-
1
-
-
34250777928
-
‘Candidatus Magnetoglobus multicellularis’, a multicellular, magnetotactic prokaryote from a hypersaline environment
-
17551050
-
Abreu F. Martins J. L. Silveira T. S. Keim C. N. De Barros H. G. P. L. Filho F. J. G. et al. (2007). ‘Candidatus Magnetoglobus multicellularis’, a multicellular, magnetotactic prokaryote from a hypersaline environment. Int. J. Syst. Evol. Microbiol. 57, 1318–1322. 10.1099/ijs.0.64857-017551050
-
(2007)
Int. J. Syst. Evol. Microbiol
, vol.57
, pp. 1318-1322
-
-
Abreu, F.1
Martins, J.L.2
Silveira, T.S.3
Keim, C.N.4
De Barros, H.G.P.L.5
Filho, F.J.G.6
-
2
-
-
84884237048
-
Metagenomics of hydrocarbon resource environments indicates aerobic taxa and genes to be unexpectedly common
-
23889694
-
An D. Caffrey S. M. Soh J. Agrawal A. Brown D. Budwill K. et al. (2013). Metagenomics of hydrocarbon resource environments indicates aerobic taxa and genes to be unexpectedly common. Environ. Sci. Techmol. 47, 10708–10717. 10.1021/es402018423889694
-
(2013)
Environ. Sci. Techmol
, vol.47
, pp. 10708-10717
-
-
An, D.1
Caffrey, S.M.2
Soh, J.3
Agrawal, A.4
Brown, D.5
Budwill, K.6
-
3
-
-
84862703105
-
Metagenomic evidence for h(2) oxidation and h(2) production by serpentinite-hosted subsurface microbial communities
-
22232619
-
Brazelton W. J. Nelson B. Schrenk M. O. (2012). Metagenomic evidence for h(2) oxidation and h(2) production by serpentinite-hosted subsurface microbial communities. Front. Microbiol. 2:268. 10.3389/fmicb.2011.0026822232619
-
(2012)
Front. Microbiol
, vol.2
, Issue.268
-
-
Brazelton, W.J.1
Nelson, B.2
Schrenk, M.O.3
-
4
-
-
34548513979
-
Function of periplasmic hydrogenases in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough
-
17601789
-
Caffrey S. M. Park H.-S. Voordouw J. He Z. Zhou J. Voordouw G. (2007). Function of periplasmic hydrogenases in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. J. Bacteriol. 189, 6159–6167. 10.1128/JB.00747-0717601789
-
(2007)
J. Bacteriol
, vol.189
, pp. 6159-6167
-
-
Caffrey, S.M.1
Park, H.-S.2
Voordouw, J.3
He, Z.4
Zhou, J.5
Voordouw, G.6
-
5
-
-
33646827488
-
The versatile epsilon-proteobacteria: key players in sulphidic habitats
-
16652138
-
Campbell B. J. Engel A. S. Porter M. L. Takai K. (2006). The versatile epsilon-proteobacteria: key players in sulphidic habitats. Nat. Rev. Microbiol. 4, 458–468. 10.1038/nrmicro141416652138
-
(2006)
Nat. Rev. Microbiol
, vol.4
, pp. 458-468
-
-
Campbell, B.J.1
Engel, A.S.2
Porter, M.L.3
Takai, K.4
-
6
-
-
72149103279
-
Thiothrix caldifontis sp. nov. and Thiothrix lacustris sp. nov., gammaproteobacteria isolated from sulfide springs
-
19643883, 59, 3135
-
Chernousova E. Gridneva E. Grabovich M. Dubinina G. Akimov V. Rossetti S. et al. (2009). Thiothrix caldifontis sp. nov. and Thiothrix lacustris sp. nov., gammaproteobacteria isolated from sulfide springs. Int. J. Syst. Evol. Microbiol. 59, 3135. 10.1099/ijs.0.009456-019643883
-
(2009)
Int. J. Syst. Evol. Microbiol
-
-
Chernousova, E.1
Gridneva, E.2
Grabovich, M.3
Dubinina, G.4
Akimov, V.5
Rossetti, S.6
-
8
-
-
84893422464
-
Corrosion of iron by sulfate-reducing bacteria: new views of an old problem
-
24317078
-
Enning D. Garrelfs J. (2014). Corrosion of iron by sulfate-reducing bacteria: new views of an old problem. Appl. Environ. Microbiol. 80, 1226–1236. 10.1128/AEM.02848-1324317078
-
(2014)
Appl. Environ. Microbiol
, vol.80
, pp. 1226-1236
-
-
Enning, D.1
Garrelfs, J.2
-
10
-
-
45849140166
-
Microbiological disproportionation of inorganic sulfur compounds
-
Finster K. (2008). Microbiological disproportionation of inorganic sulfur compounds. J. Sulfur Chem. 29, 281–292. 10.1080/17415990802105770
-
(2008)
J. Sulfur Chem
, vol.29
, pp. 281-292
-
-
Finster, K.1
-
11
-
-
0034041256
-
Isolation and characterization of strains CVO and FWKO B: two novel nitrate-reducing, sulfide-oxidizing bacteria isolated from oil field brine
-
10831429
-
Gevertz D. Telang A. J. Voordouw G. Jenneman G. E. (2000). Isolation and characterization of strains CVO and FWKO B: two novel nitrate-reducing, sulfide-oxidizing bacteria isolated from oil field brine. Appl. Environ. Microbiol. 66, 2491–2501. 10.1128/AEM.66.6.2491-2501.200010831429
-
(2000)
Appl. Environ. Microbiol
, vol.66
, pp. 2491-2501
-
-
Gevertz, D.1
Telang, A.J.2
Voordouw, G.3
Jenneman, G.E.4
-
14
-
-
65549160988
-
Annotation of ribosomal RNA genes in metagenomic fragments
-
19346323
-
Huang Y. Gilna P. Li W. (2009). Annotation of ribosomal RNA genes in metagenomic fragments. Bioinformatics 25, 1338–1340. 10.1093/bioinformatics/btp16119346323
-
(2009)
Bioinformatics
, vol.25
, pp. 1338-1340
-
-
Huang, Y.1
Gilna, P.2
Li, W.3
-
15
-
-
84875619226
-
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
-
23329690
-
Katoh K. Standley D. M. (2013). MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol. Biol. Evol. 30, 772–780. 10.1093/molbev/mst01023329690
-
(2013)
Mol. Biol. Evol
, vol.30
, pp. 772-780
-
-
Katoh, K.1
Standley, D.M.2
-
16
-
-
9744249395
-
Sulfuricurvum kujiense gen. nov., sp. nov., a facultatively anaerobic, chemolithoautotrophic, sulphur-oxidizing bacterium isolated from an underground crude-oil storage cavity
-
15545474
-
Kodama Y. Watanabe K. (2004). Sulfuricurvum kujiense gen. nov., sp. nov., a facultatively anaerobic, chemolithoautotrophic, sulphur-oxidizing bacterium isolated from an underground crude-oil storage cavity. Int. J. Syst. Evol. Microbiol. 54, 2297–2300. 10.1099/ijs.0.63243-015545474
-
(2004)
Int. J. Syst. Evol. Microbiol
, vol.54
, pp. 2297-2300
-
-
Kodama, Y.1
Watanabe, K.2
-
17
-
-
79960163933
-
Sulfuritalea hydrogenivorans gen. nov., sp. nov., a facultative autotroph isolated from a freshwater lake
-
20709913
-
Kojima H. Fukui M. (2010). Sulfuritalea hydrogenivorans gen. nov., sp. nov., a facultative autotroph isolated from a freshwater lake. Int. J. Syst. Evol. Microbiol. 61, 1651–1655. 10.1099/ijs.0.024968-020709913
-
(2010)
Int. J. Syst. Evol. Microbiol
, vol.61
, pp. 1651-1655
-
-
Kojima, H.1
Fukui, M.2
-
18
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
22388286
-
Langmead B. Salzberg S. (2012). Fast gapped-read alignment with Bowtie 2. Nat. Methods 9, 357–359. 10.1038/nmeth.192322388286
-
(2012)
Nat. Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.2
-
19
-
-
0032514688
-
2 sensing in Alcaligenes eutrophus
-
9770510
-
2 sensing in Alcaligenes eutrophus. Proc. Natl. Acad. Sci. U.S.A. 95, 12474–12479. 10.1073/pnas.95.21.124749770510
-
(1998)
Proc. Natl. Acad. Sci. U.S.A
, vol.95
, pp. 12474-12479
-
-
Lenz, O.1
Friedrich, B.2
-
20
-
-
84905166119
-
The role of acetogens in microbially influenced corrosion of steel
-
24917861
-
Mand J. Park H. S. Jack T. R. Voordouw G. (2014). The role of acetogens in microbially influenced corrosion of steel. Front. Microbiol. 5:268. 10.3389/fmicb.2014.0026824917861
-
(2014)
Front. Microbiol
, vol.5
, Issue.268
-
-
Mand, J.1
Park, H.S.2
Jack, T.R.3
Voordouw, G.4
-
21
-
-
43849095105
-
The ecology and biotechnology of sulphate-reducing bacteria
-
18461075
-
Muyzer G. Stams A. J. M. (2008). The ecology and biotechnology of sulphate-reducing bacteria. Nat. Rev. Microbiol. 6, 441–454. 10.1038/nrmicro189218461075
-
(2008)
Nat. Rev. Microbiol
, vol.6
, pp. 441-454
-
-
Muyzer, G.1
Stams, A.J.M.2
-
22
-
-
84897108731
-
Comparison of microbial communities involved in souring and corrosion in offshore and onshore oil production facilities in Nigeria
-
24477567
-
Okoro C. Smith S. Chiejina L. Lumacud R. An D. Park H. S. et al. (2014). Comparison of microbial communities involved in souring and corrosion in offshore and onshore oil production facilities in Nigeria. J. Ind. Microbiol. Biotechnol. 41, 665–678. 10.1007/s10295-014-1401-z24477567
-
(2014)
J. Ind. Microbiol. Biotechnol
, vol.41
, pp. 665-678
-
-
Okoro, C.1
Smith, S.2
Chiejina, L.3
Lumacud, R.4
An, D.5
Park, H.S.6
-
23
-
-
84930227248
-
Pipeline failures in corrosive environments - a conceptual analysis of trends and effects
-
Ossai C. I. Boswell B. Davies I. J. (2015). Pipeline failures in corrosive environments - a conceptual analysis of trends and effects. Eng. Fail. Anal. 53, 36–58. 10.1016/j.engfailanal.2015.03.004
-
(2015)
Eng. Fail. Anal
, vol.53
, pp. 36-58
-
-
Ossai, C.I.1
Boswell, B.2
Davies, I.J.3
-
24
-
-
82955221679
-
Effect of sodium bisulfite injection on the microbial community composition in a brackish-water-transporting pipeline
-
21856836
-
Park H. S. Chatterjee I. Dong X. Wang S. H. Sensen C. W. Caffrey S. M. et al. (2011). Effect of sodium bisulfite injection on the microbial community composition in a brackish-water-transporting pipeline. Appl. Environ. Microbiol. 77, 6908–6917. 10.1128/AEM.05891-1121856836
-
(2011)
Appl. Environ. Microbiol
, vol.77
, pp. 6908-6917
-
-
Park, H.S.1
Chatterjee, I.2
Dong, X.3
Wang, S.H.4
Sensen, C.W.5
Caffrey, S.M.6
-
25
-
-
84929366162
-
[FeFe]- and [NiFe]-hydrogenase diversity, mechanism, and maturation
-
25461840
-
Peters J. Schut G. Boyd E. Mulder D. Shepard E. Broderick J. et al. (2015). [FeFe]- and [NiFe]-hydrogenase diversity, mechanism, and maturation. Biochim. Biophys. Acta. 1853, 1350–1369. 10.1016/j.bbamcr.2014.11.02125461840
-
(2015)
Biochim. Biophys. Acta
, vol.1853
, pp. 1350-1369
-
-
Peters, J.1
Schut, G.2
Boyd, E.3
Mulder, D.4
Shepard, E.5
Broderick, J.6
-
26
-
-
77951770756
-
BEDTools: a flexible suite of utilities for comparing genomic features
-
20110278
-
Quinlan A. R. Hall I. M. (2010). BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841–842. 10.1093/bioinformatics/btq03320110278
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
27
-
-
84952629954
-
A post-Genomic view of the ecophysiology, catabolism and biotechnological relevance of sulphate-reducing prokaryotes
-
26210106
-
Rabus R. Venceslau S. S. Wöhlbrand L. Voordouw G. Wall J. D. Pereira I. A. (2015). A post-Genomic view of the ecophysiology, catabolism and biotechnological relevance of sulphate-reducing prokaryotes. Adv. Microb. Physiol. 66, 55–321. 10.1016/bs.ampbs.2015.05.00226210106
-
(2015)
Adv. Microb. Physiol
, vol.66
, pp. 55-321
-
-
Rabus, R.1
Venceslau, S.S.2
Wöhlbrand, L.3
Voordouw, G.4
Wall, J.D.5
Pereira, I.A.6
-
28
-
-
84876865783
-
Methanotrophic bacteria in oilsands tailings ponds of northern Alberta
-
23254511
-
Saidi-Mehrabad A. He Z. Tamas I. Sharp C. E. Brady A. L. Rochman R. F. et al. (2013). Methanotrophic bacteria in oilsands tailings ponds of northern Alberta. ISME J. 7, 908–921. 10.1038/ismej.2012.16323254511
-
(2013)
ISME J
, vol.7
, pp. 908-921
-
-
Saidi-Mehrabad, A.1
He, Z.2
Tamas, I.3
Sharp, C.E.4
Brady, A.L.5
Rochman, R.F.6
-
29
-
-
84883354914
-
Phoenix 2: a locally installable large-scale 16S rRNA gene sequence analysis pipeline with Web interface
-
23871656
-
Soh J. Dong X. Caffrey S. M. Voordouw G. Sensen C. W. (2013). Phoenix 2: a locally installable large-scale 16S rRNA gene sequence analysis pipeline with Web interface. J. Biotechnol. 167, 393–403. 10.1016/j.jbiotec.2013.07.00423871656
-
(2013)
J. Biotechnol
, vol.167
, pp. 393-403
-
-
Soh, J.1
Dong, X.2
Caffrey, S.M.3
Voordouw, G.4
Sensen, C.W.5
-
30
-
-
84899553363
-
RAxML Version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
-
24451623
-
Stamatakis A. (2014). RAxML Version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30, 1312–1313. 10.1093/bioinformatics/btu03324451623
-
(2014)
Bioinformatics
, vol.30
, pp. 1312-1313
-
-
Stamatakis, A.1
-
31
-
-
84884724120
-
Metagenomic analysis of an anaerobic alkane-degrading microbial culture: potential hydrocarbon-activating pathways and inferred roles of community members
-
24237341
-
Tan B. Dong X. Sensen C. W. Foght J. (2013). Metagenomic analysis of an anaerobic alkane-degrading microbial culture: potential hydrocarbon-activating pathways and inferred roles of community members. Genome 56, 599–611. 10.1139/gen-2013-006924237341
-
(2013)
Genome
, vol.56
, pp. 599-611
-
-
Tan, B.1
Dong, X.2
Sensen, C.W.3
Foght, J.4
-
32
-
-
34250582917
-
Sulphur metabolism in Thiohodanceae I. Quantitative measurements in growing cells of Chromatium okenii
-
14218435, —
-
Trüper H. G. Schlegel H. G. (1964). Sulphur metabolism in Thiohodanceae I. Quantitative measurements in growing cells of Chromatium okenii. Antonie van Leeuwenhoek 30, 225—238. 10.1007/BF0204672814218435
-
(1964)
Antonie van Leeuwenhoek
, vol.30
, pp. 225-238
-
-
Trüper, H.G.1
Schlegel, H.G.2
-
33
-
-
77953994723
-
Cultivation and genomic, nutritional, and lipid biomarker characterization of Roseiflexus strains closely related to predominant in situ populations inhabiting Yellowstone hot spring microbial mats
-
20363941
-
van der Meer M. T. Klatt C. G. Wood J. Bryant D. A. Bateson M. M. Lammerts L. et al. (2010). Cultivation and genomic, nutritional, and lipid biomarker characterization of Roseiflexus strains closely related to predominant in situ populations inhabiting Yellowstone hot spring microbial mats. J. Bacteriol. 192, 3033–3042. 10.1128/JB.01610-0920363941
-
(2010)
J. Bacteriol
, vol.192
, pp. 3033-3042
-
-
van der Meer, M.T.1
Klatt, C.G.2
Wood, J.3
Bryant, D.A.4
Bateson, M.M.5
Lammerts, L.6
-
34
-
-
35748974830
-
Occurrence, classification, and biological function of hydrogenases: an overview
-
17927159
-
Vignais P. M. Billoud B. (2007). Occurrence, classification, and biological function of hydrogenases: an overview. Chem. Rev. 107, 4206–4272. 10.1021/cr050196r17927159
-
(2007)
Chem. Rev
, vol.107
, pp. 4206-4272
-
-
Vignais, P.M.1
Billoud, B.2
-
35
-
-
0034886919
-
Classification and phylogeny of hydrogenases
-
11524134
-
Vignais P. M. Billoud B. Meyer J. (2001). Classification and phylogeny of hydrogenases. FEMS Microbiol. Rev. 25, 455–501. 10.1111/j.1574-6976.2001.tb00587.x11524134
-
(2001)
FEMS Microbiol. Rev
, vol.25
, pp. 455-501
-
-
Vignais, P.M.1
Billoud, B.2
Meyer, J.3
-
36
-
-
0001621213
-
De grafiteering van gietijzer als electrobiochemich process inanaerobe Gronden
-
Von Wolzogen Kühr C. A. H. Van der Vlugt L. S. (1934). De grafiteering van gietijzer als electrobiochemich process inanaerobe Gronden. Water 18, 147–165.
-
(1934)
Water
, vol.18
, pp. 147-165
-
-
Von Wolzogen Kühr, C.A.H.1
Van der Vlugt, L.S.2
-
37
-
-
84899676934
-
Effect of sulfate on the transformation of corrosion scale composition and bacterial community in cast iron water distribution pipes
-
24784453
-
Yang F. Shi B. Bai Y. Sun H. Lytle D. A. Wang D. (2014). Effect of sulfate on the transformation of corrosion scale composition and bacterial community in cast iron water distribution pipes. Water Res. 59, 46–57. 10.1016/j.watres.2014.04.00324784453
-
(2014)
Water Res
, vol.59
, pp. 46-57
-
-
Yang, F.1
Shi, B.2
Bai, Y.3
Sun, H.4
Lytle, D.A.5
Wang, D.6
-
38
-
-
0141705429
-
Characterization of microbial communities in gas industry pipelines
-
12957923
-
Zhu X. Y. Lubeck J. Kilbane J. J. II. (2003). Characterization of microbial communities in gas industry pipelines. Appl. Environ. Microbiol. 69, 5354–5363. 10.1128/AEM.69.9.5354-5363.200312957923
-
(2003)
Appl. Environ. Microbiol
, vol.69
, pp. 5354-5363
-
-
Zhu, X.Y.1
Lubeck, J.2
Kilbane, J.J.3
|