-
1
-
-
34247488321
-
On homology searches by protein Blast and the characterization of the age of genes
-
Alba MM, Castresana J. 2007. On homology searches by protein Blast and the characterization of the age of genes. BMC Evol Biol. 7:53.
-
(2007)
BMC Evol Biol
, vol.7
, pp. 53
-
-
Alba, MM1
Castresana, J.2
-
2
-
-
84876572464
-
Evolutionary rate and duplicability in the Arabidopsis thaliana protein-protein interaction network
-
Alvarez-Ponce D, Fares MA. 2012. Evolutionary rate and duplicability in the Arabidopsis thaliana protein-protein interaction network. Genome Biol Evol. 4:1263–1274.
-
(2012)
Genome Biol Evol
, vol.4
, pp. 1263-1274
-
-
Alvarez-Ponce, D1
Fares, MA.2
-
3
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
Arabidopsis Genome Initiative 2000. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796–815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
4
-
-
84888618647
-
Pollen-specific, but not sperm-specific, genes show stronger purifying selection and higher rates of positive selection than sporophytic genes in Capsella grandiflora
-
Arunkumar R, Josephs EB, Williamson RJ, Wright SI. 2013. Pollen-specific, but not sperm-specific, genes show stronger purifying selection and higher rates of positive selection than sporophytic genes in Capsella grandiflora. Mol Biol Evol. 30:2475–2486.
-
(2013)
Mol Biol Evol
, vol.30
, pp. 2475-2486
-
-
Arunkumar, R1
Josephs, EB2
Williamson, RJ3
Wright, SI.4
-
6
-
-
0036209176
-
The evolution of plant sexual diversity
-
Barrett SC. 2002. The evolution of plant sexual diversity. Nat Rev Genet. 3:274–284.
-
(2002)
Nat Rev Genet
, vol.3
, pp. 274-284
-
-
Barrett, SC.1
-
7
-
-
84874271270
-
NCBI GEO: archive for functional genomics data sets–update
-
Barrett T, Wilhite SE, Ledoux P, et al. 2013. NCBI GEO: archive for functional genomics data sets–update. Nucleic Acids Res. 41:D991–D995.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D991-D995
-
-
Barrett, T1
Wilhite, SE2
Ledoux, P3
-
8
-
-
77950380766
-
Local-scale patterns of genetic variability, outcrossing, and spatial structure in natural stands of Arabidopsis thaliana
-
Bomblies K, Yant L, Laitinen RA, Kim ST, Hollister JD, Warthmann N, Fitz J, Weigel D. 2010. Local-scale patterns of genetic variability, outcrossing, and spatial structure in natural stands of Arabidopsis thaliana. PLoS Genet. 6:e1000890.
-
(2010)
PLoS Genet
, vol.6
, pp. e1000890
-
-
Bomblies, K1
Yant, L2
Laitinen, RA3
Kim, ST4
Hollister, JD5
Warthmann, N6
Fitz, J7
Weigel, D.8
-
9
-
-
57749111824
-
Comparative transcriptomics of Arabidopsis sperm cells
-
Borges F, Gomes G, Gardner R, Moreno N, McCormick S, Feijo JA, Becker JD. 2008. Comparative transcriptomics of Arabidopsis sperm cells. Plant Physiol. 148:1168–1181.
-
(2008)
Plant Physiol
, vol.148
, pp. 1168-1181
-
-
Borges, F1
Gomes, G2
Gardner, R3
Moreno, N4
McCormick, S5
Feijo, JA6
Becker, JD.7
-
10
-
-
80053384429
-
Whole-genome sequencing of multiple Arabidopsis thaliana populations
-
Cao J, Schneeberger K, Ossowski S, Günther T, Bender S, Fitz J, Koenig D, Lanz C, Stegle O, Lippert C, et al. 2011. Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nat Genet. 43:956–963.
-
(2011)
Nat Genet
, vol.43
, pp. 956-963
-
-
Cao, J1
Schneeberger, K2
Ossowski, S3
Günther, T4
Bender, S5
Fitz, J6
Koenig, D7
Lanz, C8
Stegle, O9
Lippert, C10
-
11
-
-
84930930741
-
Young genes out of the male: an insight from evolutionary age analysis of the pollen transcriptome
-
Cui X, Lv Y, Chen M, Nikoloski Z, Twell D, Zhang D. 2015. Young genes out of the male: an insight from evolutionary age analysis of the pollen transcriptome. Mol Plant. 8:935–945.
-
(2015)
Mol Plant
, vol.8
, pp. 935-945
-
-
Cui, X1
Lv, Y2
Chen, M3
Nikoloski, Z4
Twell, D5
Zhang, D.6
-
12
-
-
84861109134
-
PLEXdb: gene expression resources for plants and plant pathogens
-
Dash S, Hemert JV, Hong L, Wise RP, Dickerson JA. 2012. PLEXdb: gene expression resources for plants and plant pathogens. Nucleic Acids Res. 40:D1194–D1201.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D1194-D1201
-
-
Dash, S1
Hemert, JV2
Hong, L3
Wise, RP4
Dickerson, JA.5
-
13
-
-
78650141540
-
A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns
-
Domazet-Loso T, Tautz D. 2010. A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns. Nature 468:815–818.
-
(2010)
Nature
, vol.468
, pp. 815-818
-
-
Domazet-Loso, T1
Tautz, D.2
-
14
-
-
84929630779
-
Evidence for active maintenance of phylotranscriptomic hourglass patterns in animal and plant embryogenesis
-
Drost HG, Gabel A, Grosse I, Quint M. 2015. Evidence for active maintenance of phylotranscriptomic hourglass patterns in animal and plant embryogenesis. Mol Biol Evol. 32:1221–1231.
-
(2015)
Mol Biol Evol
, vol.32
, pp. 1221-1231
-
-
Drost, HG1
Gabel, A2
Grosse, I3
Quint, M.4
-
15
-
-
0028605603
-
Temporal colinearity and the phylotypic progression: a basis for the stability of a vertebrate Bauplan and the evolution of morphologies through heterochrony
-
Duboule D. 1994. Temporal colinearity and the phylotypic progression: a basis for the stability of a vertebrate Bauplan and the evolution of morphologies through heterochrony. Dev Suppl. 135–142.
-
(1994)
Dev Suppl
, pp. 135-142
-
-
Duboule, D.1
-
16
-
-
38549166729
-
PlantGDB: a resource for comparative plant genomics
-
Duvick J, Fu A, Muppirala U, Sabharwal M, Wilkerson MD, Lawrence CJ, Lushbough C, Brendel V. 2008. PlantGDB: a resource for comparative plant genomics. Nucleic Acids Res. 36:D959–D965.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. D959-D965
-
-
Duvick, J1
Fu, A2
Muppirala, U3
Sabharwal, M4
Wilkerson, MD5
Lawrence, CJ6
Lushbough, C7
Brendel, V.8
-
17
-
-
78651314945
-
Rice expression atlas in reproductive development
-
Fujita M, Horiuchi Y, Ueda Y, Mizuta Y, Kubo T, Yano K, Yamaki S, Tsuda K, Nagata T, Niihama M, et al. 2010. Rice expression atlas in reproductive development. Plant Cell Physiol. 51:2060–2081.
-
(2010)
Plant Cell Physiol
, vol.51
, pp. 2060-2081
-
-
Fujita, M1
Horiuchi, Y2
Ueda, Y3
Mizuta, Y4
Kubo, T5
Yano, K6
Yamaki, S7
Tsuda, K8
Nagata, T9
Niihama, M10
-
18
-
-
84856442556
-
Global analysis of expression profiles of rice receptor-like kinase genes
-
Gao LL, Xue HW. 2012. Global analysis of expression profiles of rice receptor-like kinase genes. Mol Plant. 5:143–153.
-
(2012)
Mol Plant
, vol.5
, pp. 143-153
-
-
Gao, LL1
Xue, HW.2
-
19
-
-
84927172726
-
Highly variable recombinational landscape modulates efficacy of natural selection in birds
-
Gossmann TI, Santure AW, Sheldon BC, Slate J, Zeng K. 2014. Highly variable recombinational landscape modulates efficacy of natural selection in birds. Genome Biol Evol. 6:2061–2075.
-
(2014)
Genome Biol Evol
, vol.6
, pp. 2061-2075
-
-
Gossmann, TI1
Santure, AW2
Sheldon, BC3
Slate, J4
Zeng, K.5
-
20
-
-
84895747717
-
Selection-driven evolution of sex-biased genes is consistent with sexual selection in Arabidopsis thaliana
-
Gossmann TI, Schmid MW, Grossniklaus U, Schmid KJ. 2014. Selection-driven evolution of sex-biased genes is consistent with sexual selection in Arabidopsis thaliana. Mol Biol Evol. 31:574–583.
-
(2014)
Mol Biol Evol
, vol.31
, pp. 574-583
-
-
Gossmann, TI1
Schmid, MW2
Grossniklaus, U3
Schmid, KJ.4
-
21
-
-
77954969511
-
Genome wide analyses reveal little evidence for adaptive evolution in many plant species
-
Gossmann TI, Song BH, Windsor AJ, Mitchell-Olds T, Dixon CJ, Kapralov MV, Filatov DA, Eyre-Walker A. 2010. Genome wide analyses reveal little evidence for adaptive evolution in many plant species. Mol Biol Evol. 27:1822–1832.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 1822-1832
-
-
Gossmann, TI1
Song, BH2
Windsor, AJ3
Mitchell-Olds, T4
Dixon, CJ5
Kapralov, MV6
Filatov, DA7
Eyre-Walker, A.8
-
22
-
-
79957514072
-
Plant germline development: a tale of cross-talk, signaling, and cellular interactions
-
Grossniklaus U. 2011. Plant germline development: a tale of cross-talk, signaling, and cellular interactions. Sex Plant Reprod. 24:91–95.
-
(2011)
Sex Plant Reprod
, vol.24
, pp. 91-95
-
-
Grossniklaus, U.1
-
23
-
-
63049085006
-
Genomic expression profiling of mature soybean (Glycine max) pollen
-
Haerizadeh F, Wong CE, Bhalla PL, Gresshoff PM, Singh MB. 2009. Genomic expression profiling of mature soybean (Glycine max) pollen. BMC Plant Biol. 9:25.
-
(2009)
BMC Plant Biol
, vol.9
, pp. 25
-
-
Haerizadeh, F1
Wong, CE2
Bhalla, PL3
Gresshoff, PM4
Singh, MB.5
-
24
-
-
17844410215
-
Transcriptome analysis of haploid male gametophyte development in Arabidopsis
-
Honys D, Twell D. 2004. Transcriptome analysis of haploid male gametophyte development in Arabidopsis. Genome Biol. 5:R85.
-
(2004)
Genome Biol
, vol.5
, pp. R85
-
-
Honys, D1
Twell, D.2
-
25
-
-
79955468851
-
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
-
Hu TT, Pattyn P, Bakker EG, et al. 2011. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nat Genet. 43:476–481.
-
(2011)
Nat Genet
, vol.43
, pp. 476-481
-
-
Hu, TT1
Pattyn, P2
Bakker, EG3
-
26
-
-
84907150192
-
The map-based sequence of the rice genome
-
International Rice Genome Sequencing Project 2005. The map-based sequence of the rice genome. Nature 436:793–800.
-
(2005)
Nature
, vol.436
, pp. 793-800
-
-
-
27
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP. 2003. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4:249–264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, RA1
Hobbs, B2
Collin, F3
Beazer-Barclay, YD4
Antonellis, KJ5
Scherf, U6
Speed, TP.7
-
28
-
-
78650120369
-
Gene expression divergence recapitulates the developmental hourglass model
-
Kalinka AT, Varga KM, Gerrard DT, Preibisch S, Corcoran DL, Jarrells J, Ohler U, Bergman CM, Tomancak P. 2010. Gene expression divergence recapitulates the developmental hourglass model. Nature 468:811–814.
-
(2010)
Nature
, vol.468
, pp. 811-814
-
-
Kalinka, AT1
Varga, KM2
Gerrard, DT3
Preibisch, S4
Corcoran, DL5
Jarrells, J6
Ohler, U7
Bergman, CM8
Tomancak, P.9
-
29
-
-
37249042614
-
Joint inference of the distribution of fitness effects of deleterious mutations and population demography based on nucleotide polymorphism frequencies
-
Keightley PD, Eyre-Walker A. 2007. Joint inference of the distribution of fitness effects of deleterious mutations and population demography based on nucleotide polymorphism frequencies. Genetics 177:2251–2261.
-
(2007)
Genetics
, vol.177
, pp. 2251-2261
-
-
Keightley, PD1
Eyre-Walker, A.2
-
30
-
-
77952382638
-
Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors
-
Le B, Cheng C, Bui A, Wagmaister J, Henry K, Pelletier J, Kwong L, Belmonte M, Kirkbride R, Horvath S, et al. 2010. Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors. Proc Natl Acad Sci U S A. 107:8063–8070.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 8063-8070
-
-
Le, B1
Cheng, C2
Bui, A3
Wagmaister, J4
Henry, K5
Pelletier, J6
Kwong, L7
Belmonte, M8
Kirkbride, R9
Horvath, S10
-
31
-
-
34250661465
-
Using genomics to study legume seed development
-
Le BH, Wagmaister JA, Kawashima T, Bui AQ, Harada JJ, Goldberg RB. 2007. Using genomics to study legume seed development. Plant Physiol. 144:562–574.
-
(2007)
Plant Physiol
, vol.144
, pp. 562-574
-
-
Le, BH1
Wagmaister, JA2
Kawashima, T3
Bui, AQ4
Harada, JJ5
Goldberg, RB.6
-
32
-
-
84876531652
-
PGDD: a database of gene and genome duplication in plants
-
Lee TH, Tang H, Wang X, Paterson AH. 2013. PGDD: a database of gene and genome duplication in plants. Nucleic Acids Res. 41:D1152–D1158.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D1152-D1158
-
-
Lee, TH1
Tang, H2
Wang, X3
Paterson, AH.4
-
33
-
-
84930751179
-
Sexual dimorphism and the evolution of sex-biased gene expression in the brown alga ectocarpus
-
Lipinska A, Cormier A, Luthringer R, Peters AF, Corre E, Gachon CMM, Cock JM, Coelho SM. 2015. Sexual dimorphism and the evolution of sex-biased gene expression in the brown alga ectocarpus. Mol Biol Evol. 32:1581–1597.
-
(2015)
Mol Biol Evol
, vol.32
, pp. 1581-1597
-
-
Lipinska, A1
Cormier, A2
Luthringer, R3
Peters, AF4
Corre, E5
Gachon, CMM6
Cock, JM7
Coelho, SM.8
-
34
-
-
77950547216
-
Probing the reproducibility of leaf growth and molecular phenotypes: a comparison of three Arabidopsis accessions cultivated in ten laboratories
-
Massonnet C, Vile D, Fabre J, Hannah M, Caldana C, Lisec J, Beemster G, Meyer R, Messerli G, Gronlunt J, et al. 2010. Probing the reproducibility of leaf growth and molecular phenotypes: a comparison of three Arabidopsis accessions cultivated in ten laboratories. Plant Physiol. 152:2142–2157.
-
(2010)
Plant Physiol
, vol.152
, pp. 2142-2157
-
-
Massonnet, C1
Vile, D2
Fabre, J3
Hannah, M4
Caldana, C5
Lisec, J6
Beemster, G7
Meyer, R8
Messerli, G9
Gronlunt, J10
-
35
-
-
0037067638
-
Generation of self-incompatible Arabidopsis thaliana by transfer of two S locus genes from A. lyrata
-
Nasrallah ME, Liu P, Nasrallah JB. 2002. Generation of self-incompatible Arabidopsis thaliana by transfer of two S locus genes from A. lyrata. Science 297:247–249.
-
(2002)
Science
, vol.297
, pp. 247-249
-
-
Nasrallah, ME1
Liu, P2
Nasrallah, JB.3
-
36
-
-
84883257856
-
Genome-wide transcriptomic analysis of the sporophyte of the moss Physcomitrella patens
-
O’Donoghue MT, Chater C, Wallace S, Gray JE, Beerling DJ, Fleming AJ. 2013. Genome-wide transcriptomic analysis of the sporophyte of the moss Physcomitrella patens. J Exp Bot. 64:3567–3581.
-
(2013)
J Exp Bot
, vol.64
, pp. 3567-3581
-
-
O’Donoghue, MT1
Chater, C2
Wallace, S3
Gray, JE4
Beerling, DJ5
Fleming, AJ.6
-
37
-
-
75549086594
-
InParanoid 7: new algorithms and tools for eukaryotic orthology analysis
-
Ostlund G, Schmitt T, Forslund K, Köstler T, Messina DN, Roopra S, Frings O, Sonnhammer ELL. 2010. InParanoid 7: new algorithms and tools for eukaryotic orthology analysis. Nucleic Acids Res. 38: D196–D203.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. D196-D203
-
-
Ostlund, G1
Schmitt, T2
Forslund, K3
Köstler, T4
Messina, DN5
Roopra, S6
Frings, O7
Sonnhammer, ELL.8
-
38
-
-
84872546066
-
The evolutionary causes and consequences of sex-biased gene expression
-
Parsch J, Ellegren H. 2013. The evolutionary causes and consequences of sex-biased gene expression. Nat Rev Genet. 14:83–87.
-
(2013)
Nat Rev Genet
, vol.14
, pp. 83-87
-
-
Parsch, J1
Ellegren, H.2
-
39
-
-
58449137410
-
The Sorghum bicolor genome and the diversification of grasses
-
Paterson AH, Bowers JE, Bruggmann R, et al. 2009. The Sorghum bicolor genome and the diversification of grasses. Nature 457:551–556.
-
(2009)
Nature
, vol.457
, pp. 551-556
-
-
Paterson, AH1
Bowers, JE2
Bruggmann, R3
-
40
-
-
84876872011
-
The hourglass and the early conservation models–co-existing patterns of developmental constraints in vertebrates
-
Piasecka B, Lichocki P, Moretti S, Bergmann S, Robinson-Rechavi M. 2013. The hourglass and the early conservation models–co-existing patterns of developmental constraints in vertebrates. PLoS Genet. 9:e1003476.
-
(2013)
PLoS Genet
, vol.9
, pp. e1003476
-
-
Piasecka, B1
Lichocki, P2
Moretti, S3
Bergmann, S4
Robinson-Rechavi, M.5
-
41
-
-
26944493068
-
Gene family analysis of the Arabidopsis pollen transcriptome reveals biological implications for cell growth, division control, and gene expression regulation
-
Pina C, Pinto F, Feijo JA, Becker JD. 2005. Gene family analysis of the Arabidopsis pollen transcriptome reveals biological implications for cell growth, division control, and gene expression regulation. Plant Physiol. 138:744–756.
-
(2005)
Plant Physiol
, vol.138
, pp. 744-756
-
-
Pina, C1
Pinto, F2
Feijo, JA3
Becker, JD.4
-
42
-
-
84867068639
-
A transcriptomic hourglass in plant embryogenesis
-
Quint M, Drost HG, Gabel A, Ullrich KK, Bönn M, Grosse I. 2012. A transcriptomic hourglass in plant embryogenesis. Nature 490:98–101.
-
(2012)
Nature
, vol.490
, pp. 98-101
-
-
Quint, M1
Drost, HG2
Gabel, A3
Ullrich, KK4
Bönn, M5
Grosse, I.6
-
43
-
-
78149432467
-
Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication
-
Rapp RA, Haigler CH, Flagel L, Hovav RH, Udall JA, Wendel JF. 2010. Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication. BMC Biol. 8:139.
-
(2010)
BMC Biol
, vol.8
, pp. 139
-
-
Rapp, RA1
Haigler, CH2
Flagel, L3
Hovav, RH4
Udall, JA5
Wendel, JF.6
-
44
-
-
0035861990
-
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
-
Remm M, Storm CE, Sonnhammer EL. 2001. Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J Mol Biol. 314:1041–1052.
-
(2001)
J Mol Biol
, vol.314
, pp. 1041-1052
-
-
Remm, M1
Storm, CE2
Sonnhammer, EL.3
-
45
-
-
1842505238
-
Rapid evolution of a pollen-specific oleosin-like gene family from Arabidopsis thaliana and closely related species
-
Schein M, Yang Z, Mitchell-Olds T, Schmid KJ. 2004. Rapid evolution of a pollen-specific oleosin-like gene family from Arabidopsis thaliana and closely related species. Mol Biol Evol. 21:659–669.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 659-669
-
-
Schein, M1
Yang, Z2
Mitchell-Olds, T3
Schmid, KJ.4
-
46
-
-
16244362244
-
A gene expression map of Arabidopsis thaliana development
-
Schmid M, Davison TS, Henz SR, Pape UJ, Demar M, Vingron M, Schölkopf B, Weigel D, Lohmann JU. 2005. A gene expression map of Arabidopsis thaliana development. Nat Genet. 37:501–506.
-
(2005)
Nat Genet
, vol.37
, pp. 501-506
-
-
Schmid, M1
Davison, TS2
Henz, SR3
Pape, UJ4
Demar, M5
Vingron, M6
Schölkopf, B7
Weigel, D8
Lohmann, JU.9
-
47
-
-
84856304664
-
A powerful method for transcriptional profiling of specific cell types in eukaryotes: laser-assisted microdissection and RNA sequencing
-
Schmid MW, Schmidt A, Klostermeier UC, Barann M, Rosenstiel P, Grossniklaus U. 2012. A powerful method for transcriptional profiling of specific cell types in eukaryotes: laser-assisted microdissection and RNA sequencing. PLoS One 7:e29685.
-
(2012)
PLoS One
, vol.7
, pp. e29685
-
-
Schmid, MW1
Schmidt, A2
Klostermeier, UC3
Barann, M4
Rosenstiel, P5
Grossniklaus, U.6
-
48
-
-
80053305681
-
Transcriptome analysis of the Arabidopsis megaspore mother cell uncovers the importance of RNA helicases for plant germline development
-
Schmidt A, Wuest SE, Vijverberg K, Baroux C, Kleen D, Grossniklaus U. 2011. Transcriptome analysis of the Arabidopsis megaspore mother cell uncovers the importance of RNA helicases for plant germline development. PLoS Biol. 9:e1001155.
-
(2011)
PLoS Biol
, vol.9
, pp. e1001155
-
-
Schmidt, A1
Wuest, SE2
Vijverberg, K3
Baroux, C4
Kleen, D5
Grossniklaus, U.6
-
49
-
-
74549221016
-
Genome sequence of the palaeopolyploid soybean
-
Schmutz JK, Cannon S, Schlueter J, Ma J, Mitros T, Nelson W, Hyten D, Song Q, Thelen J, Cheng J, et al. 2010. Genome sequence of the palaeopolyploid soybean. Nature 463:178–183.
-
(2010)
Nature
, vol.463
, pp. 178-183
-
-
Schmutz, JK1
Cannon, S2
Schlueter, J3
Ma, J4
Mitros, T5
Nelson, W6
Hyten, D7
Song, Q8
Thelen, J9
Cheng, J10
-
50
-
-
84903517143
-
A reference genome for common bean and genome-wide analysis of dual domestications
-
Schmutz J, McClean PE, Mamidi S, et al. 2014. A reference genome for common bean and genome-wide analysis of dual domestications. Nat Genet. 46:707–713.
-
(2014)
Nat Genet
, vol.46
, pp. 707-713
-
-
Schmutz, J1
McClean, PE2
Mamidi, S3
-
51
-
-
0035173378
-
dbSNP: the NCBI database of genetic variation
-
Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. 2001. dbSNP: the NCBI database of genetic variation. Nucleic Acids Res. 29:308–311.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 308-311
-
-
Sherry, ST1
Ward, MH2
Kholodov, M3
Baker, J4
Phan, L5
Smigielski, EM6
Sirotkin, K.7
-
52
-
-
84859114543
-
Genomic determinants of protein evolution and polymorphism in Arabidopsis
-
Slotte T, Bataillon T, Hansen TT, Onge KS, Wright SI, Schierup MH. 2011. Genomic determinants of protein evolution and polymorphism in Arabidopsis. Genome Biol Evol. 3:1210–1219.
-
(2011)
Genome Biol Evol
, vol.3
, pp. 1210-1219
-
-
Slotte, T1
Bataillon, T2
Hansen, TT3
Onge, KS4
Wright, SI5
Schierup, MH.6
-
53
-
-
34447521864
-
Positive Darwinian selection at the imprinted medea locus in plants
-
Spillane C, Schmid KJ, Laoueille-Duprat S, Pien S, Escobar-Restrepo JM, Baroux C, Gagliardini V, Page DR, Wolfe KH, Grossniklaus U. 2007. Positive Darwinian selection at the imprinted medea locus in plants. Nature 448:349–352.
-
(2007)
Nature
, vol.448
, pp. 349-352
-
-
Spillane, C1
Schmid, KJ2
Laoueille-Duprat, S3
Pien, S4
Escobar-Restrepo, JM5
Baroux, C6
Gagliardini, V7
Page, DR8
Wolfe, KH9
Grossniklaus, U.10
-
54
-
-
78650445284
-
Estimation of the neutrality index
-
Stoletzki N, Eyre-Walker A. 2011. Estimation of the neutrality index. Mol Biol Evol. 28:63–70.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 63-70
-
-
Stoletzki, N1
Eyre-Walker, A.2
-
55
-
-
85047700164
-
The rapid evolution of reproductive proteins
-
Swanson WJ, Vacquier VD. 2002. The rapid evolution of reproductive proteins. Nat Rev Genet. 3:137–144.
-
(2002)
Nat Rev Genet
, vol.3
, pp. 137-144
-
-
Swanson, WJ1
Vacquier, VD.2
-
56
-
-
84902995537
-
Efficient purging of deleterious mutations in plants with haploid selfing
-
Szövenyi P, Devos N, Weston DJ, Yang X, Hock Z, Shaw JA, Shimizu KK, McDaniel SF, Wagner A. 2014. Efficient purging of deleterious mutations in plants with haploid selfing. Genome Biol Evol. 6:1238–1252.
-
(2014)
Genome Biol Evol
, vol.6
, pp. 1238-1252
-
-
Szövenyi, P1
Devos, N2
Weston, DJ3
Yang, X4
Hock, Z5
Shaw, JA6
Shimizu, KK7
McDaniel, SF8
Wagner, A.9
-
57
-
-
34548231062
-
The evolution of selfing in Arabidopsis thaliana
-
Tang C, Toomajian C, Sherman-Broyles S, Plagnol V, Guo YL, Hu TT, Clark RM, Nasrallah JB, Weigel D, Nordborg M. 2007. The evolution of selfing in Arabidopsis thaliana. Science 317:1070–1072.
-
(2007)
Science
, vol.317
, pp. 1070-1072
-
-
Tang, C1
Toomajian, C2
Sherman-Broyles, S3
Plagnol, V4
Guo, YL5
Hu, TT6
Clark, RM7
Nasrallah, JB8
Weigel, D9
Nordborg, M.10
-
58
-
-
57749119299
-
Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
-
Wang Y, Zhang WZ, Song LF, Zou JJ, Su Z, Wu WH. 2008. Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. Plant Physiol. 148:1201–1211.
-
(2008)
Plant Physiol
, vol.148
, pp. 1201-1211
-
-
Wang, Y1
Zhang, WZ2
Song, LF3
Zou, JJ4
Su, Z5
Wu, WH.6
-
59
-
-
77952683138
-
Genome-scale analysis and comparison of gene expression profiles in developing and germinated pollen in Oryza sativa
-
Wei LQ, Xu WY, Deng ZY, Su Z, Xue Y, Wang T. 2010. Genome-scale analysis and comparison of gene expression profiles in developing and germinated pollen in Oryza sativa. BMC Genomics 11:338.
-
(2010)
BMC Genomics
, vol.11
, pp. 338
-
-
Wei, LQ1
Xu, WY2
Deng, ZY3
Su, Z4
Xue, Y5
Wang, T.6
-
60
-
-
84879032810
-
Evolutionary consequences of self-fertilization in plants
-
Wright SI, Kalisz S, Slotte T. 2013. Evolutionary consequences of self-fertilization in plants. Proc Biol Sci. 280:20130133.
-
(2013)
Proc Biol Sci
, vol.280
, pp. 20130133
-
-
Wright, SI1
Kalisz, S2
Slotte, T.3
-
61
-
-
77949485461
-
Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes
-
Wuest SE, Vijverberg K, Schmidt A, Weiss M, Gheyselinck J, Lohr M, Wellmer F, Rahnenfuhrer J, von Mering C, Grossniklaus U. 2010. Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes. Curr Biol. 20:506–512.
-
(2010)
Curr Biol
, vol.20
, pp. 506-512
-
-
Wuest, SE1
Vijverberg, K2
Schmidt, A3
Weiss, M4
Gheyselinck, J5
Lohr, M6
Wellmer, F7
Rahnenfuhrer, J8
von Mering, C9
Grossniklaus, U.10
-
62
-
-
83455195465
-
Genome-wide transcriptome analysis of gametophyte development in Physcomitrella patens
-
Xiao L, Wang H, Wan P, Kuang T, He Y. 2011. Genome-wide transcriptome analysis of gametophyte development in Physcomitrella patens. BMC Plant Biol. 11:177.
-
(2011)
BMC Plant Biol
, vol.11
, pp. 177
-
-
Xiao, L1
Wang, H2
Wan, P3
Kuang, T4
He, Y.5
-
63
-
-
84896726932
-
Comparative evolutionary and developmental dynamics of the cotton (Gossypium hirsutum) fiber transcriptome
-
Yoo MJ, Wendel JF. 2014. Comparative evolutionary and developmental dynamics of the cotton (Gossypium hirsutum) fiber transcriptome. PLoS Genet. 10:e1004073.
-
(2014)
PLoS Genet
, vol.10
, pp. e1004073
-
-
Yoo, MJ1
Wendel, JF.2
-
64
-
-
34248669040
-
KaKs Calculator: calculating Ka and Ks through model selection and model averaging
-
Zhang Z, Li J, Zhao XQ, Wang J, Wong GKS, Yu J. 2006. KaKs Calculator: calculating Ka and Ks through model selection and model averaging. Genomics Proteomics Bioinformatics 4:259–263.
-
(2006)
Genomics Proteomics Bioinformatics
, vol.4
, pp. 259-263
-
-
Zhang, Z1
Li, J2
Zhao, XQ3
Wang, J4
Wong, GKS5
Yu, J.6
-
65
-
-
77957730958
-
The seed composition of Arabidopsis mutants for the group 3 sulfate transporters indicates a role in sulfate translocation within developing seeds
-
Zuber H, Davidian LC, Aubert G, Aime D, Belghazi M, Lugan R, Heintz D, Wirtz M, Hell R, Thompson R, et al. 2010. The seed composition of Arabidopsis mutants for the group 3 sulfate transporters indicates a role in sulfate translocation within developing seeds. Plant Physiol. 154:913–926.
-
(2010)
Plant Physiol
, vol.154
, pp. 913-926
-
-
Zuber, H1
Davidian, LC2
Aubert, G3
Aime, D4
Belghazi, M5
Lugan, R6
Heintz, D7
Wirtz, M8
Hell, R9
Thompson, R10
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