Eubacterium

Molecular Detection of Human Bacterial Pathogens

Volumn , Issue , 2011, Pages 391-403

  Maukonen, Johanna ^a   Saarela, Maria ^a  

^a VTT TECHNICAL RESEARCH CENTRE OF FINLAND   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85016121190     PISSN: None     EISSN: None     Source Type: Book    
DOI: None     Document Type: Chapter

References (130)

1. Holdeman, J.V. et al., Descriptions of Eubacterium timidum sp. nov., Eubacterium brachy sp. nov., and Eubacterium nodatum sp. nov. isolated from human periodontitis, Int. J. Syst. Bacteriol., 30, 163, 1980.
2. Martin, S.A. et al., A comparison of the reactivity of Eubacterium species with localized and serum immunoglobulins from rapidly progressive and adult periodontitis patients, J. Periodontol., 59, 32, 1988.
3. Paster, B.J. et al., The breadth of bacterial diversity in the human periodontal pocket and other oral sites, Periodontology 2000, 42, 80, 2006.
4. Hahn, C., and Falkler, W.A., Antibodies in normal and diseased pulps reactive with microorganisms isolated from deep caries, J. Endodontol., 18, 28, 1992.
5. De Vries, J.J.C., Arents, N.L.A., and Manson, W.L., Campylobacter species isolated from extra-oro-intestinal abscesses: A report of four cases and literature review, Eur. J. Clin. Microbiol. Infect. Diseases, 27, 1119, 2008.
6. Hill, G.B., Ayers, O.M., and Kohan, A.P., Characteristics and sites of infection of Eubacterium nodatum, Eubacterium tim-idum, Eubacterium brachy, and other asaccharolytic eubacte-ria, J. Clin. Microbiol., 25, 1540, 1987.
7. Rochford, J.C., Pleuropulmonary infection associated with Eubacterium brachy, a new species of Eubacterium, J. Clin. Microbiol., 12, 722, 1980.
8. Munson, M.A. et al., Molecular and cultural analysis of the microflora associated with endodontic infections, J. Dent. Res., 81, 761, 2002.
9. Thiolas, A. et al., Eubacterium callanderi bacteremia: Report of the first case, J. Clin. Microbiol., 41, 2235, 2003.
10. Chapel, T. et al., The microbiological flora of penile ulcerations, J. Infect. Dis., 137, 50, 1978.
11. Hall, G., Nord, C.E., and Heimdahl, A., Elimination of bacte-raemia after dental extraction: Comparison of erythromycin and clindamycin for prophylaxis of infective endocarditis, J. Antimicrob. Chemother, 37, 783, 1996.
12. Thadepalli, H., and Gangopadhyay, P.K., Rapid diagnosis of anaerobic empyema by direct gas-liquid chromatography of pleural fluid, Chest, 77, 507, 1980.
13. Rodloff, A.C. et al., Identification and susceptibility patterns of anaerobic bacteria isolated from clinical specimens during a one-year period, Infection, 12, 395, 1984.
14. Rôças, I.N., Hülsmann, M., and Siqueira Jr., J.F., Microorganisms in root canal-treated teeth from a German population, J. Endodontol., 34, 926, 2008.
15. Fouad, A.F. et al., Molecular characterization of the presence of Eubacterium spp. and Streptococcus spp. in endodontic infections, Oral Microbiol. Immunol., 18, 249, 2003.
16. Cheeseman, S.L. et al., Phylogeny of oral asaccharolytic Eubacterium species determined by 16S ribosomal DNA sequence comparison and proposal of Eubacterium infir-mum sp. nov. and Eubacterium tardum sp. nov., Int. J. Syst. Bacteriol., 46, 957, 1996.
17. Spratt, D.A., Weightman, A.J., and Wade, W.G., Diversity of oral asaccharolytic Eubacterium species in periodontitis- identification of novel phylotypes representing uncultivated taxa, Oral Microbiol. Immunol., 14, 56, 1999.
18. Sungkanuparph, S., Chansirikarnjana, S., and Vorachit, M., Eubacterium bacteremia and colon cancer, Scand. J. Infect. Dis., 34, 941, 2002.
19. Brook, I., Isolation of non-sporing anaerobic rods from infections in children, J. Med. Microbiol., 45, 21, 1996.
20. Vigil, G.V. et al., Identification and antibiotic sensitivity of bacteria isolated from periapical lesions, J. Endodontol., 23, 110, 1997.
21. Lin, S., Sela, G., and Sprecher, H., Periopathogenic bacteria in persistent periapical lesions: An in vivo prospective study, J. Periodontol., 78, 905, 2007.
22. Poco Jr., S.E. et al., Eubacterium minutum sp. nov., isolated from human periodontal pockets, Int. J. Syst. Bacteriol., 46, 31, 1996.
23. Molander, A., Reit, C., and Dahlén, G., The antimicrobial effect of calcium hydroxide in root canals pretreated with 5% iodine potassium iodide, Dental Traumatol., 15, 205, 1999.
24. Faveri, M. et al., Microbiological profile of untreated subjects with localized aggressive periodontitis, J. Clin. Periodontol., 36, 739, 2009.
25. Haffajee, A.D. et al., Comparison between polymerase chain reaction-based and checkerboard DNA hybridization techniques for microbial assessment of subgingival plaque samples, J. Clin. Periodontol., 36, 642, 2009.
26. Haffajee, A.D. et al., Clinical and microbiological changes associated with the use of combined antimicrobial therapies to treat "refractory" periodontitis, J. Clin. Periodontol., 31, 869, 2004.
27. Haffajee, A.D., Teles, R.P., and Socransky, S.S., Association of Eubacterium nodatum and Treponema denticola with human periodontitis lesions, Oral Microbiol. Immunol., 21, 269, 2006.
28. Booth, V. et al., Gram-positive anaerobic bacilli in human periodontal disease, J. Periodontol. Res., 39, 213, 2004.
29. Colombo, A.P.V. et al., Subgingival microbiota of Brazilian subjects with untreated chronic periodontitis, J. Periodontol., 73, 360, 2002.
30. Vianna, M.E. et al., Microarrays complement culture methods for identification of bacteria in endodontic infections, Oral Microbiol. Immunol., 20, 253, 2005.
31. Hill, G.B., Eubacterium nodatum mimics Actinomyces in intrauterine device-associated infections and other settings within the female genital tract, Obstet. Gynecol., 79, 534, 1992.
32. Garre, M. et al., Fulminant Eubacterium plautii infection following dog bite in asplenic man, Lancet, 338, 384, 1991.
33. Orlando, G. et al., Eubacterium plautii infection in a kidney transplant recipient: A noteworthy case of pleural effusion and fever, Clin. Transplant., 22, 520, 2008.
34. Sassone, L.M. et al., A microbiological profile of symptomatic teeth with primary endodontic infections, J. Endodontol., 34, 541, 2008.
35. Sassone, L. et al., Evaluation of the microbiota of primary endodontic infections using checkerboard DNA-DNA hybridization, Oral Microbiol. Immunol., 22, 390, 2007.
36. Brennan, R.M. et al., Bacterial species in subgingival plaque and oral bone loss in postmenopausal women, J. Periodontol., 78, 1051, 2007.
37. Hall, G. et al., Prophylactic administration of penicillins for endocarditis does not reduce the incidence of postextraction bacteremia, Clin. Infect. Dis., 17, 188, 1993.
38. Mayanagi, G. et al., Detection frequency of periodontitis-associated bacteria by polymerase chain reaction in subgingival and supragingival plaque of periodontitis and healthy subjects, Oral Microbiol. Immunol., 19, 379, 2004.
39. Kumar, P.S. et al., New bacterial species associated with chronic periodontitis, J. Dent. Res., 82, 338, 2003.
40. Hashimura, T., Sato, M., and Hoshino, E., Detection of Slackia exigua, Mogibacterium timidum and Eubacterium saphenum from pulpal and periradicular samples using the Polymerase Chain Reaction (PCR) method, Int. Endod. J., 34, 463, 2001.
41. Kazor, C.E. et al., Diversity of bacterial populations on the tongue dorsa of patients with halitosis and healthy patients, J. Clin. Microbiol., 41, 558, 2003.
42. Uematsu, H. et al., Degradation of arginine and other amino acids by butyrate-producing asaccharolytic anaerobic grampositive rods in periodontal pockets, Arch. Oral Biol., 48, 423, 2003.
43. Lau, S.K.P. et al., Anaerobic, non-sporulating, gram-positive bacilli bacteraemia characterized by 16S rRNA gene sequencing, J. Med. Microbiol., 53, 1247, 2004.
44. Monif, G.R.G. et al., Cul de sac isolates from patients with endometritis salpingitis peritonitis and gonococcal endocervi-citis, Obstet. Gynecol., 126, 158, 1976.
45. DeHertogh, D., and York, M.K., Eubacterium tortuosum and Eubacterium ventriosum Bacteremia, Clin. Microbiol. Newsl., 3, 60, 1981.
46. Lou, M.A., Thadepalli, H., and Mandal, A.K., Safety and efficacy of mezlocillin: A single-drug therapy for penetrating abdominal trauma, J. Trauma, 28, 1541, 1988.
47. Williams, S.M., Hafner, S., and Sundram, Y., Liver granulomas due to Eubacterium tortuosum in a seven-week-old bob-white quail, Avian Dis., 51, 797, 2007.
48. Margaret, B.S., and Krywolap, G.N., Eubacterium yurii subsp. yurii sp. nov. and Eubacterium yurii subsp. marga-retiae subsp. nov.: Test tube brush bacteria from subgingival dental plaque, Int. J. Syst. Bacteriol., 36, 145, 1986.
49. Margaret, B.S., and Krywolap, G.N., Eubacterium yurii subsp. schtitka subsp. nov.: Test tube brush bacteria from subgingival dental plaque, Int. J. Syst. Bacteriol., 38, 207, 1988.
50. Rajasuo, A. et al., Bacteriologic findings in tonsillitis and pericoronitis, Clin. Infect. Dis., 23, 51, 1996.
51. Gomes, B.P.F.A., Lilley, J.D., and Drucker, D.B., Associations of endodontic symptoms and signs with particular combinations of specific bacteria, Int. Endod. J., 29, 69, 1996.
52. Rams, T.E. et al., Microbiological study of HIV-related periodontitis, J. Periodontol., 62, 74, 1991.
53. Bourne, K.A. et al., Bacteremia due to Bifidobacterium, Eubacterium or Lactobacillus. Twenty-one cases and review of the literature, Yale J. Biol. Med., 51, 505, 1978.
54. Chan, R.C., and Mercer, J., First Australian description of Eggerthella lenta bacteraemia identified by 16S rRNA gene sequencing, Pathology, 40, 409, 2008.
55. Sundqvist, G., Associations between microbial species in dental root canal infections, Oral Microbiol. Immunol., 7, 257, 1992.
56. Robertson, D., and Smith, A.J., The microbiology of the acute dental abscess, J. Med. Microbiol., 58, 155, 2009.
57. Siqueira Jr., J.F. et al., Bacteria in the apical root canal of teeth with primary apical periodontitis, Oral Surg., Oral Med., Oral Pathol., Oral Radiol. Endodontol., 107, 721, 2009.
58. Jacinto, R.C. et al., Bacterial examination of endodontic infections by clonal analysis in concert with denaturing high-performance liquid chromatography, Oral Microbiol. Immunol., 22, 403, 2007.
59. Siqueira Jr., J.F. et al., Cultivable bacteria in infected root canals as identified by 16S rRNA gene sequencing, Oral Microbiol. Immunol., 22, 266, 2007.
60. Preza, D. et al., Bacterial profiles of root caries in elderly patients, J. Clin. Microbiol., 46, 2015, 2008.
61. Preza, D. et al., Microarray analysis of the microflora of root caries in elderly, Eur. J. Clin. Microbiol. Infect. Dis., 28, 509, 2009.
62. Finegold, S.M., Sutter, V.L., and Mathisen, G.E., Normal indigenous intestinal flora. In Hentges, D.J. (Editor), Human Intestinal Microflora in Health and Disease, pp. 3-31, Academic Press, New York, NY, 1983.
63. Finegold, S.M., Attebery, H.R., and Sutter, V.L., Effect of diet on human fecal flora: Comparison of Japanese and American diets, Am. J. Clin. Nutr, 27, 1456, 1974.
64. Finegold, S.M. et al., Fecal bacteriology of colonic polyp patients and control patients, Cancer Res., 35, 3407, 1975.
65. Prevot, A.R., Études de systématique bactérienne, Ann.Inst. Pasteur (Paris), 60, 285, 1938.
66. Hill, G.B., Ayers, O.M., and Kohan, A.P., Characteristics and sites of infection of Eubacterium nodatum, Eubacterium tim-idum, Eubacterium brachy, and other asaccharolytic eubacte-ria, J. Clin. Microbiol., 25, 1540, 1987.
67. Jousimies-Somer, H.R. et al., Wadsworth - KTL Anaerobic Bacteriology Manual, 6th ed., Star Publishing Company, Belmont, CA, 2002.
68. Holt, J.G. et al., Genus Eubacterium.In Hensyl W.R. (Editor), Bergey's Manual of Determinative Bacteriology, 9th ed., p. 577, Williams & Wilkins, Baltimore, MD, 1994.
69. Hofstad, T., and Aasjord, P., Eubacterium plautii (Seguin 1928) comb. nov., Int. J. Syst. Bacteriol., 32, 346, 1982.
70. Andreesen, J.R., The genus Eubacterium.In Balows, A. et al. (Editors), The Prokaryotes, 2nd ed., pp. 1914-1924. SpringerVerlag, New York, NY, 1992.
71. Cato, E.P., Moore, L.V.H., and Moore, W.E.C., Fusobacterium alocis sp. nov. and Fusobacterium sulci sp. nov. from the human gingival sulcus, Int. J. Syst. Bacteriol., 35, 475, 1985.
72. Jalava, J., and Eerola, E., Phylogenetic analysis of Fusobacterium alocis and Fusobacterium sulci based on 16S rRNA gene sequences: Proposal of Filifactor alocis (Cato, Moore and Moore) comb. nov. and Eubacterium sulci (Cato, Moore and Moore) comb. nov., Int. J. Syst. Bacteriol., 49, 1375, 1999.
73. Baardsen, R. et al., Outer membrane protein pattern of Eubacterium plautii, J. Gen. Microbiol., 134, 1561, 1988.
74. Moore, W.E.C., and Holdeman-Moore, L.V., Genus Eubacterium.In Sneath, P.H.A. et al. (Editors), Bergeys Manual of Systematic Bacteriology, 2nd ed., pp. 1353-1373, Williams & Wilkins, Baltimore, MD, 1986.
75. Wade, W.G., The genus Eubacterium and related genera. In Stackebrandt, E. et al. (Editors), Prokaryotes, 4th ed., pp. 823-835, Springer, New York, NY, 2006.
76. Bahl, H., and Gottschalk, G., Microbial production of butanol/ acetone. In Rehm, H.J., and Reed, G. (Editors), Biotechnology, 6b, p. 1, VCH Verlagsgesellschaft, Weinheim, Germany, 1988.
77. Mountfort, D.O. et al., Eubacterium callanderi sp. nov. that demethoxylates O-methoxylated aromatic acids to volatile fatty acids, Int. J. Syst. Bacteriol., 38, 254, 1988.
78. Zindel, U. et al., Eubacterium acidaminophilum sp. nov., a versatile amino acid-degrading anaerobe producing or utilizing H2 or formate. Description and enzymatic studies, Arch. Microbiol., 150, 254, 1988.
79. Yarza, P. et al., The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains, Syst. Appl. Microbiol., 31, 241, 2008.
80. Cole, J.R. et al., The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis, Nucleic Acids Res., 37, D141, 2009.
81. Willems, A., and Collins, M.D., Phylogenetic relationships of the genera Acetobacterium and Eubacterium sensu stricto and reclassification of Eubacterium alactolyticum as Pseudoramibacter alactolyticus gen. nov., comb. nov., Int. J. Syst. Bacteriol., 46, 1083, 1996.
82. Collins, M.D. et al., The phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations, Int. J. Syst. Bacteriol., 44, 812, 1994.
83. Wiegel, J., Tanner, R., and Rainey, F.A., An introduction to the family Clostridiaceae. In Stackebrandt, E. et al. (Editors), Prokaryotes, 4th ed., pp. 654-678, Springer, New York, NY, 2006.
84. Wade, W.G. et al., The family Coriobacteriaceae: Reclassification of Eubacterium exiguum (Poco et al, 1996) and Peptostreptococcus heliotrinreducens (Lanigan 1976) as Slackia exigua gen. nov., comb. nov. and Slackia heliotrinire-ducens gen. nov., comb. nov., and Eubacterium lentum (Prevot 1938) as Eggerthella lenta gen. nov., comb. nov., Int. J. Syst. Bacteriol., 49, 595, 1999.
85. Kageyama, A., Benno, Y., and Nakase, T., Phylogenetic and phenotypic evidence for the transfer of Eubacterium aerofa-ciens to the genus Collinsella as Collinsella aerofaciens gen. nov., comb. nov., Int. J. Syst. Bacteriol., 49, 557, 1999.
86. Taras, D. et al., Reclassification of Eubacterium formicigen-erans Holdeman and Moore 1974 as Dorea formicigenerans gen. nov., comb. nov., and description of Dorea longicat-ena sp. nov., isolated from human faeces, Int. J. Syst. Evol. Microbiol., 52, 423, 2002.
87. Kageyama, A., Benno, Y., and Nakase, T., Phylogenic and phenotypic evidence for the transfer of Eubacterium fossor to the genus Atopobium as Atopobium fossor comb. nov., Microbiol. Immunol., 43, 389, 1999.
88. Nakazawa, F. et al., Description of Mogibacterium pumilum gen. nov., sp. nov. and Mogibacterium vescum gen. nov., sp. nov., and reclassification of Eubacterium timidum (Holdeman et al. 1980) as Mogibacterium timidum gen. nov., comb. nov., Int. J. Syst. Evol. Microbiol., 50, 679, 2000.
89. Ludwig, W. et al., Phylogenetic evidence for the transfer of Eubacterium suis to the genus Actinomyces as Actinomyces suis comb. nov., Int. J. Syst. Bacteriol., 42, 161, 1992.
90. Lawson, P.A. et al., Characterization of some Actinomyces-like isolates from human clinical specimens: Reclassification of Actinomyces suis (Soltys and Spratling) as Actinobaculum suis comb. nov. and description of Actinobaculum schaalii sp. nov., Int. J. Syst. Bacteriol., 47, 899, 1997.
91. Cheeseman, S.L. et al., Phylogeny of oral asaccharolytic Eubacterium species determined by 16S ribosomal DNA sequence comparison and proposal of Eubacterium infir-mum sp. nov. and Eubacterium tardum sp. nov., Int. J. Syst. Bacteriol., 46, 957, 1996.
92. Wade, W.G. et al., Eubacterium minutum is an earlier synonym of Eubacterium tardum and has priority, Int. J. Syst. Bacteriol., 49, 1939, 1999.
93. Barcenilla, A. et al., Phylogenetic relationships of butyrate-producing bacteria from the human gut, Appl. Environ. Microbiol., 66, 1654, 2000.
94. Cummings, J.H., and Macfarlane, G.T., Colonic microflora: Nutrition and health, Nutrition, 13, 476, 1997.
95. Hague, A., and Paraskeva, C., The short-chain fatty acid butyrate induces apoptosis in colorectal tumour cell lines, Eur. J. Cancer Prevent., 4, 359, 1995.
96. Abrahamse, S.L., Pool-Zobel, B.L., and Rechkemmer, G., Potential of short chain fatty acids to modulate the induction of DNA damage and changes in the intracellular calcium concentration by oxidative stress in isolated rat distal colon cells, Carcinogenesis, 20, 629, 1999.
97. Rosignoli, P. et al., Protective activity of butyrate on hydrogen peroxide-induced DNA damage in isolated human colono-cytes and HT29 tumour cells, Carcinogenesis, 22, 1675, 2001.
98. Schwiertz, A., Le Blay, G., and Blaut, M., Quantification of different Eubacterium spp. in human fecal samples with species-specific 16S rRNA-targeted oligonucleotide probes, Appl. Environ. Microbiol., 66, 375, 2000.
99. Simmering, R., Kleessen, B., and Blaut, M., Quantification of the flavonoid-degrading bacterium Eubacterium ramulus in human fecal samples with a species-specific oligonucleotide hybridization probe, Appl. Environ. Microbiol., 65, 3705, 1999.
100. Schneider, H. et al., Anaerobic transformation of quercetin-3-glucoside by bacteria from the human intestinal tract, Arch. Microbiol., 171, 81, 1999.
101. Freier, T.A. et al., Characterization of Eubacterium copros-tanoligenes sp. nov., a cholesterol-reducing anaerobe, Int. J. Syst. Bacteriol., 44, 137, 1994.
102. Li, L. et al., Effect of orally administered Eubacterium copros-tanoligenes ATCC 51222 on plasma cholesterol concentration in laying hens, Poult. Sci., 75, 743, 1996.
103. Li, L. et al., Effect of feeding of a cholesterol-reducing bacterium, Eubacterium coprostanoligenes, to germ-free mice, Lab. Anim. Sci., 48, 253, 1998.
104. Lau, S.K.P. et al., Anaerobic, non-sporulating, gram-positive bacilli bacteraemia characterized by 16S rRNA gene sequencing, J. Med. Microbiol., 53, 1247, 2004.
105. Maukonen, J. et al., Intra-individual diversity and similarity of salivary and faecal microbiota, J. Med. Microbiol., 57, 1560, 2008.
106. Maukonen, J. et al., PCR DGGE and RT-PCR DGGE show diversity and short-term temporal stability in the Clostridium coccoides-Eubacterium rectale group in the human intestinal microbiota, FEMSMicrobiol. Ecol., 58, 517, 2006.
107. Hillier, S.L., and Moncla, B.J., Peptostreptococcus, Propionibacterium, Eubacterium, and other nonsporeform-ing anaerobic gram-positive bacteria. In Murray, P.R. et al. (Editors), Manual of Clinical Microbiology, 6th ed., pp. 587-602, American Society for Microbiology, Washington D.C., 2005.
108. Morris, G.N., Winter, J., and Cato, E.P., Eubacterium desmo-lans sp. nov., a steroid desmolase-producing species from cat fecal flora, Int. J. Syst. Bacteriol., 36, 183, 1986.
109. Downes, J. et al., Characterisation of Eubacterium-like strains isolated from oral infections, J. Med. Microbiol., 50, 947, 2001.
110. Petti, C.A., Polage, C.R., and Schreckenberger, P., The role of 16S rRNA gene sequencing in identification of microorganisms misidentified by conventional methods, J. Clin. Microbiol., 43, 6123, 2005.
111. Lay, C. et al., Design and validation of 16S rRNA probes to enumerate members of the Clostridium leptum subgroup in human faecal microbiota, Environ. Microbiol., 7, 933, 2005.
112. Hold, G.L. et al., Oligonucleotide probes that detect quantitatively significant groups of butyrate-producing bacteria in human feces, Appl. Environ. Microbiol., 69, 4320, 2003.
113. Schwiertz, A. et al., Influence of resistant starch on the SCFA production and cell counts of butyrate-producing Eubacterium spp. in the human intestine, J. Appl. Microbiol., 93, 157, 2002.
114. Harmsen, H.J.M. et al., Extensive set of 16S rRNA-based probes for detection of bacteria in human feces, Appl. Environ. Microbiol., 68, 2982, 2002.
115. Walker, A.W. et al., pH and peptide supply can radically alter bacterial populations and short-chain fatty acid ratios within microbial communities from the human colon, Appl. Environ. Microbiol., 71, 3692, 2005.
116. Franks, A.H. et al., Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes, Appl. Environ. Microbiol., 64, 3336, 1998.
117. Sghir, A. et al., Quantification of bacterial groups within human fecal flora by oligonucleotide probe hybridization, Appl. Environ. Microbiol., 66, 2263, 2000.
118. Kageyama, A., and Benno, Y., Rapid detection of human fecal Eubacterium species and related genera by nested PCR method, Microbiol. Immunol., 45, 315, 2001.
119. Matsuki, T. et al., Development of 16S rRNA-gene-targeted group-specific primers for the detection and identification of predominant bacteria in human feces, Appl. Environ. Microbiol., 68, 5445, 2002.
120. Furet, J.-P. et al., Comparative assessment of human and farm animal faecal microbiota using real-time quantitative PCR, FEMSMicrobiol. Ecol., 68, 351, 2009.
121. Matsuki, T. et al., Use of 16S rRNA gene-targeted group-specific primers for real-time PCR analysis of predominant bacteria in human feces, Appl. Environ. Microbiol., 70, 7220, 2004.
122. Amann, R.I., In situ identification of microorganisms by whole cell hybridization with rRNA-targeted nucleic acid probes. In Molecular Microbial Ecology Manual, p. 1, Kluwer Academic Publishers, The Netherlands, 1995.
123. Holdeman, L.V., Cato, E.P., and Moore, W.E.C. (Editors), Anaerobe Laboratory Manual, 4th ed., Anaerobe Laboratory, Virginia Polytechnic Institute and State University, Blacksburg, VA, 1977.
124. Socransky, S.S. et al., Checkerboard' DNA-DNA hybridization, BioTechniques, 17, 788, 1994.
125. Wilmotte, A., Van Der Auwera, G., and De Wachter, R., Structure of the 16 S ribosomal RNA of the thermophilic cyanobacterium Chlorogloeopsis HTF ("Mastigocladus laminosus HTF") strain PCC7518, and phylogenetic analysis, FEBS Lett., 317, 96, 1993.
126. Muyzer, G., De Waal, E.C., and Uitterlinden, A.G., Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA, Appl. Environ. Microbiol., 59, 695, 1993.
127. Ben-Dov, E. et al., Advantage of using inosine at the 3' termini of 16S rRNA gene universal primers for the study of microbial diversity, Appl. Environ. Microbiol., 72, 6902, 2006.
128. Nadkarni, M.A. et al., Determination of bacterial load by realtime PCR using a broad-range (universal) probe and primers set, Microbiology, 148, 257, 2002.
129. Altschul, S.F. et al., Basic local alignment search tool, J. Mol. Biol., 215, 403, 1990.
130. Wang, Q. et al., Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy, Appl. Environ. Microbiol., 73, 5261, 2007.