-
1
-
-
38949125129
-
Clinical characteristics of Merkel cell carcinoma at diagnosis in 195 patients: The AEIOU features
-
Heath M, Jaimes N, Lemos B, Mostaghimi A, Wang LC, Peñas PF, Nghiem P. 2008. Clinical characteristics of Merkel cell carcinoma at diagnosis in 195 patients: the AEIOU features. J Am Acad Dermatol 58: 375-381. http://dx.doi.org/10.1016/j.jaad.2007.11.020.
-
(2008)
J am Acad Dermatol
, vol.58
, pp. 375-381
-
-
Heath, M.1
Jaimes, N.2
Lemos, B.3
Mostaghimi, A.4
Wang, L.C.5
Peñas, P.F.6
Nghiem, P.7
-
2
-
-
48549097605
-
Frequent detection of Merkel cell polyomavirus in human Merkel cell carcinomas and identification of a unique deletion in the VP1 gene
-
Kassem A, Schöpflin A, Diaz C, Weyers W, Stickeler E, Werner M, Zur Hausen A. 2008. Frequent detection of Merkel cell polyomavirus in human Merkel cell carcinomas and identification of a unique deletion in the VP1 gene. Cancer Res 68:5009-5013. http://dx.doi.org/10.1158/0008-5472.CAN-08-0949.
-
(2008)
Cancer Res
, vol.68
, pp. 5009-5013
-
-
Kassem, A.1
Schöpflin, A.2
Diaz, C.3
Weyers, W.4
Stickeler, E.5
Werner, M.6
Zur Hausen, A.7
-
3
-
-
77953787613
-
Merkel cell polyomavirus-infected Merkel cell carcinoma cells require expression of viral T antigens
-
Houben R, Shuda M, Weinkam R, Schrama D, Feng H, Chang Y, Moore PS, Becker JC. 2010. Merkel cell polyomavirus-infected Merkel cell carcinoma cells require expression of viral T antigens. J Virol 84: 7064-7072. http://dx.doi.org/10.1128/JVI.02400-09.
-
(2010)
J Virol
, vol.84
, pp. 7064-7072
-
-
Houben, R.1
Shuda, M.2
Weinkam, R.3
Schrama, D.4
Feng, H.5
Chang, Y.6
Moore, P.S.7
Becker, J.C.8
-
4
-
-
71049119364
-
Prevalence of MCPyV in Merkel cell carcinoma and non-MCC tumors
-
Andres C, Belloni B, Puchta U, Sander CA, Flaig MJ. 2010. Prevalence of MCPyV in Merkel cell carcinoma and non-MCC tumors. J Cutan Pathol 37:28-34. http://dx.doi.org/10.1111/j.1600-0560.2009.01352.x
-
(2010)
J Cutan Pathol
, vol.37
, pp. 28-34
-
-
Andres, C.1
Belloni, B.2
Puchta, U.3
Sander, C.A.4
Flaig, M.J.5
-
5
-
-
55849098118
-
T antigen mutations are a human tumor-specific signature for Merkel cell polyomavirus
-
Shuda M, Feng H, Kwun HJ, Rosen ST, Gjoerup O, Moore PS, Chang Y. 2008. T antigen mutations are a human tumor-specific signature for Merkel cell polyomavirus. Proc Natl Acad Sci U S A 105:16272-16277. http://dx.doi.org/10.1073/pnas.0806526105.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 16272-16277
-
-
Shuda, M.1
Feng, H.2
Kwun, H.J.3
Rosen, S.T.4
Gjoerup, O.5
Moore, P.S.6
Chang, Y.7
-
6
-
-
84881238348
-
Merkel cell polyomavirus large T antigen disrupts host genomic integrity and inhibits cellular proliferation
-
Li J, Wang X, Diaz J, Tsang SH, Buck CB, You J. 2013. Merkel cell polyomavirus large T antigen disrupts host genomic integrity and inhibits cellular proliferation. J Virol 87:9173-9188. http://dx.doi.org/10.1128/JVI.01216-13.
-
(2013)
J Virol
, vol.87
, pp. 9173-9188
-
-
Li, J.1
Wang, X.2
Diaz, J.3
Tsang, S.H.4
Buck, C.B.5
You, J.6
-
7
-
-
84977498107
-
Functional upregulation of the DNA cytosine deaminase APOBEC3B by polyomaviruses
-
Verhalen B, Starrett GJ, Harris RS, Jiang M. 2016. Functional upregulation of the DNA cytosine deaminase APOBEC3B by polyomaviruses. J Virol 90:6379-6386. http://dx.doi.org/10.1128/JVI.00771-16
-
(2016)
J Virol
, vol.90
, pp. 6379-6386
-
-
Verhalen, B.1
Starrett, G.J.2
Harris, R.S.3
Jiang, M.4
-
8
-
-
84901474270
-
In vivo and in vitro studies suggest a possible involvement of HPV infection in the early stage of breast carcinogenesis via APOBEC3B induction
-
Ohba K, Ichiyama K, Yajima M, Gemma N, Nikaido M, Wu Q, Chong P, Mori S, Yamamoto R, Wong JEL, Yamamoto N. 2014. In vivo and in vitro studies suggest a possible involvement of HPV infection in the early stage of breast carcinogenesis via APOBEC3B induction. PLoS One 9:e97787. http://dx.doi.org/10.1371/journal.pone.0097787.
-
(2014)
Plos One
, vol.9
-
-
Ohba, K.1
Ichiyama, K.2
Yajima, M.3
Gemma, N.4
Nikaido, M.5
Wu, Q.6
Chong, P.7
Mori, S.8
Yamamoto, R.9
Wong, J.10
Yamamoto, N.11
-
9
-
-
84883356320
-
Evidence for APOBEC3B mutagenesis in multiple human cancers
-
Burns MB, Temiz NA, Harris RS. 2013. Evidence for APOBEC3B mutagenesis in multiple human cancers. Nat Genet 45:977-983. http://dx.doi.org/10.1038/ng.2701.
-
(2013)
Nat Genet
, vol.45
, pp. 977-983
-
-
Burns, M.B.1
Temiz, N.A.2
Harris, R.S.3
-
10
-
-
84937759881
-
Identification of APOBEC3B promoter elements responsible for activation by human pap-illomavirus type 16 E6
-
Mori S, Takeuchi T, Ishii Y, Kukimoto I. 2015. Identification of APOBEC3B promoter elements responsible for activation by human pap-illomavirus type 16 E6. Biochem Biophys Res Commun 460:555-560. http://dx.doi.org/10.1016/j.bbrc.2015.03.068.
-
(2015)
Biochem Biophys Res Commun
, vol.460
, pp. 555-560
-
-
Mori, S.1
Takeuchi, T.2
Ishii, Y.3
Kukimoto, I.4
-
11
-
-
84920969941
-
Human papillomavirus E6 triggers upregulation of the antiviral and cancer genomic DNA deaminase APOBEC3B
-
Vieira VC, Leonard B, White EA, Starrett GJ, Temiz NA, Lorenz LD, Lee D, Soares MA, Lambert PF, Howley PM, Harris RS. 2014. Human papillomavirus E6 triggers upregulation of the antiviral and cancer genomic DNA deaminase APOBEC3B. mBio 5:e02234-14. http://dx.doi.org/10.1128/mBio.02234-14.
-
(2014)
Mbio
, vol.5
, pp. e02214-e02234
-
-
Vieira, V.C.1
Leonard, B.2
White, E.A.3
Starrett, G.J.4
Temiz, N.A.5
Lorenz, L.D.6
Lee, D.7
Soares, M.A.8
Lambert, P.F.9
Howley, P.M.10
Harris, R.S.11
-
12
-
-
84883432724
-
An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers
-
Roberts SA, Lawrence MS, Klimczak LJ, Grimm SA, Fargo D, Stojanov P, Kiezun A, Kryukov GV, Carter SL, Saksena G, Harris S, Shah RR, Resnick MA, Getz G, Gordenin DA. 2013. An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers. Nat Genet 45: 970-976. http://dx.doi.org/10.1038/ng.2702.
-
(2013)
Nat Genet
, vol.45
, pp. 970-976
-
-
Roberts, S.A.1
Lawrence, M.S.2
Klimczak, L.J.3
Grimm, S.A.4
Fargo, D.5
Stojanov, P.6
Kiezun, A.7
Kryukov, G.V.8
Carter, S.L.9
Saksena, G.10
Harris, S.11
Shah, R.R.12
Resnick, M.A.13
Getz, G.14
Gordenin, D.A.15
-
13
-
-
84861541343
-
Mutational processes molding the genomes of 21 breast cancers
-
Nik-Zainal S, Alexandrov LB, Wedge DC, Van Loo P, Greenman CD, Raine K, Jones D, Hinton J, Marshall J, Stebbings LA, Menzies A, Martin S, Leung K, Chen L, Leroy C, Ramakrishna M, Rance R, Lau KW, Mudie LJ, Varela I, McBride DJ, Bignell GR, Cooke SL, Shlien A, Gamble J, Whitmore I, Maddison M, Tarpey PS, Davies HR, Papaemmanuil E, Stephens PJ, McLaren S, Butler AP, Teague JW, Jönsson G, Garber JE, Silver D, Miron P, Fatima A, Boyault S, Langerød A, Tutt A, Martens JWM, Aparicio SA, Borg Å, Salomon AV, Thomas G, Børresen-Dale A-L, Richardson AL, Neuberger MS, Futreal PA, Campbell PJ, Stratton MR. 2012. Mutational processes molding the genomes of 21 breast cancers. Cell 149:979-993. http://dx.doi.org/10.1016/j.cell.2012.04.024.
-
(2012)
Cell
, vol.149
, pp. 979-993
-
-
Nik-Zainal, S.1
Alexandrov, L.B.2
Wedge, D.C.3
Van Loo, P.4
Greenman, C.D.5
Raine, K.6
Jones, D.7
Hinton, J.8
Marshall, J.9
Stebbings, L.A.10
Menzies, A.11
Martin, S.12
Leung, K.13
Chen, L.14
Leroy, C.15
Ramakrishna, M.16
Rance, R.17
Lau, K.W.18
Mudie, L.J.19
Varela, I.20
McBride, D.J.21
Bignell, G.R.22
Cooke, S.L.23
Shlien, A.24
Gamble, J.25
Whitmore, I.26
Maddison, M.27
Tarpey, P.S.28
Davies, H.R.29
Papaemmanuil, E.30
Stephens, P.J.31
McLaren, S.32
Butler, A.P.33
Teague, J.W.34
Jönsson, G.35
Garber, J.E.36
Silver, D.37
Miron, P.38
Fatima, A.39
Boyault, S.40
Langerød, A.41
Tutt, A.42
Martens, J.43
Aparicio, S.A.44
Borg, Å.45
Salomon, A.V.46
Thomas, G.47
Børresen-Dale, A.-L.48
Richardson, A.L.49
Neuberger, M.S.50
Futreal, P.A.51
Campbell, P.J.52
Stratton, M.R.53
more..
-
14
-
-
84882837534
-
Signatures of mutational processes in human cancer
-
Pearson JV, Puente XS, Raine K, Ramakrishna M, Richardson AL, Richter J, Rosenstiel P, Schlesner M, Schumacher TN, Span PN, Teague JW, Totoki Y, Tutt ANJ, Valdés-Mas R, van Buuren MM, van’t Veer L, Vincent-Salomon A, Waddell N, Yates LR, Zucman-Rossi J, Futreal PA, McDermott U, Lichter P, Meyerson M, Grimmond SM, Siebert R, Campo E, Shibata T, Pfister SM, Campbell PJ, Stratton MR. 2013. Signatures of mutational processes in human cancer. Nature 500: 415-421. http://dx.doi.org/10.1038/nature12477.
-
(2013)
Nature
, vol.500
, pp. 415-421
-
-
Pearson, J.V.1
Puente, X.S.2
Raine, K.3
Ramakrishna, M.4
Richardson, A.L.5
Richter, J.6
Rosenstiel, P.7
Schlesner, M.8
Schumacher, T.N.9
Span, P.N.10
Teague, J.W.11
Totoki, Y.12
Tutt, A.13
Valdés-Mas, R.14
Van Buuren, M.M.15
Van’T Veer, L.16
Vincent-Salomon, A.17
Waddell, N.18
Yates, L.R.19
Zucman-Rossi, J.20
Futreal, P.A.21
McDermott, U.22
Lichter, P.23
Meyerson, M.24
Grimmond, S.M.25
Siebert, R.26
Campo, E.27
Shibata, T.28
Pfister, S.M.29
Campbell, P.J.30
Stratton, M.R.31
more..
-
15
-
-
84873186179
-
Deciphering signatures of mutational processes operative in human cancer
-
Alexandrov LB, Nik-Zainal S, Wedge DC, Campbell PJ, Stratton MR. 2013. Deciphering signatures of mutational processes operative in human cancer. Cell Rep 3:246-259. http://dx.doi.org/10.1016/j.celrep.2012.12.008.
-
(2013)
Cell Rep
, vol.3
, pp. 246-259
-
-
Alexandrov, L.B.1
Nik-Zainal, S.2
Wedge, D.C.3
Campbell, P.J.4
Stratton, M.R.5
-
16
-
-
84907855592
-
Spatial and temporal diversity in genomic instability processes defines lung cancer evolution
-
de Bruin EC, McGranahan N, Mitter R, Salm M, Wedge DC, Yates L, Jamal-Hanjani M, Shafi S, Murugaesu N, Rowan AJ, Gronroos E, Muhammad MA, Horswell S, Gerlinger M, Varela I, Jones D, Marshall J, Voet T, Van Loo P, Rassl DM, Rintoul RC, Janes SM, Lee S-M, Forster M, Ahmad T, Lawrence D, Falzon M, Capitanio A, Harkins TT, Lee CC, Tom W, Teefe E, Chen S-C, Begum S, Rabinowitz A, Phillimore B, Spencer-Dene B, Stamp G, Szallasi Z, Matthews N, Stewart A, Campbell P, Swanton C. 2014. Spatial and temporal diversity in genomic instability processes defines lung cancer evolution. Science 346:251-256. http://dx.doi.org/10.1126/science.1253462.
-
(2014)
Science
, vol.346
, pp. 251-256
-
-
De Bruin, E.C.1
McGranahan, N.2
Mitter, R.3
Salm, M.4
Wedge, D.C.5
Yates, L.6
Jamal-Hanjani, M.7
Shafi, S.8
Murugaesu, N.9
Rowan, A.J.10
Gronroos, E.11
Muhammad, M.A.12
Horswell, S.13
Gerlinger, M.14
Varela, I.15
Jones, D.16
Marshall, J.17
Voet, T.18
Van Loo, P.19
Rassl, D.M.20
Rintoul, R.C.21
Janes, S.M.22
Lee, S.-M.23
Forster, M.24
Ahmad, T.25
Lawrence, D.26
Falzon, M.27
Capitanio, A.28
Harkins, T.T.29
Lee, C.C.30
Tom, W.31
Teefe, E.32
Chen, S.-C.33
Begum, S.34
Rabinowitz, A.35
Phillimore, B.36
Spencer-Dene, B.37
Stamp, G.38
Szallasi, Z.39
Matthews, N.40
Stewart, A.41
Campbell, P.42
Swanton, C.43
more..
-
17
-
-
39749113080
-
Clonal integration of a polyomavirus in human Merkel cell carcinoma
-
Feng H, Shuda M, Chang Y, Moore PS. 2008. Clonal integration of a polyomavirus in human Merkel cell carcinoma. Science 319:1096-1100. http://dx.doi.org/10.1126/science.1152586.
-
(2008)
Science
, vol.319
, pp. 1096-1100
-
-
Feng, H.1
Shuda, M.2
Chang, Y.3
Moore, P.S.4
-
18
-
-
84955498320
-
UV-associated mutations underlie the etiology of MCV-negative Merkel cell carcinomas
-
Wong SQ, Waldeck K, Vergara IA, Schröder J, Madore J, Wilmott JS, Colebatch AJ, De Paoli-Iseppi R, Li J, Lupat R, Semple T, Arnau GM, Fellowes A, Leonard JH, Hruby G, Mann GJ, Thompson JF, Cullinane C, Johnston M, Shackleton M, Sandhu S, Bowtell DDL, Johnstone RW, Fox SB, McArthur GA, Papenfuss AT, Scolyer RA, Gill AJ, Hicks RJ, Tothill RW. 2015. UV-associated mutations underlie the etiology of MCV-negative Merkel cell carcinomas. Cancer Res 75:5228-5234. http://dx.doi.org/10.1158/0008-5472.CAN-15-1877.
-
(2015)
Cancer Res
, vol.75
, pp. 5228-5234
-
-
Wong, S.Q.1
Waldeck, K.2
Vergara, I.A.3
Schröder, J.4
Madore, J.5
Wilmott, J.S.6
Colebatch, A.J.7
De Paoli-Iseppi, R.8
Li, J.9
Lupat, R.10
Semple, T.11
Arnau, G.M.12
Fellowes, A.13
Leonard, J.H.14
Hruby, G.15
Mann, G.J.16
Thompson, J.F.17
Cullinane, C.18
Johnston, M.19
Shackleton, M.20
Sandhu, S.21
Bowtell, D.22
Johnstone, R.W.23
Fox, S.B.24
McArthur, G.A.25
Papenfuss, A.T.26
Scolyer, R.A.27
Gill, A.J.28
Hicks, R.J.29
Tothill, R.W.30
more..
-
19
-
-
84942856307
-
The distinctive mutational spectra of polyomavirus-negative Merkel cell carcinoma
-
Harms PW, Vats P, Verhaegen ME, Robinson DR, Wu YM, Dhanasekaran SM, Palanisamy N, Siddiqui J, Cao X, Su F, Wang R, Xiao H, Kunju LP, Mehra R, Tomlins SA, Fullen DR, Bichakjian CK, Johnson TM, Dlugosz AA, Chinnaiyan AM. 2015. The distinctive mutational spectra of polyomavirus-negative Merkel cell carcinoma. Cancer Res 75: 3720-3727. http://dx.doi.org/10.1158/0008-5472.CAN-15-0702.
-
(2015)
Cancer Res
, vol.75
, pp. 3720-3727
-
-
Harms, P.W.1
Vats, P.2
Verhaegen, M.E.3
Robinson, D.R.4
Wu, Y.M.5
Dhanasekaran, S.M.6
Palanisamy, N.7
Siddiqui, J.8
Cao, X.9
Su, F.10
Wang, R.11
Xiao, H.12
Kunju, L.P.13
Mehra, R.14
Tomlins, S.A.15
Fullen, D.R.16
Bichakjian, C.K.17
Johnson, T.M.18
Dlugosz, A.A.19
Chinnaiyan, A.M.20
more..
-
20
-
-
84966681514
-
Genomic portfolio of Merkel cell carcinoma as determined by comprehensive genomic profiling: Implications for targeted therapeutics
-
Cohen PR, Tomson BN, Elkin SK, Marchlik E, Carter JL, Kurzrock R. 2016. Genomic portfolio of Merkel cell carcinoma as determined by comprehensive genomic profiling: implications for targeted therapeutics. Oncotarget 7:23454-23467. http://dx.doi.org/10.18632/oncotarget.8032.
-
(2016)
Oncotarget
, vol.7
, pp. 23454-23467
-
-
Cohen, P.R.1
Tomson, B.N.2
Elkin, S.K.3
Marchlik, E.4
Carter, J.L.5
Kurzrock, R.6
-
21
-
-
84891102589
-
Mutational signatures: The patterns of somatic mutations hidden in cancer genomes
-
Alexandrov LB, Stratton MR. 2014. Mutational signatures: the patterns of somatic mutations hidden in cancer genomes. Curr Opin Genet Dev 24:52-60. http://dx.doi.org/10.1016/j.gde.2013.11.014.
-
(2014)
Curr Opin Genet Dev
, vol.24
, pp. 52-60
-
-
Alexandrov, L.B.1
Stratton, M.R.2
-
22
-
-
84928254065
-
Clonal status of actionable driver events and the timing of mutational processes in cancer evolution
-
283ra54
-
McGranahan N, Favero F, de Bruin EC, Birkbak NJ, Szallasi Z, Swanton C. 2015. Clonal status of actionable driver events and the timing of mutational processes in cancer evolution. Sci Transl Med 7:283ra54. http://dx.doi.org/10.1126/scitranslmed.aaa1408.
-
(2015)
Sci Transl Med
, vol.7
-
-
McGranahan, N.1
Favero, F.2
De Bruin, E.C.3
Birkbak, N.J.4
Szallasi, Z.5
Swanton, C.6
-
23
-
-
84906303775
-
Mechanisms underlying mutational signatures in human cancers
-
Helleday T, Eshtad S, Nik-Zainal S. 2014. Mechanisms underlying mutational signatures in human cancers. Nat Rev Genet 15:585-598. http://dx.doi.org/10.1038/nrg3729.
-
(2014)
Nat Rev Genet
, vol.15
, pp. 585-598
-
-
Helleday, T.1
Eshtad, S.2
Nik-Zainal, S.3
-
24
-
-
0019990165
-
UV-induced mutation hotspots occur at DNA damage hotspots
-
Brash DE, Haseltine WA. 1982. UV-induced mutation hotspots occur at DNA damage hotspots. Nature 298:189-192. http://dx.doi.org/10.1038/298189a0.
-
(1982)
Nature
, vol.298
, pp. 189-192
-
-
Brash, D.E.1
Haseltine, W.A.2
-
25
-
-
0020359420
-
The role of DNA polymerase in base substitution mutagenesis on non-instructional templates
-
Strauss B, Rabkin S, Sagher D, Moore P. 1982. The role of DNA polymerase in base substitution mutagenesis on non-instructional templates. Biochimie 64:829-838. http://dx.doi.org/10.1016/S0300-9084(82)80138-7.
-
(1982)
Biochimie
, vol.64
, pp. 829-838
-
-
Strauss, B.1
Rabkin, S.2
Sagher, D.3
Moore, P.4
-
26
-
-
84955592205
-
Mutational strand asymmetries in cancer genomes reveal mechanisms of DNA damage and repair
-
Haradhvala NJ, Polak P, Stojanov P, Covington KR, Shinbrot E, Hess JM, Rheinbay E, Kim J, Maruvka YE, Braunstein LZ, Kamburov A, Hanawalt PC, Wheeler DA, Koren A, Lawrence MS, Getz G. 2016. Mutational strand asymmetries in cancer genomes reveal mechanisms of DNA damage and repair. Cell 164:538-549. http://dx.doi.org/10.1016/j.cell.2015.12.050.
-
(2016)
Cell
, vol.164
, pp. 538-549
-
-
Haradhvala, N.J.1
Polak, P.2
Stojanov, P.3
Covington, K.R.4
Shinbrot, E.5
Hess, J.M.6
Rheinbay, E.7
Kim, J.8
Maruvka, Y.E.9
Braunstein, L.Z.10
Kamburov, A.11
Hanawalt, P.C.12
Wheeler, D.A.13
Koren, A.14
Lawrence, M.S.15
Getz, G.16
-
27
-
-
84890991184
-
Mutational landscape of basal cell carcinomas by whole-exome sequencing
-
Jayaraman SS, Rayhan DJ, Hazany S, Kolodney MS. 2014. Mutational landscape of basal cell carcinomas by whole-exome sequencing. J Invest Dermatol 134:213-220. http://dx.doi.org/10.1038/jid.2013.276.
-
(2014)
J Invest Dermatol
, vol.134
, pp. 213-220
-
-
Jayaraman, S.S.1
Rayhan, D.J.2
Hazany, S.3
Kolodney, M.S.4
-
28
-
-
27144510955
-
Non-melanoma skin cancer: What drives tumor development and progression?
-
Boukamp P. 2005. Non-melanoma skin cancer: what drives tumor development and progression? Carcinogenesis 26:1657-1667. http://dx.doi.org/10.1093/carcin/bgi123.
-
(2005)
Carcinogenesis
, vol.26
, pp. 1657-1667
-
-
Boukamp, P.1
-
29
-
-
42949122558
-
UV damage and DNA repair in malignant melanoma and nonmelanoma skin cancer
-
Rass K, Reichrath J. 2008. UV damage and DNA repair in malignant melanoma and nonmelanoma skin cancer. Adv Exp Med Biol 624: 162-178. http://dx.doi.org/10.1007/978-0-387-77574-6_13.
-
(2008)
Adv Exp Med Biol
, vol.624
, pp. 162-178
-
-
Rass, K.1
Reichrath, J.2
-
30
-
-
84973594792
-
Landscape of somatic mutations in 560 breast cancer whole-genome sequences
-
Nik-Zainal S, Davies H, Staaf J, Ramakrishna M, Glodzik D, Zou X, Martincorena I, Alexandrov LB, Martin S, Wedge DC, Van Loo P, Ju YS, Smid M, Brinkman AB, Morganella S, Aure MR, Lingjærde OC, Langerød A, Ringnér M, Ahn SM, Boyault S, Brock JE, Broeks A, Butler A, Desmedt C, Dirix L, Dronov S, Foekens JA, Gerstung M, Hooijer GKJ, Jang SJ, Jones DR, Kim H-Y, King TA, Krishnamurthy S, Lee HJ, Lee J-Y, Li Y, McLaren S, Menzies A, Mustonen V, O’Meara S, Pauporté I, Pivot X, Purdie CA, Raine K, Ramakrishnan K, Rodríguez-González FG, Romieu G, Sieuwerts AM, Simpson PT, Shepherd R, Stebbings L, Stefansson OA, Teague J, Tommasi S, Treilleux I, Van den Eynden GG, Vermeulen P, Vincent-Salomon A, Yates L, Caldas C, van’t Veer L, Tutt A, Knappskog S, Tan BKT, Jonkers J, Borg Å, Ueno NT, Sotiriou C, Viari A, Futreal PA, Campbell PJ, Span PN, Van Laere S, Lakhani SR, Eyfjord JE, Thompson AM, Birney E, Stunnenberg HG, van de Vijver MJ, Martens JWM, Børresen-Dale A-L, Richardson AL, Kong G, Thomas G, Stratton MR. 2016. Landscape of somatic mutations in 560 breast cancer whole-genome sequences. Nature 534:47-54. http://dx.doi.org/10.1038/nature17676.
-
(2016)
Nature
, vol.534
, pp. 47-54
-
-
Nik-Zainal, S.1
Davies, H.2
Staaf, J.3
Ramakrishna, M.4
Glodzik, D.5
Zou, X.6
Martincorena, I.7
Alexandrov, L.B.8
Martin, S.9
Wedge, D.C.10
Van Loo, P.11
Ju, Y.S.12
Smid, M.13
Brinkman, A.B.14
Morganella, S.15
Aure, M.R.16
Lingjærde, O.C.17
Langerød, A.18
Ringnér, M.19
Ahn, S.M.20
Boyault, S.21
Brock, J.E.22
Broeks, A.23
Butler, A.24
Desmedt, C.25
Dirix, L.26
Dronov, S.27
Foekens, J.A.28
Gerstung, M.29
Hooijer, G.30
Jang, S.J.31
Jones, D.R.32
Kim, H.-Y.33
King, T.A.34
Krishnamurthy, S.35
Lee, H.J.36
Lee, J.-Y.37
Li, Y.38
McLaren, S.39
Menzies, A.40
Mustonen, V.41
O’Meara, S.42
Pauporté, I.43
Pivot, X.44
Purdie, C.A.45
Raine, K.46
Ramakrishnan, K.47
Rodríguez-González, F.G.48
Romieu, G.49
Sieuwerts, A.M.50
Simpson, P.T.51
Shepherd, R.52
Stebbings, L.53
Stefansson, O.A.54
Teague, J.55
Tommasi, S.56
Treilleux, I.57
Van Den Eynden, G.G.58
Vermeulen, P.59
Vincent-Salomon, A.60
Yates, L.61
Caldas, C.62
Van’T Veer, L.63
Tutt, A.64
Knappskog, S.65
Tan, B.66
Jonkers, J.67
Borg, Å.68
Ueno, N.T.69
Sotiriou, C.70
Viari, A.71
Futreal, P.A.72
Campbell, P.J.73
Span, P.N.74
Van Laere, S.75
Lakhani, S.R.76
Eyfjord, J.E.77
Thompson, A.M.78
Birney, E.79
Stunnenberg, H.G.80
Van De Vijver, M.J.81
Martens, J.82
Børresen-Dale, A.-L.83
Richardson, A.L.84
Kong, G.85
Thomas, G.86
Stratton, M.R.87
more..
-
31
-
-
84875228564
-
Distinct gene expression profiles of viral-and nonviral-associated Merkel cell carcinoma revealed by transcriptome analysis
-
Harms PW, Patel RM, Verhaegen ME, Giordano TJ, Nash KT, Johnson CN, Daignault S, Thomas DG, Gudjonsson JE, Elder JT, Dlugosz AA, Johnson TM, Fullen DR, Bichakjian CK. 2013. Distinct gene expression profiles of viral-and nonviral-associated Merkel cell carcinoma revealed by transcriptome analysis. J Invest Dermatol 133:936-945. http://dx.doi.org/10.1038/jid.2012.445.
-
(2013)
J Invest Dermatol
, vol.133
, pp. 936-945
-
-
Harms, P.W.1
Patel, R.M.2
Verhaegen, M.E.3
Giordano, T.J.4
Nash, K.T.5
Johnson, C.N.6
Daignault, S.7
Thomas, D.G.8
Gudjonsson, J.E.9
Elder, J.T.10
Dlugosz, A.A.11
Johnson, T.M.12
Fullen, D.R.13
Bichakjian, C.K.14
-
32
-
-
84890992887
-
The roles of K() channels in cancer
-
Pardo LA, Stühmer W. 2014. The roles of K() channels in cancer. Nat Rev Cancer 14:39-48. http://dx.doi.org/10.1038/nrc3635.
-
(2014)
Nat Rev Cancer
, vol.14
, pp. 39-48
-
-
Pardo, L.A.1
Stühmer, W.2
-
33
-
-
39049158404
-
GABAB receptor is a novel drug target for pancreatic cancer
-
Schuller HM, Al-Wadei HAN, Majidi M. 2008. GABAB receptor is a novel drug target for pancreatic cancer. Cancer 112:767-778. http://dx.doi.org/10.1002/cncr.23231.
-
(2008)
Cancer
, vol.112
, pp. 767-778
-
-
Schuller, H.M.1
Al-Wadei, H.2
Majidi, M.3
-
34
-
-
78049312648
-
GABA-receptor agonist, propofol inhibits invasion of colon carcinoma cells
-
Miao Y, Zhang Y, Wan H, Chen L, Wang F. 2010. GABA-receptor agonist, propofol inhibits invasion of colon carcinoma cells. Biomed Pharmacother 64:583-588. http://dx.doi.org/10.1016/j.biopha.2010.03.006.
-
(2010)
Biomed Pharmacother
, vol.64
, pp. 583-588
-
-
Miao, Y.1
Zhang, Y.2
Wan, H.3
Chen, L.4
Wang, F.5
-
35
-
-
84893711361
-
Genome-wide analysis of HPV integration in human cancers reveals recurrent, focal genomic instability
-
Akagi K, Li J, Broutian TR, Padilla-Nash H, Xiao W, Jiang B, Rocco JW, Teknos TN, Kumar B, Wangsa D, He D, Ried T, Symer DE, Gillison ML. 2014. Genome-wide analysis of HPV integration in human cancers reveals recurrent, focal genomic instability. Genome Res 24:185-199. http://dx.doi.org/10.1101/gr.164806.113.
-
(2014)
Genome Res
, vol.24
, pp. 185-199
-
-
Akagi, K.1
Li, J.2
Broutian, T.R.3
Padilla-Nash, H.4
Xiao, W.5
Jiang, B.6
Rocco, J.W.7
Teknos, T.N.8
Kumar, B.9
Wangsa, D.10
He, D.11
Ried, T.12
Symer, D.E.13
Gillison, M.L.14
-
36
-
-
84964693521
-
SummonChimera infers integrated viral genomes with nucleotide precision from NGS data
-
Katz JP, Pipas JM. 2014. SummonChimera infers integrated viral genomes with nucleotide precision from NGS data. BMC Bioinformatics 15:348. http://dx.doi.org/10.1186/s12859-014-0348-4.
-
(2014)
BMC Bioinformatics
, vol.15
, pp. 348
-
-
Katz, J.P.1
Pipas, J.M.2
-
37
-
-
0142213890
-
Epidemiology of primary Merkel cell carcinoma in the United States
-
Agelli M, Clegg LX. 2003. Epidemiology of primary Merkel cell carcinoma in the United States. J Am Acad Dermatol 49:832-841. http://dx.doi.org/10.1067/S0190.
-
(2003)
J am Acad Dermatol
, vol.49
, pp. 832-841
-
-
Agelli, M.1
Clegg, L.X.2
-
38
-
-
84929129284
-
Exome sequencing of hepatocellular carcinomas identifies new mutational signatures and potential therapeutic targets
-
Schulze K, Imbeaud S, Letouzé E, Alexandrov LB, Calderaro J, Rebouissou S, Couchy G, Meiller C, Shinde J, Soysouvanh F, Calatayud AL, Pinyol R, Pelletier L, Balabaud C, Laurent A, Blanc JF, Mazzaferro V, Calvo F, Villanueva A, Nault JC, Bioulac-Sage P, Stratton MR, Llovet JM, Zucman-Rossi J. 2015. Exome sequencing of hepatocellular carcinomas identifies new mutational signatures and potential therapeutic targets. Nat Genet 47:505-511. http://dx.doi.org/10.1038/ng.3252.
-
(2015)
Nat Genet
, vol.47
, pp. 505-511
-
-
Schulze, K.1
Imbeaud, S.2
Letouzé, E.3
Alexandrov, L.B.4
Calderaro, J.5
Rebouissou, S.6
Couchy, G.7
Meiller, C.8
Shinde, J.9
Soysouvanh, F.10
Calatayud, A.L.11
Pinyol, R.12
Pelletier, L.13
Balabaud, C.14
Laurent, A.15
Blanc, J.F.16
Mazzaferro, V.17
Calvo, F.18
Villanueva, A.19
Nault, J.C.20
Bioulac-Sage, P.21
Stratton, M.R.22
Llovet, J.M.23
Zucman-Rossi, J.24
more..
-
39
-
-
80053435324
-
The role of HPV in head and neck cancer and review of the HPV vaccine
-
D’Souza G, Dempsey A. 2011. The role of HPV in head and neck cancer and review of the HPV vaccine. Prev Med 53(Suppl 1):S5-S11. http://dx.doi.org/10.1016/j.ypmed.2011.08.001.
-
(2011)
Prev Med
, vol.53
, pp. SS5-S11
-
-
D’Souza, G.1
Dempsey, A.2
-
40
-
-
84894231823
-
Landscape of genomic alterations in cervical carcinomas
-
Ojesina AI, Lichtenstein L, Freeman SS, Pedamallu CS, Imaz-Rosshandler I, Pugh TJ, Cherniack AD, Ambrogio L, Cibulskis K, Bertelsen B, Romero-Cordoba S, Treviño V, Vazquez-Santillan K, Guadarrama AS, Wright AA, Rosenberg MW, Duke F, Kaplan B, Wang R, Nickerson E, Walline HM, Lawrence MS, Stewart C, Carter SL, McKenna A, Rodriguez-Sanchez IP, Espinosa-Castilla M, Woie K, Bjorge L, Wik E, Halle MK, Hoivik EA, Krakstad C, Gabiño NB, Gómez-Macías GS, Valdez-Chapa LD, Garza-Rodríguez ML, Maytorena G, Vazquez J, Rodea C. 2014. Landscape of genomic alterations in cervical carcinomas. Nature 506:371-375. http://dx.doi.org/10.1038/nature12881.
-
(2014)
Nature
, vol.506
, pp. 371-375
-
-
Ojesina, A.I.1
Lichtenstein, L.2
Freeman, S.S.3
Pedamallu, C.S.4
Imaz-Rosshandler, I.5
Pugh, T.J.6
Cherniack, A.D.7
Ambrogio, L.8
Cibulskis, K.9
Bertelsen, B.10
Romero-Cordoba, S.11
Treviño, V.12
Vazquez-Santillan, K.13
Guadarrama, A.S.14
Wright, A.A.15
Rosenberg, M.W.16
Duke, F.17
Kaplan, B.18
Wang, R.19
Nickerson, E.20
Walline, H.M.21
Lawrence, M.S.22
Stewart, C.23
Carter, S.L.24
McKenna, A.25
Rodriguez-Sanchez, I.P.26
Espinosa-Castilla, M.27
Woie, K.28
Bjorge, L.29
Wik, E.30
Halle, M.K.31
Hoivik, E.A.32
Krakstad, C.33
Gabiño, N.B.34
Gómez-Macías, G.S.35
Valdez-Chapa, L.D.36
Garza-Rodríguez, M.L.37
Maytorena, G.38
Vazquez, J.39
Rodea, C.40
more..
-
41
-
-
84903390239
-
APOBEC-mediated cytosine deamination links PIK3CA helical domain mutations to human papillomavirus-driven tumor development
-
Henderson S, Chakravarthy A, Su X, Boshoff C, Fenton TR. 2014. APOBEC-mediated cytosine deamination links PIK3CA helical domain mutations to human papillomavirus-driven tumor development. Cell Rep 7:1833-1841. http://dx.doi.org/10.1016/j.celrep.2014.05.012.
-
(2014)
Cell Rep
, vol.7
, pp. 1833-1841
-
-
Henderson, S.1
Chakravarthy, A.2
Su, X.3
Boshoff, C.4
Fenton, T.R.5
-
42
-
-
77956506650
-
Merkel cell polyomavirus and two previously unknown polyomaviruses are chronically shed from human skin
-
Schowalter RM, Pastrana DV, Pumphrey KA, Moyer AL, Buck CB. 2010. Merkel cell polyomavirus and two previously unknown polyomaviruses are chronically shed from human skin. Cell Host Microbe 7:509-515. http://dx.doi.org/10.1016/j.chom.2010.05.006.
-
(2010)
Cell Host Microbe
, vol.7
, pp. 509-515
-
-
Schowalter, R.M.1
Pastrana, D.V.2
Pumphrey, K.A.3
Moyer, A.L.4
Buck, C.B.5
-
43
-
-
84875932668
-
Deep sequencing of the hepatitis B virus in hepatocellular carcinoma patients reveals enriched integration events, structural alterations and sequence variations
-
Toh ST, Jin Y, Liu L, Wang J, Babrzadeh F, Gharizadeh B, Ronaghi M, Toh HC, Chow PKH, Chung AYF, Ooi LL, Lee CGL. 2013. Deep sequencing of the hepatitis B virus in hepatocellular carcinoma patients reveals enriched integration events, structural alterations and sequence variations. Carcinogenesis 34:787-798. http://dx.doi.org/10.1093/carcin/bgs406.
-
(2013)
Carcinogenesis
, vol.34
, pp. 787-798
-
-
Toh, S.T.1
Jin, Y.2
Liu, L.3
Wang, J.4
Babrzadeh, F.5
Gharizadeh, B.6
Ronaghi, M.7
Toh, H.C.8
Chow, P.9
Chung, A.10
Ooi, L.L.11
Lee, C.G.L.12
-
44
-
-
84859553856
-
The effects of hepatitis B virus integration into the genomes of hepatocellular carcinoma patients
-
Jiang Z, Jhunjhunwala S, Liu J, Haverty PM, Kennemer MI, Guan Y, Lee W, Carnevali P, Stinson J, Johnson S, Diao J, Yeung S, Jubb A, Ye W, Wu TD, Kapadia SB, de Sauvage FJ, Gentleman RC, Stern HM, Seshagiri S, Pant KP, Modrusan Z, Ballinger DG, Zhang Z. 2012. The effects of hepatitis B virus integration into the genomes of hepatocellular carcinoma patients. Genome Res 22:593-601. http://dx.doi.org/10.1101/gr.133926.111.
-
(2012)
Genome Res
, vol.22
, pp. 593-601
-
-
Jiang, Z.1
Jhunjhunwala, S.2
Liu, J.3
Haverty, P.M.4
Kennemer, M.I.5
Guan, Y.6
Lee, W.7
Carnevali, P.8
Stinson, J.9
Johnson, S.10
Diao, J.11
Yeung, S.12
Jubb, A.13
Ye, W.14
Wu, T.D.15
Kapadia, S.B.16
De Sauvage, F.J.17
Gentleman, R.C.18
Stern, H.M.19
Seshagiri, S.20
Pant, K.P.21
Modrusan, Z.22
Ballinger, D.G.23
Zhang, Z.24
more..
-
45
-
-
84862999344
-
Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma
-
Sung WK, Zheng H, Li S, Chen R, Liu X, Li Y, Lee NP, Lee WH, Ariyaratne PN, Tennakoon C, Mulawadi FH, Wong KF, Liu AM, Poon RT, Fan ST, Chan KL, Gong Z, Hu Y, Lin Z, Wang G, Zhang Q, Barber TD, Chou WC, Aggarwal A, Hao K, Zhou W, Zhang C, Hardwick J, Buser C, Xu J, Kan Z, Dai H, Mao M, Reinhard C, Wang J, Luk JM. 2012. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet 44:765-769. http://dx.doi.org/10.1038/ng.2295.
-
(2012)
Nat Genet
, vol.44
, pp. 765-769
-
-
Sung, W.K.1
Zheng, H.2
Li, S.3
Chen, R.4
Liu, X.5
Li, Y.6
Lee, N.P.7
Lee, W.H.8
Ariyaratne, P.N.9
Tennakoon, C.10
Mulawadi, F.H.11
Wong, K.F.12
Liu, A.M.13
Poon, R.T.14
Fan, S.T.15
Chan, K.L.16
Gong, Z.17
Hu, Y.18
Lin, Z.19
Wang, G.20
Zhang, Q.21
Barber, T.D.22
Chou, W.C.23
Aggarwal, A.24
Hao, K.25
Zhou, W.26
Zhang, C.27
Hardwick, J.28
Buser, C.29
Xu, J.30
Kan, Z.31
Dai, H.32
Mao, M.33
Reinhard, C.34
Wang, J.35
Luk, J.M.36
more..
-
46
-
-
84857786900
-
Genetic variability and integration of Merkel cell polyomavirus in Merkel cell carcinoma
-
Martel-Jantin C, Filippone C, Cassar O, Peter M, Tomasic G, Vielh P, Brière J, Petrella T, Aubriot-Lorton MH, Mortier L, Jouvion G, SastreGarau X, Robert C, Gessain A. 2012. Genetic variability and integration of Merkel cell polyomavirus in Merkel cell carcinoma. Virology 426: 134-142. http://dx.doi.org/10.1016/j.virol.2012.01.018.
-
(2012)
Virology
, vol.426
, pp. 134-142
-
-
Martel-Jantin, C.1
Filippone, C.2
Cassar, O.3
Peter, M.4
Tomasic, G.5
Vielh, P.6
Brière, J.7
Petrella, T.8
Aubriot-Lorton, M.H.9
Mortier, L.10
Jouvion, G.11
Sastregarau, X.12
Robert, C.13
Gessain, A.14
-
47
-
-
84935856294
-
Merkel cell carcinoma with a suppressor of fused (SUFU) mutation: Case report and potential therapeutic implications
-
Cohen PR, Kurzrock R. 2015. Merkel cell carcinoma with a suppressor of fused (SUFU) mutation: case report and potential therapeutic implications. Dermatol Ther (Heidelb) 5:129-143. http://dx.doi.org/10.1007/s13555-015-0074-5.
-
(2015)
Dermatol Ther (Heidelb)
, vol.5
, pp. 129-143
-
-
Cohen, P.R.1
Kurzrock, R.2
-
48
-
-
0035472223
-
UV-induced DNA damage, repair, mutations and oncogenic pathways in skin cancer
-
De Gruijl FR, Van Kranen HJ, Mullenders LHF. 2001. UV-induced DNA damage, repair, mutations and oncogenic pathways in skin cancer. J Photochem Photobiol B 63:19-27. http://dx.doi.org/10.1016/S1011-1344(01)00199-3.
-
(2001)
J Photochem Photobiol B
, vol.63
, pp. 19-27
-
-
De Gruijl, F.R.1
Van Kranen, H.J.2
Mullenders, L.H.F.3
-
49
-
-
74949138753
-
Human genome sequencing using unchained base reads on selfassembling DNA nanoarrays
-
Drmanac R, Sparks AB, Callow MJ, Halpern AL, Burns NL, Kermani BG, Carnevali P, Nazarenko I, Nilsen GB, Yeung G, Dahl F, Fernandez A, Staker B, Pant KP, Baccash J, Borcherding AP, Brownley A, Cedeno R, Chen L, Chernikoff D, Cheung A, Chirita R, Curson B, Ebert JC, Hacker CR, Hartlage R, Hauser B, Huang S, Jiang Y, Karpinchyk V, Koenig M, Kong C, Landers T, Le C, Liu J, McBride CE, Morenzoni M, Morey RE, Mutch K, Perazich H, Perry K, Peters BA, Peterson J, Pethiyagoda CL, Pothuraju K, Richter C, Rosenbaum AM, Roy S, Shafto J, Sharanhovich U, Shannon KW, Sheppy CG, Sun M, Thakuria JV, Tran A, Vu D, Zaranek AW, Wu X, Drmanac S, Oliphant AR, Banyai WC, Martin B, Ballinger DG, Church GM, Reid CA. 2010. Human genome sequencing using unchained base reads on selfassembling DNA nanoarrays. Science 327:78-81. http://dx.doi.org/10.1126/science.1181498.
-
(2010)
Science
, vol.327
, pp. 78-81
-
-
Drmanac, R.1
Sparks, A.B.2
Callow, M.J.3
Halpern, A.L.4
Burns, N.L.5
Kermani, B.G.6
Carnevali, P.7
Nazarenko, I.8
Nilsen, G.B.9
Yeung, G.10
Dahl, F.11
Fernandez, A.12
Staker, B.13
Pant, K.P.14
Baccash, J.15
Borcherding, A.P.16
Brownley, A.17
Cedeno, R.18
Chen, L.19
Chernikoff, D.20
Cheung, A.21
Chirita, R.22
Curson, B.23
Ebert, J.C.24
Hacker, C.R.25
Hartlage, R.26
Hauser, B.27
Huang, S.28
Jiang, Y.29
Karpinchyk, V.30
Koenig, M.31
Kong, C.32
Landers, T.33
Le, C.34
Liu, J.35
McBride, C.E.36
Morenzoni, M.37
Morey, R.E.38
Mutch, K.39
Perazich, H.40
Perry, K.41
Peters, B.A.42
Peterson, J.43
Pethiyagoda, C.L.44
Pothuraju, K.45
Richter, C.46
Rosenbaum, A.M.47
Roy, S.48
Shafto, J.49
Sharanhovich, U.50
Shannon, K.W.51
Sheppy, C.G.52
Sun, M.53
Thakuria, J.V.54
Tran, A.55
Vu, D.56
Zaranek, A.W.57
Wu, X.58
Drmanac, S.59
Oliphant, A.R.60
Banyai, W.C.61
Martin, B.62
Ballinger, D.G.63
Church, G.M.64
Reid, C.A.65
more..
-
50
-
-
1542515338
-
A census of human cancer genes
-
Futreal PA, Coin L, Marshall M, Down T, Hubbard T, Wooster R, Rahman N, Stratton MR. 2004. A census of human cancer genes. Nat Rev Cancer 4:177-183. http://dx.doi.org/10.1038/nrc1299.
-
(2004)
Nat Rev Cancer
, vol.4
, pp. 177-183
-
-
Futreal, P.A.1
Coin, L.2
Marshall, M.3
Down, T.4
Hubbard, T.5
Wooster, R.6
Rahman, N.7
Stratton, M.R.8
-
51
-
-
84930619194
-
PROVEAN web server: A tool to predict the functional effect of amino acid substitutions and indels
-
Choi Y, Chan AP. 2015. PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels. Bioinformatics 31:2745-2747. http://dx.doi.org/10.1093/bioinformatics/btv195.
-
(2015)
Bioinformatics
, vol.31
, pp. 2745-2747
-
-
Choi, Y.1
Chan, A.P.2
-
52
-
-
84869430931
-
A fast computation of pairwise sequence alignment scores between a protein and a set of single-locus variants of another protein
-
Association for Computing Machinery, New York, NY
-
Choi Y. 2012. A fast computation of pairwise sequence alignment scores between a protein and a set of single-locus variants of another protein, p 414-417. In BCB ‘12: proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine. Association for Computing Machinery, New York, NY.
-
(2012)
BCB ‘12: Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine
, pp. 414-417
-
-
Choi, Y.1
-
53
-
-
84867301515
-
Predicting the functional effect of amino acid substitutions and indels
-
Choi Y, Sims GE, Murphy S, Miller JR, Chan AP. 2012. Predicting the functional effect of amino acid substitutions and indels. PLoS One 7:e46688. http://dx.doi.org/10.1371/journal.pone.0046688.
-
(2012)
Plos One
, vol.7
-
-
Choi, Y.1
Sims, G.E.2
Murphy, S.3
Miller, J.R.4
Chan, A.P.5
-
54
-
-
0043122919
-
SIFT: Predicting amino acid changes that affect protein function
-
Ng PC, Henikoff S. 2003. SIFT: predicting amino acid changes that affect protein function. Nucleic Acids Res 31:3812-3814. http://dx.doi.org/10.1093/nar/gkg509.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3812-3814
-
-
Ng, P.C.1
Henikoff, S.2
-
55
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, Pimentel H, Salzberg SL, Rinn JL, Pachter L. 2012. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc 7:562-578. http://dx.doi.org/10.1038/nprot.2012.016.
-
(2012)
Nat Protoc
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
Pertea, G.4
Kim, D.5
Kelley, D.R.6
Pimentel, H.7
Salzberg, S.L.8
Rinn, J.L.9
Pachter, L.10
-
56
-
-
84924629414
-
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
-
Love MI, Huber W, Anders S. 2014. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol 15:550. http://dx.doi.org/10.1186/s13059-014-0550-8.
-
(2014)
Genome Biol
, vol.15
, pp. 550
-
-
Love, M.I.1
Huber, W.2
Ers, S.3
-
57
-
-
84947743770
-
SomaticSignatures: Inferring mutational signatures from single-nucleotide variants
-
Gehring JS, Fischer B, Lawrence M, Huber W. 2015. SomaticSignatures: inferring mutational signatures from single-nucleotide variants. Bioinformatics 31:3673-3675. http://dx.doi.org/10.1093/bioinformatics/btv408.
-
(2015)
Bioinformatics
, vol.31
, pp. 3673-3675
-
-
Gehring, J.S.1
Fischer, B.2
Lawrence, M.3
Huber, W.4
-
58
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2. Nat Methods 9:357-359. http://dx.doi.org/10.1038/nmeth.1923.
-
(2012)
Nat Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
59
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18:821-829. http://dx.doi.org/10.1101/gr.074492.107.
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
60
-
-
74049108922
-
BLAST : Architecture and applications
-
Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL. 2009. BLAST : architecture and applications. BMC Bioinformatics 10:421. http://dx.doi.org/10.1186/1471-2105-10-421.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 421
-
-
Camacho, C.1
Coulouris, G.2
Avagyan, V.3
Ma, N.4
Papadopoulos, J.5
Bealer, K.6
Madden, T.L.7
-
61
-
-
80455127052
-
Raw sewage harbors diverse viral populations
-
Cantalupo PG, Calgua B, Zhao G, Hundesa A, Wier AD, Katz JP, Grabe M, Hendrix RW, Girones R, Wang D, Pipas JM. 2011. Raw sewage harbors diverse viral populations. mBio 2:e00180-11. http://dx.doi.org/10.1128/mBio.00180-11.
-
(2011)
Mbio
, vol.2
, pp. e00111-e00180
-
-
Cantalupo, P.G.1
Calgua, B.2
Zhao, G.3
Hundesa, A.4
Wier, A.D.5
Katz, J.P.6
Grabe, M.7
Hendrix, R.W.8
Girones, R.9
Wang, D.10
Pipas, J.M.11
|