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Volumn 12, Issue 3, 2017, Pages

Model-based quantification of metabolic interactions from dynamic microbial-community data

Author keywords

[No Author keywords available]

Indexed keywords

ANAEROBIC CELL CULTURE; ARTICLE; CELL FUNCTION; CLOSTRIDIUM ACETOBUTYLICUM; CONTROLLED STUDY; MATHEMATICAL MODEL; MICROBIAL COMMUNITY; MICROBIAL METABOLISM; MICROBIAL POPULATION DYNAMICS; NONHUMAN; ORGANISMAL INTERACTION; PROTON TRANSPORT; QUANTITATIVE ANALYSIS; STOICHIOMETRY; WOLINELLA SUCCINOGENES; COCULTURE; GROWTH, DEVELOPMENT AND AGING; METABOLISM; SPECIES DIFFERENCE; THEORETICAL MODEL; WOLINELLA;

EID: 85014919668     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0173183     Document Type: Article
Times cited : (45)

References (47)
  • 1
    • 84947216877 scopus 로고    scopus 로고
    • The ecology of the microbiome: Networks, competition, and stability
    • 26542567
    • Coyte KZ, Schluter J, Foster KR. The ecology of the microbiome: Networks, competition, and stability. Science. 2015; 350(6261):663-666. doi: 10.1126/science.aad2602 PMID: 26542567
    • (2015) Science. , vol.350 , Issue.6261 , pp. 663-666
    • Coyte, K.Z.1    Schluter, J.2    Foster, K.R.3
  • 2
    • 22244486702 scopus 로고    scopus 로고
    • The sourdough microflora: Biodiversity and metabolic interactions
    • De Vuyst L, Neysens P. The sourdough microflora: biodiversity and metabolic interactions. Trends in Food Science & Technology. 2005; 16(1):43-56. doi: 10.1016/j.tifs.2004.02.012
    • (2005) Trends in Food Science & Technology. , vol.16 , Issue.1 , pp. 43-56
    • De Vuyst, L.1    Neysens, P.2
  • 4
    • 0028575652 scopus 로고
    • Metabolic interactions between anaerobic bacteria in methanogenic environments
    • 7747937
    • Stams AJ. Metabolic interactions between anaerobic bacteria in methanogenic environments. Antonie van Leeuwenhoek. 1994; 66(1-3):271-294. doi: 10.1007/BF00871644 PMID: 7747937
    • (1994) Antonie van Leeuwenhoek. , vol.66 , Issue.1-3 , pp. 271-294
    • Stams, A.J.1
  • 5
    • 84864579031 scopus 로고    scopus 로고
    • Microbial co-occurrence relationships in the human microbiome
    • 22807668
    • Faust K, Sathirapongsasuti JF, Izard J, Segata N, Gevers D, Raes J, et al. Microbial co-occurrence relationships in the human microbiome. PLoS Comput Biol. 2012; 8(7):e1002606-e1002606. doi: 10.1371/journal.pcbi.1002606 PMID: 22807668
    • (2012) PLoS Comput Biol. , vol.8 , Issue.7 , pp. e1002606-e1002606
    • Faust, K.1    Sathirapongsasuti, J.F.2    Izard, J.3    Segata, N.4    Gevers, D.5    Raes, J.6
  • 6
    • 84855949949 scopus 로고    scopus 로고
    • Using network analysis to explore co-occurrence patterns in soil microbial communities
    • 21900968
    • Barberán A, Bates ST, Casamayor EO, Fierer N. Using network analysis to explore co-occurrence patterns in soil microbial communities. The ISME journal. 2012; 6(2):343-351. doi: 10.1038/ismej.2011. 119 PMID: 21900968
    • (2012) The ISME Journal. , vol.6 , Issue.2 , pp. 343-351
    • Barberán, A.1    Bates, S.T.2    Casamayor, E.O.3    Fierer, N.4
  • 7
    • 84927157543 scopus 로고    scopus 로고
    • Systems modeling approaches for microbial community studies: From metagenomics to inference of the community structure
    • 25852671
    • Hanemaaijer M, Röling WF, Olivier BG, Khandelwal RA, Teusink B, Bruggeman FJ. Systems modeling approaches for microbial community studies: from metagenomics to inference of the community structure. Frontiers in microbiology. 2015; 6. doi: 10.3389/fmicb.2015.00213 PMID: 25852671
    • (2015) Frontiers in Microbiology. , vol.6
    • Hanemaaijer, M.1    Röling, W.F.2    Olivier, B.G.3    Khandelwal, R.A.4    Teusink, B.5    Bruggeman, F.J.6
  • 8
    • 84859907317 scopus 로고    scopus 로고
    • A road map for the development of community systems (CoSy) biology
    • 22450377
    • Zengler K, Palsson BO. A road map for the development of community systems (CoSy) biology. Nature Reviews Microbiology. 2012; 10(5):366-372. PMID: 22450377
    • (2012) Nature Reviews Microbiology. , vol.10 , Issue.5 , pp. 366-372
    • Zengler, K.1    Palsson, B.O.2
  • 9
    • 84897938434 scopus 로고    scopus 로고
    • Toward quantitative understanding on microbial community structure and functioning: A modeling-centered approach using degradation of marine oil spills as example
    • 24723922
    • Röling WF, van Bodegom PM. Toward quantitative understanding on microbial community structure and functioning: a modeling-centered approach using degradation of marine oil spills as example. Frontiers in microbiology. 2014; 5. doi: 10.3389/fmicb.2014.00125 PMID: 24723922
    • (2014) Frontiers in Microbiology. , pp. 5
    • Röling, W.F.1    Van Bodegom, P.M.2
  • 10
    • 79960939957 scopus 로고    scopus 로고
    • Ecosystems biology of microbial metabolism
    • 21592777
    • Klitgord N, Segre D. Ecosystems biology of microbial metabolism. Current opinion in biotechnology. 2011; 22(4):541-546. doi: 10.1016/j.copbio.2011.04.018 PMID: 21592777
    • (2011) Current Opinion in Biotechnology. , vol.22 , Issue.4 , pp. 541-546
    • Klitgord, N.1    Segre, D.2
  • 11
    • 84881110826 scopus 로고    scopus 로고
    • Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules
    • 23858463
    • Levy R, Borenstein E. Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules. Proceedings of the National Academy of Sciences. 2013; 110 (31):12804-12809. doi: 10.1073/pnas.1300926110 PMID: 23858463
    • (2013) Proceedings of the National Academy of Sciences. , vol.110 , Issue.31 , pp. 12804-12809
    • Levy, R.1    Borenstein, E.2
  • 13
    • 77954724818 scopus 로고    scopus 로고
    • Genome-scale metabolic modeling of a clostridial co-culture for consolidated bioprocessing
    • 20665645
    • Salimi F, Zhuang K, Mahadevan R. Genome-scale metabolic modeling of a clostridial co-culture for consolidated bioprocessing. Biotechnology journal. 2010; 5(7):726-738. doi: 10.1002/biot.201000159 PMID: 20665645
    • (2010) Biotechnology Journal. , vol.5 , Issue.7 , pp. 726-738
    • Salimi, F.1    Zhuang, K.2    Mahadevan, R.3
  • 14
    • 78650215306 scopus 로고    scopus 로고
    • Dynamic flux balance modeling of microbial co-cultures for efficient batch fermentation of glucose and xylose mixtures
    • 20882517
    • Hanly TJ, Henson MA. Dynamic flux balance modeling of microbial co-cultures for efficient batch fermentation of glucose and xylose mixtures. Biotechnology and bioengineering. 2011; 108(2):376-385. doi: 10.1002/bit.22954 PMID: 20882517
    • (2011) Biotechnology and Bioengineering. , vol.108 , Issue.2 , pp. 376-385
    • Hanly, T.J.1    Henson, M.A.2
  • 15
    • 84871588520 scopus 로고    scopus 로고
    • Systems-level characterization of a host-microbe metabolic symbiosis in the mammalian gut
    • 23022739
    • Heinken A, Sahoo S, Fleming RM, Thiele I. Systems-level characterization of a host-microbe metabolic symbiosis in the mammalian gut. Gut microbes. 2013; 4(1):3-15. doi: 10.4161/gmic.22370 PMID: 23022739
    • (2013) Gut Microbes. , vol.4 , Issue.1 , pp. 3-15
    • Heinken, A.1    Sahoo, S.2    Fleming, R.M.3    Thiele, I.4
  • 16
    • 78649677586 scopus 로고    scopus 로고
    • Environments that induce synthetic microbial ecosystems
    • 21124952
    • Klitgord N, Segre D. Environments that induce synthetic microbial ecosystems. PLoS Comput Biol. 2010; 6(11):e1001002. doi: 10.1371/journal.pcbi.1001002 PMID: 21124952
    • (2010) PLoS Comput Biol. , vol.6 , Issue.11 , pp. e1001002
    • Klitgord, N.1    Segre, D.2
  • 17
    • 84878575301 scopus 로고    scopus 로고
    • Community flux balance analysis for microbial consortia at balanced growth
    • 23741341
    • Khandelwal RA, Olivier BG, Röling WF, Teusink B, Bruggeman FJ. Community Flux Balance Analysis for Microbial Consortia at Balanced Growth. PloS one. 2013; 8(5):e64567. doi: 10.1371/journal.pone. 0064567 PMID: 23741341
    • (2013) PloS One , vol.8 , Issue.5 , pp. e64567
    • Khandelwal, R.A.1    Olivier, B.G.2    Röling, W.F.3    Teusink, B.4    Bruggeman, F.J.5
  • 18
    • 63849310200 scopus 로고    scopus 로고
    • Initial community evenness favours functionality under selective stress
    • 19270679
    • Wittebolle L, Marzorati M, Clement L, Balloi A, Daffonchio D, Heylen K, et al. Initial community evenness favours functionality under selective stress. Nature. 2009; 458(7238):623-626. doi: 10.1038/nature07840 PMID: 19270679
    • (2009) Nature. , vol.458 , Issue.7238 , pp. 623-626
    • Wittebolle, L.1    Marzorati, M.2    Clement, L.3    Balloi, A.4    Daffonchio, D.5    Heylen, K.6
  • 19
    • 48749084090 scopus 로고    scopus 로고
    • Community-based degradation of 4-chorosalicylate tracked on the single cell level
    • 18593643
    • Pawelczyk S, Abraham WR, Harms H, Müller S. Community-based degradation of 4-chorosalicylate tracked on the single cell level. Journal of microbiological methods. 2008; 75(1):117-126. doi: 10.1016/j.mimet.2008.05.018 PMID: 18593643
    • (2008) Journal of Microbiological Methods. , vol.75 , Issue.1 , pp. 117-126
    • Pawelczyk, S.1    Abraham, W.R.2    Harms, H.3    Müller, S.4
  • 20
    • 35748961389 scopus 로고    scopus 로고
    • Ethanol production from hydrolysed agricultural wastes using mixed culture of Zymomonas mobilis and Candida tropicalis
    • 17657407
    • Patle S, Lal B. Ethanol production from hydrolysed agricultural wastes using mixed culture of Zymomonas mobilis and Candida tropicalis. Biotechnology letters. 2007; 29(12):1839-1843. doi: 10.1007/s10529-007-9493-4 PMID: 17657407
    • (2007) Biotechnology Letters. , vol.29 , Issue.12 , pp. 1839-1843
    • Patle, S.1    Lal, B.2
  • 21
    • 0032124561 scopus 로고    scopus 로고
    • A simple spectrophotometric determination of nitrate in water, resin, and soil extracts
    • Yang J, Kim J, Skogley E, Schaff B. A simple spectrophotometric determination of nitrate in water, resin, and soil extracts. Soil Science Society of America Journal. 1998; 62(4):1108-1115. doi: 10.2136/sssaj1998.03615995006200040036x
    • (1998) Soil Science Society of America Journal. , vol.62 , Issue.4 , pp. 1108-1115
    • Yang, J.1    Kim, J.2    Skogley, E.3    Schaff, B.4
  • 22
    • 77952995796 scopus 로고    scopus 로고
    • Development of Real-Time PCR primer and probe sets for detecting degenerated and non-degenerated forms of the butanol-producing bacterium Clostridium acetobutylicum ATCC 824
    • 19798472
    • Lee SM, Cho MO, Um Y, Sang BI. Development of Real-Time PCR primer and probe sets for detecting degenerated and non-degenerated forms of the butanol-producing bacterium Clostridium acetobutylicum ATCC 824. Applied biochemistry and biotechnology. 2010; 161(1-8):75-83. doi: 10.1007/s12010-009-8788-4 PMID: 19798472
    • (2010) Applied Biochemistry and Biotechnology. , vol.161 , Issue.1-8 , pp. 75-83
    • Lee, S.M.1    Cho, M.O.2    Um, Y.3    Sang, B.I.4
  • 23
    • 84982113791 scopus 로고    scopus 로고
    • The Systems Biology Markup Language (SBML) Level 3 Package: Flux Balance Constraints
    • 26528567
    • Olivier BG, Bergmann FT. The Systems Biology Markup Language (SBML) Level 3 Package: Flux Balance Constraints. Journal of integrative bioinformatics. 2015; 12(2):269. doi: 10.2390/biecoll-jib-2015-269 PMID: 26528567
    • (2015) Journal of Integrative Bioinformatics. , vol.12 , Issue.2 , pp. 269
    • Olivier, B.G.1    Bergmann, F.T.2
  • 24
    • 78751584992 scopus 로고    scopus 로고
    • Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments
    • 20668487
    • Zhuang K, Izallalen M, Mouser P, Richter H, Risso C, Mahadevan R, et al. Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments. The ISME journal. 2010; 5(2):305-316. doi: 10.1038/ismej.2010.117 PMID: 20668487
    • (2010) The ISME Journal. , vol.5 , Issue.2 , pp. 305-316
    • Zhuang, K.1    Izallalen, M.2    Mouser, P.3    Richter, H.4    Risso, C.5    Mahadevan, R.6
  • 26
    • 1642457253 scopus 로고    scopus 로고
    • The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
    • 14642354
    • Mahadevan R, Schilling C. The effects of alternate optimal solutions in constraint-based genome-scale metabolic models. Metabolic engineering. 2003; 5(4):264-276. doi: 10.1016/j.ymben.2003.09.002 PMID: 14642354
    • (2003) Metabolic Engineering. , vol.5 , Issue.4 , pp. 264-276
    • Mahadevan, R.1    Schilling, C.2
  • 27
    • 79954986937 scopus 로고
    • The relationship between the nitrogen and carbon metabolism of Clostridium acetobutylicum
    • 16559425
    • Wilson P, Peterson W, Fred E. The relationship between the nitrogen and carbon metabolism of Clostridium acetobutylicum. Journal of bacteriology. 1930; 19(4):231. PMID: 16559425
    • (1930) Journal of Bacteriology. , vol.19 , Issue.4 , pp. 231
    • Wilson, P.1    Peterson, W.2    Fred, E.3
  • 28
    • 2042505103 scopus 로고
    • Fixation of isotopic nitrogen by Clostridium
    • 18120606
    • Rosenblum ED, Wilson P. Fixation of isotopic nitrogen by Clostridium. Journal of bacteriology. 1949; 57 (4):413. PMID: 18120606
    • (1949) Journal of Bacteriology. , vol.57 , Issue.4 , pp. 413
    • Rosenblum, E.D.1    Wilson, P.2
  • 29
    • 0035678686 scopus 로고    scopus 로고
    • Nitrogen-fixation genes and nitrogenase activity in Clostridium acetobutylicum and Clostridium beijerinckii
    • 11781802
    • Chen J, Toth J, Kasap M. Nitrogen-fixation genes and nitrogenase activity in Clostridium acetobutylicum and Clostridium beijerinckii. Journal of Industrial Microbiology and Biotechnology. 2001; 27(5):281-286. doi: 10.1038/sj.jim.7000083 PMID: 11781802
    • (2001) Journal of Industrial Microbiology and Biotechnology. , vol.27 , Issue.5 , pp. 281-286
    • Chen, J.1    Toth, J.2    Kasap, M.3
  • 30
    • 0017110857 scopus 로고
    • Inhibitory effects of H2 on growth of Clostridium cellobioparum
    • 779644
    • Chung KT. Inhibitory effects of H2 on growth of Clostridium cellobioparum. Applied and environmental microbiology. 1976; 31(3):342-348. PMID: 779644
    • (1976) Applied and Environmental Microbiology. , vol.31 , Issue.3 , pp. 342-348
    • Chung, K.T.1
  • 31
    • 0036708443 scopus 로고    scopus 로고
    • Dynamic Flux Balance Analysis of Diauxic Growth in Escherichia coli
    • 12202358
    • Mahadevan R, Edwards JS, Doyle FJ III. Dynamic Flux Balance Analysis of Diauxic Growth in Escherichia coli. Biophysical journal. 2002; 83(3):1331-1340. doi: 10.1016/S0006-3495(02)73903-9 PMID: 12202358
    • (2002) Biophysical Journal. , vol.83 , Issue.3 , pp. 1331-1340
    • Mahadevan, R.1    Edwards, J.S.2    Doyle, F.J.3
  • 33
    • 51849115840 scopus 로고    scopus 로고
    • Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network
    • 18758767
    • Lee J, Yun H, Feist AM, Palsson BØ, Lee SY. Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network. Applied microbiology and biotechnology. 2008; 80(5):849-862. doi: 10.1007/s00253-008-1654-4 PMID: 18758767
    • (2008) Applied Microbiology and Biotechnology. , vol.80 , Issue.5 , pp. 849-862
    • Lee, J.1    Yun, H.2    Feist, A.M.3    Palsson, B.Ø.4    Lee, S.Y.5
  • 34
    • 0020509776 scopus 로고
    • Energy metabolism and biosynthesis of Vibrio succinogenes growing with nitrate or nitrite as terminal electron acceptor
    • Bokranz M, Katz J, Schröder I, Roberton AM, Kröger A. Energy metabolism and biosynthesis of Vibrio succinogenes growing with nitrate or nitrite as terminal electron acceptor. Archives of Microbiology. 1983; 135(1):36-41. doi: 10.1007/BF00419479
    • (1983) Archives of Microbiology. , vol.135 , Issue.1 , pp. 36-41
    • Bokranz, M.1    Katz, J.2    Schröder, I.3    Roberton, A.M.4    Kröger, A.5
  • 35
    • 0026646868 scopus 로고
    • Comparative systematic study on "spirillum" 5175, Campylobacter and Wolinella species
    • Schumacher W, Kroneck PM, Pfennig N. Comparative systematic study on "Spirillum" 5175, Campylobacter and Wolinella species. Archives of microbiology. 1992; 158(4):287-293. doi: 10.1007/BF00245247
    • (1992) Archives of Microbiology. , vol.158 , Issue.4 , pp. 287-293
    • Schumacher, W.1    Kroneck, P.M.2    Pfennig, N.3
  • 36
    • 31144435316 scopus 로고    scopus 로고
    • Towards multidimensional genome annotation
    • 16418748
    • Reed JL, Famili I, Thiele I, Palsson BO. Towards multidimensional genome annotation. Nature Reviews Genetics. 2006; 7(2):130-141. doi: 10.1038/nrg1769 PMID: 16418748
    • (2006) Nature Reviews Genetics. , vol.7 , Issue.2 , pp. 130-141
    • Reed, J.L.1    Famili, I.2    Thiele, I.3    Palsson, B.O.4
  • 37
    • 33846015888 scopus 로고    scopus 로고
    • Analysis of growth of Lactobacillus plantarum WCFS1 on a complex medium using a genome-scale metabolic model
    • 17062565
    • Teusink B, Wiersma A, Molenaar D, Francke C, de Vos WM, Siezen RJ, et al. Analysis of growth of Lactobacillus plantarum WCFS1 on a complex medium using a genome-scale metabolic model. Journal of Biological Chemistry. 2006; 281(52):40041-40048. doi: 10.1074/jbc.M606263200 PMID: 17062565
    • (2006) Journal of Biological Chemistry. , vol.281 , Issue.52 , pp. 40041-40048
    • Teusink, B.1    Wiersma, A.2    Molenaar, D.3    Francke, C.4    De Vos, W.M.5    Siezen, R.J.6
  • 38
    • 84866090747 scopus 로고    scopus 로고
    • Optimal flux spaces of genome-scale stoichiometric models are determined by a few subnetworks
    • 22896812
    • Kelk SM, Olivier BG, Stougie L, Bruggeman FJ. Optimal flux spaces of genome-scale stoichiometric models are determined by a few subnetworks. Scientific reports. 2012; 2. doi: 10.1038/srep00580 PMID: 22896812
    • (2012) Scientific Reports. , pp. 2
    • Kelk, S.M.1    Olivier, B.G.2    Stougie, L.3    Bruggeman, F.J.4
  • 39
    • 0022187188 scopus 로고
    • Glucose fermentation by Clostridium butyricum grown under a self generated gas atmosphere in chemostat culture
    • Van Andel JG, Zoutberg GR, Crabbendam PM and Breure AM. Glucose fermentation by Clostridium butyricum grown under a self generated gas atmosphere in chemostat culture. Applied microbiology and biotechnology. 1985; 23(1):21-26. doi: 10.1007/BF02660113
    • (1985) Applied Microbiology and Biotechnology. , vol.23 , Issue.1 , pp. 21-26
    • Van Andel, J.G.1    Zoutberg, G.R.2    Crabbendam, P.M.3    Breure, A.M.4
  • 40
    • 84890833229 scopus 로고    scopus 로고
    • Inhibitory activity of reuterin, nisin, lysozyme and nitrite against vegetative cells and spores of dairy-related Clostridium species
    • 24361835
    • Ávila M, Gómez-Torres N, Hernández M, Garde S. Inhibitory activity of reuterin, nisin, lysozyme and nitrite against vegetative cells and spores of dairy-related Clostridium species. International journal of food microbiology. 2014; 172:70-75. doi: 10.1016/j.ijfoodmicro.2013.12.002 PMID: 24361835
    • (2014) International Journal of Food Microbiology. , vol.172 , pp. 70-75
    • Ávila, M.1    Gómez-Torres, N.2    Hernández, M.3    Garde, S.4
  • 41
    • 84905030166 scopus 로고    scopus 로고
    • Deciphering microbial interactions and detecting keystone species with co-occurrence networks
    • 24904535
    • Berry D, Widder S. Deciphering microbial interactions and detecting keystone species with co-occurrence networks. Frontiers in microbiology. 2014; 5. doi: 10.3389/fmicb.2014.00219 PMID: 24904535
    • (2014) Frontiers in Microbiology. , pp. 5
    • Berry, D.1    Widder, S.2
  • 42
    • 84858748000 scopus 로고    scopus 로고
    • Phylogenetic molecular ecological network of soil microbial communities in response to elevated CO2
    • 21791581
    • Zhou J, Deng Y, Luo F, He Z, Yang Y. Phylogenetic molecular ecological network of soil microbial communities in response to elevated CO2. MBio. 2011; 2(4):e00122-11. doi: 10.1128/mBio.00122-11 PMID: 21791581
    • (2011) MBio. , vol.2 , Issue.4 , pp. e00122-e00211
    • Zhou, J.1    Deng, Y.2    Luo, F.3    He, Z.4    Yang, Y.5
  • 43
    • 6044265058 scopus 로고    scopus 로고
    • Integration of gene expression data into genome-scale metabolic models
    • 15491858
    • Åkesson M, Förster J, Nielsen J. Integration of gene expression data into genome-scale metabolic models. Metabolic engineering. 2004; 6(4):285-293. doi: 10.1016/j.ymben.2003.12.002 PMID: 15491858
    • (2004) Metabolic Engineering. , vol.6 , Issue.4 , pp. 285-293
    • Åkesson, M.1    Förster, J.2    Nielsen, J.3
  • 44
    • 84897668947 scopus 로고    scopus 로고
    • A data integration and visualization resource for the metabolic network of Synechocystis sp. PCC 6803
    • Maarleveld TR, Boele J, Bruggeman FJ, Teusink B. A data integration and visualization resource for the metabolic network of Synechocystis sp. PCC 6803. Plant physiology. 2014; p. pp-113.
    • (2014) Plant Physiology , pp. 113
    • Maarleveld, T.R.1    Boele, J.2    Bruggeman, F.J.3    Teusink, B.4
  • 45
    • 77954197778 scopus 로고    scopus 로고
    • Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model
    • 20529914
    • Yizhak K, Benyamini T, Liebermeister W, Ruppin E, Shlomi T. Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model. Bioinformatics. 2010; 26(12):i255-i260. doi: 10.1093/bioinformatics/btq183 PMID: 20529914
    • (2010) Bioinformatics. , vol.26 , Issue.12 , pp. i255-i260
    • Yizhak, K.1    Benyamini, T.2    Liebermeister, W.3    Ruppin, E.4    Shlomi, T.5
  • 46
    • 84950335869 scopus 로고    scopus 로고
    • Networks of energetic and metabolic interactions define dynamics in microbial communities
    • 26621749
    • Embree M, Liu JK, Al-Bassam MM, Zengler K. Networks of energetic and metabolic interactions define dynamics in microbial communities. Proceedings of the National Academy of Sciences. 2015; 112 (50):15450-15455. doi: 10.1073/pnas.1506034112 PMID: 26621749
    • (2015) Proceedings of the National Academy of Sciences. , vol.112 , Issue.50 , pp. 15450-15455
    • Embree, M.1    Liu, J.K.2    Al-Bassam, M.M.3    Zengler, K.4
  • 47
    • 84905901158 scopus 로고    scopus 로고
    • The environmental controls that govern the end product of bacterial nitrate respiration
    • 25104387
    • Kraft B, Tegetmeyer HE, Sharma R, Klotz MG, Ferdelman TG, Hettich RL, et al. The environmental controls that govern the end product of bacterial nitrate respiration. Science. 2014; 345(6197):676-679. doi: 10.1126/science.1254070 PMID: 25104387
    • (2014) Science. , vol.345 , Issue.6197 , pp. 676-679
    • Kraft, B.1    Tegetmeyer, H.E.2    Sharma, R.3    Klotz, M.G.4    Ferdelman, T.G.5    Hettich, R.L.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.