-
1
-
-
84873320525
-
Mechanisms of programmed DNA lesions and genomic instability in the immune system
-
Alt, F. W., Zhang, Y., Meng, F. L., Guo, C. & Schwer, B. Mechanisms of programmed DNA lesions and genomic instability in the immune system. Cell 152, 417-429 (2013)
-
(2013)
Cell
, vol.152
, pp. 417-429
-
-
Alt, F.W.1
Zhang, Y.2
Meng, F.L.3
Guo, C.4
Schwer, B.5
-
2
-
-
77950955761
-
Origin of chromosomal translocations in lymphoid cancer
-
Nussenzweig, A. & Nussenzweig, M. C. Origin of chromosomal translocations in lymphoid cancer. Cell 141, 27-38 (2010)
-
(2010)
Cell
, vol.141
, pp. 27-38
-
-
Nussenzweig, A.1
Nussenzweig, M.C.2
-
3
-
-
70449641054
-
Aid produces DNA double-strand breaks in non-ig genes and mature b cell lymphomas with reciprocal chromosome translocations
-
Robbiani, D. F. et al. AID produces DNA double-strand breaks in non-Ig genes and mature B cell lymphomas with reciprocal chromosome translocations. Mol. Cell 36, 631-641 (2009)
-
(2009)
Mol. Cell
, vol.36
, pp. 631-641
-
-
Robbiani, D.F.1
-
4
-
-
33749685322
-
Regulation of class-switch recombination and plasma cell differentiation by phosphatidylinositol 3-kinase signaling
-
Omori, S. A. et al. Regulation of class-switch recombination and plasma cell differentiation by phosphatidylinositol 3-kinase signaling. Immunity 25, 545-557 (2006)
-
(2006)
Immunity
, vol.25
, pp. 545-557
-
-
Omori, S.A.1
-
5
-
-
84879748062
-
Targeting btk with ibrutinib in relapsed chronic lymphocytic leukemia
-
Byrd, J. C. et al. Targeting BTK with ibrutinib in relapsed chronic lymphocytic leukemia. N. Engl. J. Med. 369, 32-42 (2013)
-
(2013)
N. Engl. J. Med.
, vol.369
, pp. 32-42
-
-
Byrd, J.C.1
-
6
-
-
84896693794
-
PI3K inhibition by idelalisib in patients with relapsed indolent lymphoma
-
Gopal, A. K. et al. PI3K inhibition by idelalisib in patients with relapsed indolent lymphoma. N. Engl. J. Med. 370, 1008-1018 (2014)
-
(2014)
N. Engl. J. Med.
, vol.370
, pp. 1008-1018
-
-
Gopal, A.K.1
-
7
-
-
84901712964
-
Idelalisib, an inhibitor of phosphatidylinositol 3-kinase p110, for relapsed/refractory chronic lymphocytic leukemia
-
Brown, J. R. et al. Idelalisib, an inhibitor of phosphatidylinositol 3-kinase p110, for relapsed/refractory chronic lymphocytic leukemia. Blood 123, 3390-3397 (2014)
-
(2014)
Blood
, vol.123
, pp. 3390-3397
-
-
Brown, J.R.1
-
8
-
-
84915822064
-
IPI-145 antagonizes intrinsic and extrinsic survival signals in chronic lymphocytic leukemia cells
-
Dong, S. et al. IPI-145 antagonizes intrinsic and extrinsic survival signals in chronic lymphocytic leukemia cells. Blood 124, 3583-3586 (2014)
-
(2014)
Blood
, vol.124
, pp. 3583-3586
-
-
Dong, S.1
-
9
-
-
80053558376
-
Genome-wide translocation sequencing reveals mechanisms of chromosome breaks and rearrangements in b cells
-
Chiarle, R. et al. Genome-wide translocation sequencing reveals mechanisms of chromosome breaks and rearrangements in B cells. Cell 147, 107-119 (2011)
-
(2011)
Cell
, vol.147
, pp. 107-119
-
-
Chiarle, R.1
-
10
-
-
84919903836
-
Convergent transcription at intragenic super-enhancers targets aid-initiated genomic instability
-
Meng, F. L. et al. Convergent transcription at intragenic super-enhancers targets AID-initiated genomic instability. Cell 159, 1538-1548 (2014)
-
(2014)
Cell
, vol.159
, pp. 1538-1548
-
-
Meng, F.L.1
-
11
-
-
84871806385
-
Bruton tyrosine kinase inhibitor ibrutinib (pci-32765) has significant activity in patients with relapsed/refractory b-cell malignancies
-
Advani, R. H. et al. Bruton tyrosine kinase inhibitor ibrutinib (PCI-32765) has significant activity in patients with relapsed/refractory B-cell malignancies. J. Clin. Oncol. 31, 88-94 (2013)
-
(2013)
J. Clin. Oncol.
, vol.31
, pp. 88-94
-
-
Advani, R.H.1
-
12
-
-
24944541376
-
Expression of activation-induced cytidine deaminase is regulated by cell division, providing a mechanistic basis for division-linked class switch recombination
-
Rush, J. S., Liu, M., Odegard, V. H., Unniraman, S. & Schatz, D. G. Expression of activation-induced cytidine deaminase is regulated by cell division, providing a mechanistic basis for division-linked class switch recombination. Proc. Natl Acad. Sci. USA 102, 13242-13247 (2005)
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 13242-13247
-
-
Rush, J.S.1
Liu, M.2
Odegard, V.H.3
Unniraman, S.4
Schatz, D.G.5
-
13
-
-
84887824378
-
Phosphoinositide 3-kinase gene mutation predisposes to respiratory infection and airway damage
-
Angulo, I. et al. Phosphoinositide 3-kinase gene mutation predisposes to respiratory infection and airway damage. Science 342, 866-871 (2013)
-
(2013)
Science
, vol.342
, pp. 866-871
-
-
Angulo, I.1
-
14
-
-
84891030577
-
Dominant-activating germline mutations in the gene encoding the PI(3)K catalytic subunit p110 result in T cell senescence and human immunodeficiency
-
Lucas, C. L. et al. Dominant-activating germline mutations in the gene encoding the PI(3)K catalytic subunit p110 result in T cell senescence and human immunodeficiency. Nat. Immunol. 15, 88-97 (2014)
-
(2014)
Nat. Immunol
, vol.15
, pp. 88-97
-
-
Lucas, C.L.1
-
15
-
-
80053502216
-
Translocation-capture sequencing reveals the extent and nature of chromosomal rearrangements in B lymphocytes
-
Klein, I. A. et al. Translocation-capture sequencing reveals the extent and nature of chromosomal rearrangements in B lymphocytes. Cell 147, 95-106 (2011)
-
(2011)
Cell
, vol.147
, pp. 95-106
-
-
Klein, I.A.1
-
16
-
-
84904294782
-
Developmental propagation of v(d)j recombination-associated DNA breaks and translocations in mature b cells via dicentric chromosomes
-
Hu, J., Tepsuporn, S., Meyers, R. M., Gostissa, M. & Alt, F. W. Developmental propagation of V(D)J recombination-associated DNA breaks and translocations in mature B cells via dicentric chromosomes. Proc. Natl Acad. Sci. USA 111, 10269-10274 (2014)
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 10269-10274
-
-
Hu, J.1
Tepsuporn, S.2
Meyers, R.M.3
Gostissa, M.4
Alt, F.W.5
-
17
-
-
78650308767
-
Deep-sequencing identification of the genomic targets of the cytidine deaminase aid and its cofactor rpa in b lymphocytes
-
Yamane, A. et al. Deep-sequencing identification of the genomic targets of the cytidine deaminase AID and its cofactor RPA in B lymphocytes. Nat. Immunol. 12, 62-69 (2011)
-
(2011)
Nat. Immunol
, vol.12
, pp. 62-69
-
-
Yamane, A.1
-
18
-
-
84919941546
-
B cell super-enhancers and regulatory clusters recruit aid tumorigenic activity
-
Qian, J. et al. B cell super-enhancers and regulatory clusters recruit AID tumorigenic activity. Cell 159, 1524-1537 (2014)
-
(2014)
Cell
, vol.159
, pp. 1524-1537
-
-
Qian, J.1
-
19
-
-
84947728969
-
Sequence-intrinsic mechanisms that target aid mutational outcomes on antibody genes
-
Yeap, L. S. et al. Sequence-Intrinsic Mechanisms that Target AID Mutational Outcomes on Antibody Genes. Cell 163, 1124-1137 (2015)
-
(2015)
Cell
, vol.163
, pp. 1124-1137
-
-
Yeap, L.S.1
-
20
-
-
77957239251
-
Activation-induced cytidine deaminase targets DNA at sites of RNA polymerase ii stalling by interaction with spt5
-
Pavri, R. et al. Activation-induced cytidine deaminase targets DNA at sites of RNA polymerase II stalling by interaction with Spt5. Cell 143, 122-133 (2010)
-
(2010)
Cell
, vol.143
, pp. 122-133
-
-
Pavri, R.1
-
21
-
-
84908162142
-
Noncoding RNA transcription targets aid to divergently transcribed loci in b cells
-
Pefanis, E. et al. Noncoding RNA transcription targets AID to divergently transcribed loci in B cells. Nature 514, 389-393 (2014)
-
(2014)
Nature
, vol.514
, pp. 389-393
-
-
Pefanis, E.1
-
22
-
-
0038336667
-
Neoplastic development in plasma cells
-
Potter, M. Neoplastic development in plasma cells. Immunol. Rev. 194, 177-195 (2003)
-
(2003)
Immunol. Rev.
, vol.194
, pp. 177-195
-
-
Potter, M.1
-
23
-
-
0035913362
-
Hypermutation of multiple proto-oncogenes in B-cell diffuse large-cell lymphomas
-
Pasqualucci, L. et al. Hypermutation of multiple proto-oncogenes in B-cell diffuse large-cell lymphomas. Nature 412, 341-346 (2001)
-
(2001)
Nature
, vol.412
, pp. 341-346
-
-
Pasqualucci, L.1
-
24
-
-
84945248976
-
Non-coding recurrent mutations in chronic lymphocytic leukaemia
-
Puente, X. S. et al. Non-coding recurrent mutations in chronic lymphocytic leukaemia. Nature 526, 519-524 (2015)
-
(2015)
Nature
, vol.526
, pp. 519-524
-
-
Puente, X.S.1
-
25
-
-
84945302209
-
Mutations driving cll and their evolution in progression and relapse
-
Landau, D. A. et al. Mutations driving CLL and their evolution in progression and relapse. Nature 526, 525-530 (2015)
-
(2015)
Nature
, vol.526
, pp. 525-530
-
-
Landau, D.A.1
-
26
-
-
84881225049
-
Targeting btk with ibrutinib in relapsed or refractory mantle-cell lymphoma
-
Wang, M. L. et al. Targeting BTK with ibrutinib in relapsed or refractory mantle-cell lymphoma. N. Engl. J. Med. 369, 507-516 (2013)
-
(2013)
N. Engl. J. Med.
, vol.369
, pp. 507-516
-
-
Wang, M.L.1
-
27
-
-
84888440844
-
B cell receptor signaling in chronic lymphocytic leukemia
-
Burger, J. A. & Chiorazzi, N. B cell receptor signaling in chronic lymphocytic leukemia. Trends Immunol. 34, 592-601 (2013)
-
(2013)
Trends Immunol
, vol.34
, pp. 592-601
-
-
Burger, J.A.1
Chiorazzi, N.2
-
28
-
-
84949518098
-
Whole-genome sequencing reveals activation-induced cytidine eaminase signatures during indolent chronic lymphocytic leukaemia evolution
-
Kasar, S. et al. Whole-genome sequencing reveals activation-induced cytidine eaminase signatures during indolent chronic lymphocytic leukaemia evolution. Nat. Commun. 6, 8866 (2015)
-
(2015)
Nat. Commun.
, vol.6
, pp. 8866
-
-
Kasar, S.1
-
29
-
-
77953955599
-
High expression of aid and active class switch recombination might account for a more aggressive disease in unmutated cll patients: Link with an activated microenvironment in CLL disease
-
Palacios, F. et al. High expression of AID and active class switch recombination might account for a more aggressive disease in unmutated CLL patients: link with an activated microenvironment in CLL disease. Blood 115, 4488-4496 (2010)
-
(2010)
Blood
, vol.115
, pp. 4488-4496
-
-
Palacios, F.1
-
30
-
-
69249236962
-
The b cell mutator aid promotes b lymphoid blast crisis and drug resistance in chronic myeloid leukemia
-
Klemm, L. et al. The B cell mutator AID promotes B lymphoid blast crisis and drug resistance in chronic myeloid leukemia. Cancer Cell 16, 232-245 (2009)
-
(2009)
Cancer Cell
, vol.16
, pp. 232-245
-
-
Klemm, L.1
-
31
-
-
0034268780
-
Class switch recombination and hypermutation require activation-induced cytidine deaminase (aid), a potential RNA editing enzyme
-
Muramatsu, M. et al. Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme. Cell 102, 553-563 (2000)
-
(2000)
Cell
, vol.102
, pp. 553-563
-
-
Muramatsu, M.1
-
32
-
-
79959868320
-
Magnetic-based purification of ntouched mouse germinal center b cells for ex vivo manipulation and biochemical analysis
-
Cato, M. H., Yau, I. W. & Rickert, R. C. Magnetic-based purification of ntouched mouse germinal center B cells for ex vivo manipulation and biochemical analysis. Nat. Protocols 6, 953-960 (2011)
-
(2011)
Nat. Protocols
, vol.6
, pp. 953-960
-
-
Cato, M.H.1
Yau, I.W.2
Rickert, R.C.3
-
33
-
-
0030687580
-
Deletional remodeling of c-mycderegulating chromosomal translocations
-
Kovalchuk, A. L., Müller, J. R. & Janz, S. Deletional remodeling of c-mycderegulating chromosomal translocations. Oncogene 15, 2369-2377 (1997)
-
(1997)
Oncogene
, vol.15
, pp. 2369-2377
-
-
Kovalchuk, A.L.1
Müller, J.R.2
Janz, S.3
-
34
-
-
4644257592
-
Aid is required for c-myc/igh chromosome translocations in vivo
-
Ramiro, A. R. et al. AID is required for c-myc/IgH chromosome translocations in vivo. Cell 118, 431-438 (2004)
-
(2004)
Cell
, vol.118
, pp. 431-438
-
-
Ramiro, A.R.1
-
35
-
-
79952422304
-
Quality control and preprocessing of metagenomic datasets
-
Schmieder, R. & Edwards, R. Quality control and preprocessing of metagenomic datasets. Bioinformatics 27, 863-864 (2011)
-
(2011)
Bioinformatics
, vol.27
, pp. 863-864
-
-
Schmieder, R.1
Edwards, R.2
-
36
-
-
67650711619
-
A clustering approach for identification of enriched domains from histone modification ChIP-seq data
-
Zang, C. et al. A clustering approach for identification of enriched domains from histone modification ChIP-seq data. Bioinformatics 25, 1952-1958 (2009)
-
(2009)
Bioinformatics
, vol.25
, pp. 1952-1958
-
-
Zang, C.1
-
37
-
-
33744832429
-
Genomic imbalances and patterns of karyotypic variability in mantle-cell lymphoma cell lines
-
Camps, J. et al. Genomic imbalances and patterns of karyotypic variability in mantle-cell lymphoma cell lines. Leuk. Res. 30, 923-934 (2006)
-
(2006)
Leuk. Res.
, vol.30
, pp. 923-934
-
-
Camps, J.1
-
38
-
-
69649109364
-
Circos: An information aesthetic for comparative genomics
-
Krzywinski, M. et al. Circos: an information aesthetic for comparative genomics. Genome Res. 19, 1639-1645 (2009)
-
(2009)
Genome Res.
, vol.19
, pp. 1639-1645
-
-
Krzywinski, M.1
-
39
-
-
78651271733
-
Integrative genomics viewer
-
Robinson, J. T. et al. Integrative genomics viewer. Nat. Biotechnol. 29, 24-26 (2011)
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 24-26
-
-
Robinson, J.T.1
-
40
-
-
84859210032
-
Fast gapped-read alignment with bowtie 2
-
Langmead, B. & Salzberg, S. L. Fast gapped-read alignment with Bowtie 2. Nat. Methods 9, 357-359 (2012)
-
(2012)
Nat. Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
41
-
-
77952567987
-
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
-
Heinz, S. et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell 38, 576-589 (2010)
-
(2010)
Mol. Cell
, vol.38
, pp. 576-589
-
-
Heinz, S.1
-
42
-
-
84924629414
-
Moderated estimation of fold change and dispersion for RNA-seq data with deseq2
-
Love, M. I., Huber, W. & Anders, S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 15, 550 (2014)
-
(2014)
Genome Biol.
, vol.15
, pp. 550
-
-
Love, M.I.1
Huber, W.2
Anders, S.3
-
43
-
-
39149099085
-
Two levels of protection for the b cell genome during somatic hypermutation
-
Liu, M. et al. Two levels of protection for the B cell genome during somatic hypermutation. Nature 451, 841-845 (2008).
-
(2008)
Nature
, vol.451
, pp. 841-845
-
-
Liu, M.1
|