Effect of sodium bisulfite injection on the microbial community composition in a brackish-water-transporting pipeline

Applied and Environmental Microbiology

Volumn 77, Issue 19, 2011, Pages 6908-6917

  Park, Hyung Soo ^a   Chatterjee, Indranil ^a   Dong, Xiaoli ^a   Wang, Sheng Hung ^a   Sensen, Christoph W ^a   Caffrey, Sean M ^a   Jack, Thomas R ^a   Boivin, Joe ^b   Voordouw, Gerrit ^a  

^a UNIVERSITY OF CALGARY   (Canada)

^b Cormetrics Limited ^*  (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

16S RRNA GENE; ARCHAEA; BRACKISH WATER; CORROSION FAILURES; IRON CARBONATES; IRON CORROSION; IRON COUPONS; IRON SULFIDE; MICROBIAL COMMUNITIES; MICROBIAL COMMUNITY COMPOSITION; OXYGEN SCAVENGERS; PYROSEQUENCING; SODIUM BISULFITE; STEAM-ASSISTED GRAVITY DRAINAGES; SUBSURFACE WATERS; SULFATE REDUCING; SULFATE REDUCING BACTERIA; WATER SAMPLES;

BACTERIA; CORROSION; GENES; IRON; METHANE; PIPE; PIPELINES; RNA; SCAVENGING; SODIUM; SULFUR; SULFUR COMPOUNDS; WATER INJECTION; X RAY DIFFRACTION ANALYSIS;

RIVERS;

ANTIOXIDANT; ARCHAEAL DNA; ARCHAEAL RNA; BACTERIAL DNA; BACTERIAL RNA; BISULFITE; RIBOSOME DNA; RNA 16S; SULFITE;

BACTERIUM; BITUMEN; BRACKISH WATER; CARBONATE; COMMUNITY COMPOSITION; CORROSION; MICROBIAL COMMUNITY; PIPE; PIPELINE; PLANKTON; SCAVENGER; SODIUM; WATER SUPPLY; X-RAY DIFFRACTION;

ARCHAEBACTERIUM; ARTICLE; BACTERIUM; BIODIVERSITY; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; CORROSION; DNA SEQUENCE; DRUG EFFECT; GENETICS; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY; RNA GENE; SEQUENCE HOMOLOGY;

ANTIOXIDANTS; ARCHAEA; BACTERIA; BIODIVERSITY; CLUSTER ANALYSIS; CORROSION; DNA, ARCHAEAL; DNA, BACTERIAL; DNA, RIBOSOMAL; GENES, RRNA; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, ARCHAEAL; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SULFITES; WATER MICROBIOLOGY;

EID: 82955221679     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.05891-11     Document Type: Article

References (31)

1. Bak, F., and H. Cypionka. 1987. A novel type of energy metabolism involving fermentation of inorganic sulfur compounds. Nature 326:891-892.
2. Bak, F., and N. Pfennig. 1987. Chemolithotrophic growth of Desulfovibrio sulfodismutans sp. nov. by disproportionation of inorganic sulfur compounds. Arch. Microbiol. 147:184-189.
3. Bødtker, G., K. Lysnes, T. Torsvik, EØ. Bjørnestad, and E. Sunde. 2009. Microbial analysis of backflowed injection water from a nitrate-treated North Sea oil reservoir. J. Ind. Microbiol. Biotechnol. 36:439-450.
4. Borg, I., and P. Groenen. 2010. Modern multidimensional scaling: theory and applications. Springer, New York, NY.
5. Cornish Shartau, S. L., et al. 2010. Ammonium concentrations in produced waters from a mesothermic oil field subjected to nitrate injection decrease through formation of denitrifying biomass and anammox activity. Appl. Environ. Microbiol. 76:4977-4987.
6. Crolet, J.-L. 2005. Microbial corrosion in the oil industry: a corrosionist's view, p. 143-169. In B. Ollivier and M. Magot (ed.), Petroleum microbiology. ASM Press, Washington, DC.
7. 2 with elemental iron as the sole source of electrons. Science 237:509-511.
8. DeSantis, T. Z., et al. 2006. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl. Environ. Microbiol. 72:5069-5072.
9. Dinh, H. T., et al. 2004. Iron corrosion by novel anaerobic microorganisms. Nature 427:829-832.
10. Duncan, K. E., et al. 2009. Biocorrosive thermophilic microbial communities in Alaskan North Slope oil facilities. Environ. Sci. Technol. 43:7977-7984.
11. Finster, K., W. Liesack, and B. Thamdrup. 1998. Elemental sulfur and thiosulfate disproportionation by Desulfocapsa sulfoexigens sp. nov., a new anaerobic bacterium isolated from marine surface sediment. Appl. Environ. Microbiol. 64:119-125.
12. Gieg, L. M., I. A. Davidova, K. E. Duncan, and J. M. Suflita. 2010. Methanogenesis, sulfate reduction and crude oil biodegradation in hot Alaskan oilfields. Environ. Microbiol. 12:3074-3086.
13. Huse, S., J. Huber, H. Morrison, M. Sogin, and D. Welch. 2007. Accuracy and quality of massively parallel DNA pyrosequencing. Genome Biol. 8:R143.
14. Huson, D., et al. 2007. Dendroscope: an interactive viewer for large phylogenetic trees. BMC Bioinformatics 8:460.
15. Jan-Roblero, J., J. M. Romero, M. Amaya, and S. Le Borgne. 2004. Phylogenetic characterization of a corrosive consortium isolated from a sour gas pipeline. Appl. Microbiol. Biotechnol. 64:862-867.
16. Janssen, P. H., A. Shuhmann, F. Bak, and W. Liesack. 1996. Disproportionation of inorganic sulfur compounds by the sulfate-reducing bacterium Desulfocapsa thiozymogenes gen. nov. sp. nov. Arch. Microbiol. 166:184-192.
17. Kaster, K. M., K. Bonaunet, H. Berland, G. Kjeilen-Eilertsen, and O. G. Brakstad. 2009. Characterization of culture-independent and -dependent microbial communities in a high-temperature offshore chalk petroleum reservoir. Antonie Van Leeuwenhoek 96:423-439.
18. López, M. A., F. J. Zavala-Díaz de la Serna, J. Jan-Roblero, J. M. Romero, and C. Hernández-Rodríguez. 2006. Phylogenetic analysis of a biofilm bacterial population in a water pipeline in the Gulf of Mexico. FEMS Microbiol. Ecol. 58:145-154.
19. Marmur, J. 1961. A procedure for the isolation of deoxyribonucleic acid from microorganisms. J. Mol. Biol. 3:208-218.
20. Neria-González, I., E. T. Wang, F. Ramirez, J. M. Romero, and C. Hernandez-Rodriguez. 2006. Characterization of bacterial community associated to biofilms of corroded oil pipelines from the southeast of Mexico. Anaerobe 12:122-133.
21. Pham, V. D., et al. 2009. Characterizing microbial diversity in production water from an Alaskan mesothermic petroleum reservoir with two independent molecular methods. Environ. Microbiol. 11:176-187.
22. Pruesse, E., et al. 2007. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 35:7188-7196.
23. Schloss, P. D., et al. 2009. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75:7537-7541.
24. Schloss, P. D., and S. L. Westcott. 2011. Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis. Appl. Environ. Microbiol. 77:3219-3226. doi:10.1128/ AEM.02810-10.
25. Schwermer, C. U., et al. 2008. Impact of nitrate on the structure and function of bacterial biofilm communities in pipelines used for injection of seawater into oil fields. Appl. Environ. Microbiol. 74:2841-2851.
26. Stevenson, B. S., et al. 2011. Microbial communities in bulk fluids and biofilms of an oil facility have similar composition but different structure. Environ. Microbiol. 13:1078-1090.
27. Uchiyama, T., K. Ito, K. Mori, H. Tsurumaru, and S. Harayama. 2010. Iron-corroding methanogen isolated from a crude-oil storage tank. Appl. Environ. Microbiol. 76:1783-1788.
28. van der Kraan, G. M., J. Bruining, B. P. Lomans, M. C. van Loosdrecht, and G. Muyzer. 2010. Microbial diversity of an oil-water processing site and its associated oil field: the possible role of microorganisms as information carriers from oil-associated environments. FEMS Microbiol. Ecol. 71:428-443.
29. Wang, Q., G. M. Garrity, J. M. Tiedje, and J. R. Cole. 2007. Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73:5261-5267.
30. Yue, J. C., and M. K. Clayton. 2005. A similarity measure based on species proportions. Commun. Stat. Theor. Methods 34:2123-2131.
31. Zhu, X. Y., J. Lubeck, and J. J. Kilbane II. 2003. Characterization of microbial communities in gas industry pipelines. Appl. Environ. Microbiol. 69: 5354-5363.