedes aegypti and evidence for the presence of inversions. Ann Trop Med Parasitol 59: 74-87.
16. Severson DW, (1994) Applications of molecular marker analysis to mosquito vector competence. Parasitol Today 10: 336-340.
17. Severson DW, Mori A, Zhang Y, Christensen BM, (1994) Chromosomal mapping of two loci affecting filarial worm susceptibility in Aedes aegypti. Insect Mol Biol 3: 67-72.
18. Bhalla SC, Craig GB, (1970) Linkage analysis of chromosome I of Aedes aegypti. Can J Genet Cytol 12: 425-435.
19. Severson DW, Meece JK, Lovin DD, Saha G, Morlais I, (2002) Linkage map organization of expressed sequence tags and sequence tagged sites in the mosquito, Aedes aegypti. Insect Mol Biol 11: 371-378.
20. Timoshevskiy VA, Severson DW, Debruyn BS, Black WC, Sharakhov I V, et al. (2013) An integrated linkage, chromosome, and genome map for the yellow fever mosquito Aedes aegypti. PLoS Negl Trop Dis 7: e2052.
21. Macdonald WW, (1962) The genetic basis of susceptibility to infection with semi-periodic Brugia malayi to Aedes aegypti. Ann Trop Med Parasitol 56: 373-382.
22. Paige C, Craig G Jr, (1975) Variation in filarial susceptibility among east African populations of Aedes aegypti. J Med Entomol 12: 485-493.
23. Rodriguez P, Craig G Jr, (1973) Susceptibility to Brugia pahangi in geographic strains of Aedes aegypti. Am J Trop Med Hygeine 22: 53-61.
24. Loxdale HD, Lushai G, (1998) Molecular markers in entomology. Bull Entomol Res 88: 577-600.
25. Zheng L, Benedict MQ, Cornel AJ, Collins FH, Kafatos FC, (1996) Integrated genetic map of the African human malaria vector mosquito, Anopheles gambiae. Genetics 143: 941-952.
26. Zheng L, Cornel AJ, Wang R, Erfle H, Voss H, et al. (1997) Quantitative trait loci for refractoriness of Anopheles gambiae to Plasmodium cynomolgi B. Science 276: 425-428.
27. Baird NA, Etter PD, Atwood TS, Currey MC, Shiver AL, et al. (2008) Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS One 3: e3376.
28. Perich MJ, Rocha NO, Castro AL, Alfaro AW, Platt KB, et al. (2003) Evaluation of the efficacy of lambda-cyhalothrin applied by three spray application methods for emergency control of Aedes aegypti in Costa Rica. J Am Mosq Control Assoc 19: 58-62.
29. Gordon A, Hannon GJ (2010) FastX Toolkit. Available: http://hannonlab.cshl.edu/fastx_toolkit/. Accessed 2013 June.
30. Lohse M, Bolger AM, Nagel A, Fernie AR, Lunn JE, et al. (2012) RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics. Nucleic Acids Res 40: W622-7.
31. Li H, Durbin R, (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
32. Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, et al. (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics 25: 2078-2079.
33. McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, et al. (2010) The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res 20: 1297-1303.
34. Danecek P, Auton A, Abecasis G, Albers CA, Banks E, et al. (2011) The variant call format and VCFtools. Bioinformatics 27: 2156-2158.
35. Wu Y, Bhat PR, Close TJ, Lonardi S, (2008) Efficient and accurate construction of genetic linkage maps from the minimum spanning tree of a graph. PLoS Genet 4: e1000212.
36. Megy K, Emrich SJ, Lawson D, Campbell D, Dialynas E, et al. (2012) VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics. Nucleic Acids Res 40: D729-34.
37. Rezvoy C, Charif D, Guéguen L, Marais G a B, (2007) MareyMap: an R-based tool with graphical interface for estimating recombination rates. Bioinformatics 23: 2188-2189.
38. Wilfert L, Gadau J, Schmid-Hempel P, (2007) Variation in genomic recombination rates among animal taxa and the case of social insects. Heredity 98: 189-197.
39. Fiston-Lavier A-S, Singh ND, Lipatov M, Petrov DA, (2010) Drosophila melanogaster recombination rate calculator. Gene 463: 18-20.
40. Pombi M, Stump AD, Della Torre A, Besansky NJ, (2006) Variation in recombination rate across the X chromosome of Anopheles gambiae. Am J Trop Med Hygeine 75: 901-903.
41. Marais G, Mouchiroud D, Duret L, (2003) Neutral effect of recombination on base composition in Drosophila. Genet Res 81: 79-87.
42. Carvalho AB, Clark AG, (1999) Intron size and natural selection. Nature 401: 344.
43. Dolgin ES, Charlesworth B, (2008) The effects of recombination rate on the distribution and abundance of transposable elements. Genetics 178: 2169-2177.