메뉴 건너뛰기




Volumn 19, Issue 2, 2017, Pages 192-203

Reassessment of Mendelian gene pathogenicity using 7,855 cardiomyopathy cases and 60,706 reference samples

(15)  Walsh, Roddy a,b   Thomson, Kate L c,d   Ware, James S a,b,e   Funke, Birgit H f,g   Woodley, Jessica c   McGuire, Karen J c   Mazzarotto, Francesco a,b   Blair, Edward c   Seller, Anneke c   Taylor, Jenny C h,i   Minikel, Eric V g,l   MacArthur, Daniel G g,j,k   Farrall, Martin d,i   Cook, Stuart A b,e,m,n   Watkins, Hugh d,i  


Author keywords

Clinical genetics; Exome Aggregation Consortium; Inherited cardiomyopathy; Mendelian genetics; Variation interpretation

Indexed keywords

ALPHA ACTININ 2; ALPHA TROPOMYOSIN; LAMININ ALPHA4; LYSOSOME ASSOCIATED MEMBRANE PROTEIN 2; RYANODINE RECEPTOR 2; SODIUM CHANNEL NAV1.5;

EID: 85011933920     PISSN: 10983600     EISSN: 15300366     Source Type: Journal    
DOI: 10.1038/gim.2016.90     Document Type: Article
Times cited : (524)

References (40)
  • 1
    • 84930351608 scopus 로고    scopus 로고
    • Solving the molecular diagnostic testing conundrum for Mendelian disorders in the era of next-generation sequencing: Single-gene, gene panel, or exome/genome sequencing
    • Xue Y, Ankala A, Wilcox WR, Hegde MR. Solving the molecular diagnostic testing conundrum for Mendelian disorders in the era of next-generation sequencing: single-gene, gene panel, or exome/genome sequencing. Genet Med 2015;17:444-451.
    • (2015) Genet Med , vol.17 , pp. 444-451
    • Xue, Y.1    Ankala, A.2    Wilcox, W.R.3    Hegde, M.R.4
  • 2
    • 84937977490 scopus 로고    scopus 로고
    • Clinical utility of a next generation sequencing panel assay for Marfan and Marfan-like syndromes featuring aortopathy
    • Wooderchak-Donahue W, VanSant-Webb C, Tvrdik T, et al. Clinical utility of a next generation sequencing panel assay for Marfan and Marfan-like syndromes featuring aortopathy. Am J Med Genet Part A 2015;167:1747-1757.
    • (2015) Am J Med Genet Part A , vol.167 , pp. 1747-1757
    • Wooderchak-Donahue, W.1    VanSant-Webb, C.2    Tvrdik, T.3
  • 3
    • 84901449140 scopus 로고    scopus 로고
    • The landscape of genetic variation in dilated cardiomyopathy as surveyed by clinical DNA sequencing
    • Pugh TJ, Kelly MA, Gowrisankar S, et al. The landscape of genetic variation in dilated cardiomyopathy as surveyed by clinical DNA sequencing. Genet Med 2014;16:601-608.
    • (2014) Genet Med , vol.16 , pp. 601-608
    • Pugh, T.J.1    Kelly, M.A.2    Gowrisankar, S.3
  • 4
    • 84975795680 scopus 로고    scopus 로고
    • An integrated map of genetic variation from 1, 092 human genomes
    • An integrated map of genetic variation from 1, 092 human genomes. Nature 2012;491:56-65.
    • (2012) Nature , vol.491 , pp. 56-65
  • 5
    • 84982253941 scopus 로고    scopus 로고
    • Analysis of protein-coding genetic variation in 60, 706 humans
    • e-pub ahead of print 17 August, 2016
    • Exome Aggregation Consortium; Lek M, Karczewski K, Minikel E, et al. Analysis of protein-coding genetic variation in 60, 706 humans. Nature, e-pub ahead of print 17 August, 2016. http://biorxiv.org/content/early/2015/10/30/030338.
    • Nature
    • Lek, M.1    Karczewski, K.2    Minikel, E.3
  • 6
    • 45449101500 scopus 로고    scopus 로고
    • Natural selection on genes that underlie human disease susceptibility
    • Blekhman R, Man O, Herrmann L, et al. Natural selection on genes that underlie human disease susceptibility. Curr Biol 2008;18:883-889.
    • (2008) Curr Biol , vol.18 , pp. 883-889
    • Blekhman, R.1    Man, O.2    Herrmann, L.3
  • 8
    • 84880535720 scopus 로고    scopus 로고
    • ACMG recommendations for reporting of incidental findings in clinical exome and genome sequencing
    • Green RC, Berg JS, Grody WW, et al.; American College of Medical Genetics and Genomics. ACMG recommendations for reporting of incidental findings in clinical exome and genome sequencing. Genet Med 2013;15:565-574.
    • (2013) Genet Med , vol.15 , pp. 565-574
    • Green, R.C.1    Berg, J.S.2    Grody, W.W.3
  • 9
    • 84946506206 scopus 로고    scopus 로고
    • Results of clinical genetic testing of 2, 912 probands with hypertrophic cardiomyopathy: Expanded panels offer limited additional sensitivity
    • Alfares AA, Kelly MA, McDermott G, et al. Results of clinical genetic testing of 2, 912 probands with hypertrophic cardiomyopathy: expanded panels offer limited additional sensitivity. Genet Med. 2015;17:880-888.
    • (2015) Genet Med. , vol.17 , pp. 880-888
    • Alfares, A.A.1    Kelly, M.A.2    McDermott, G.3
  • 10
    • 0015154543 scopus 로고
    • Attributable risk percent in case-control studies
    • Cole P, MacMahon B. Attributable risk percent in case-control studies. Br J Prev Soc Med 1971;25:242-244.
    • (1971) Br J Prev Soc Med , vol.25 , pp. 242-244
    • Cole, P.1    MacMahon, B.2
  • 11
    • 0024322853 scopus 로고
    • Estimability and estimation of excess and etiologic fractions
    • Robins JM, Greenland S. Estimability and estimation of excess and etiologic fractions. Stat Med 1989;8:845-859.
    • (1989) Stat Med , vol.8 , pp. 845-859
    • Robins, J.M.1    Greenland, S.2
  • 12
    • 0024229198 scopus 로고
    • Conceptual problems in the definition and interpretation of attributable fractions
    • Greenland S, Robins JM. Conceptual problems in the definition and interpretation of attributable fractions. Am J Epidemiol 1988;128:1185-1197.
    • (1988) Am J Epidemiol , vol.128 , pp. 1185-1197
    • Greenland, S.1    Robins, J.M.2
  • 13
    • 76949086002 scopus 로고    scopus 로고
    • Statistical method on nonrandom clustering with application to somatic mutations in cancer
    • Ye J, Pavlicek A, Lunney EA, Rejto PA, Teng CH. Statistical method on nonrandom clustering with application to somatic mutations in cancer. BMC Bioinformatics 2010;11:11.
    • (2010) BMC Bioinformatics , vol.11 , pp. 11
    • Ye, J.1    Pavlicek, A.2    Lunney, E.A.3    Rejto, P.A.4    Teng, C.H.5
  • 14
    • 84921912496 scopus 로고    scopus 로고
    • Novel genotype-phenotype associations demonstrated by high-throughput sequencing in patients with hypertrophic cardiomyopathy
    • Lopes LR, Syrris P, Guttmann O P, et al. Novel genotype-phenotype associations demonstrated by high-throughput sequencing in patients with hypertrophic cardiomyopathy. Heart 2015;101:294-301.
    • (2015) Heart , vol.101 , pp. 294-301
    • Lopes, L.R.1    Syrris, P.2    Guttmann, O.P.3
  • 15
    • 77953023261 scopus 로고    scopus 로고
    • Coding sequence rare variants identified in MYBPC3, MYH6, TPM1, TNNC1, and TNNI3 from 312 patients with familial or idiopathic dilated cardiomyopathy
    • Hershberger RE, Norton N, Morales A, Li D, Siegfried JD, Gonzalez-Quintana J. Coding sequence rare variants identified in MYBPC3, MYH6, TPM1, TNNC1, and TNNI3 from 312 patients with familial or idiopathic dilated cardiomyopathy. Circ Cardiovasc Genet 2010;3:155-161.
    • (2010) Circ Cardiovasc Genet , vol.3 , pp. 155-161
    • Hershberger, R.E.1    Norton, N.2    Morales, A.3    Li, D.4    Siegfried, J.D.5    Gonzalez-Quintana, J.6
  • 16
    • 45649083874 scopus 로고    scopus 로고
    • Lamin A/C mutation analysis in a cohort of 324 unrelated patients with idiopathic or familial dilated cardiomyopathy
    • Parks SB, Kushner JD, Nauman D, et al. Lamin A/C mutation analysis in a cohort of 324 unrelated patients with idiopathic or familial dilated cardiomyopathy. Am Heart J 2008;156:161-169.
    • (2008) Am Heart J , vol.156 , pp. 161-169
    • Parks, S.B.1    Kushner, J.D.2    Nauman, D.3
  • 17
    • 55149117580 scopus 로고    scopus 로고
    • Coding sequence mutations identified in MYH7, TNNT2, SCN5A, CSRP3, LBD3, and TCAP from 313 patients with familial or idiopathic dilated cardiomyopathy
    • Hershberger RE, Parks SB, Kushner JD, et al. Coding sequence mutations identified in MYH7, TNNT2, SCN5A, CSRP3, LBD3, and TCAP from 313 patients with familial or idiopathic dilated cardiomyopathy. Clin Transl Sci 2008;1:21-26.
    • (2008) Clin Transl Sci , vol.1 , pp. 21-26
    • Hershberger, R.E.1    Parks, S.B.2    Kushner, J.D.3
  • 19
    • 84919666867 scopus 로고    scopus 로고
    • 2014 ESC Guidelines on diagnosis and management of hypertrophic cardiomyopathy: The Task Force for the Diagnosis and Management of Hypertrophic Cardiomyopathy of the European Society of Cardiology (ESC)
    • Elliott PM, Anastasakis a., Borger M a., et al. 2014 ESC Guidelines on diagnosis and management of hypertrophic cardiomyopathy: The Task Force for the Diagnosis and Management of Hypertrophic Cardiomyopathy of the European Society of Cardiology (ESC). Eur Heart J 2014;35:2733-2779.
    • (2014) Eur Heart J , vol.35 , pp. 2733-2779
    • Elliott, P.M.1    Anastasakis, A.2    Borger, M.3
  • 20
    • 79960867817 scopus 로고    scopus 로고
    • HRS/EHRA expert consensus statement on the state of genetic testing for the channelopathies and cardiomyopathies: This document was developed as a partnership between the Heart Rhythm Society (HRS) and the European Heart Rhythm Association (EHRA)
    • Ackerman MJ, Priori SG, Willems S, et al. HRS/EHRA expert consensus statement on the state of genetic testing for the channelopathies and cardiomyopathies: this document was developed as a partnership between the Heart Rhythm Society (HRS) and the European Heart Rhythm Association (EHRA). Hear Rhythm 2011;8:1308-1339.
    • (2011) Hear Rhythm , vol.8 , pp. 1308-1339
    • Ackerman, M.J.1    Priori, S.G.2    Willems, S.3
  • 21
    • 0035378612 scopus 로고    scopus 로고
    • First mutation in cardiac troponin C, L29Q, in a patient with hypertrophic cardiomyopathy
    • Hoffmann B, Schmidt-Traub H, Perrot A, Osterziel KJ, Gessner R. First mutation in cardiac troponin C, L29Q, in a patient with hypertrophic cardiomyopathy. Hum Mutat 2001;17:524.
    • (2001) Hum Mutat , vol.17 , pp. 524
    • Hoffmann, B.1    Schmidt-Traub, H.2    Perrot, A.3    Osterziel, K.J.4    Gessner, R.5
  • 22
    • 34147182155 scopus 로고    scopus 로고
    • Myozenin 2 is a novel gene for human hypertrophic cardiomyopathy
    • Osio A, Tan L, Chen SN, et al. Myozenin 2 is a novel gene for human hypertrophic cardiomyopathy. Circ Res 2007;100:766-768.
    • (2007) Circ Res , vol.100 , pp. 766-768
    • Osio, A.1    Tan, L.2    Chen, S.N.3
  • 23
    • 77649218547 scopus 로고    scopus 로고
    • Mutations in alpha-actinin-2 cause hypertrophic cardiomyopathy: A genome-wide analysis
    • Chiu C, Bagnall RD, Ingles J, et al. Mutations in alpha-actinin-2 cause hypertrophic cardiomyopathy: a genome-wide analysis. J Am Coll Cardiol 2010;55:1127-1135.
    • (2010) J Am Coll Cardiol , vol.55 , pp. 1127-1135
    • Chiu, C.1    Bagnall, R.D.2    Ingles, J.3
  • 24
    • 67650091283 scopus 로고    scopus 로고
    • Cardiac ankyrin repeat protein gene (ANKRD1) mutations in hypertrophic cardiomyopathy
    • Arimura T, Bos JM, Sato A, et al. Cardiac ankyrin repeat protein gene (ANKRD1) mutations in hypertrophic cardiomyopathy. J Am Coll Cardiol 2009;54:334-342.
    • (2009) J Am Coll Cardiol , vol.54 , pp. 334-342
    • Arimura, T.1    Bos, J.M.2    Sato, A.3
  • 25
    • 79953842000 scopus 로고    scopus 로고
    • Update 2011: Clinical and genetic issues in familial dilated cardiomyopathy
    • Hershberger RE, Siegfried JD. Update 2011: clinical and genetic issues in familial dilated cardiomyopathy. J Am Coll Cardiol 2011;57:1641-1649.
    • (2011) J Am Coll Cardiol , vol.57 , pp. 1641-1649
    • Hershberger, R.E.1    Siegfried, J.D.2
  • 26
    • 84873855851 scopus 로고    scopus 로고
    • Genetic mutations and mechanisms in dilated cardiomyopathy
    • McNally EM, Golbus JR, Puckelwartz MJ. Genetic mutations and mechanisms in dilated cardiomyopathy. J Clin Invest 2013;123:19-26.
    • (2013) J Clin Invest , vol.123 , pp. 19-26
    • McNally, E.M.1    Golbus, J.R.2    Puckelwartz, M.J.3
  • 27
    • 84863116641 scopus 로고    scopus 로고
    • Truncations of titin causing dilated cardiomyopathy
    • Herman DS, Lam L, Taylor MR, et al. Truncations of titin causing dilated cardiomyopathy. N Engl J Med 2012;366:619-628.
    • (2012) N Engl J Med , vol.366 , pp. 619-628
    • Herman, D.S.1    Lam, L.2    Taylor, M.R.3
  • 28
    • 84988449067 scopus 로고    scopus 로고
    • Integrated allelic, transcriptional, and phenomic dissection of the cardiac effects of titin truncations in health and disease
    • Roberts AM, Ware JS, Herman DS, et al. Integrated allelic, transcriptional, and phenomic dissection of the cardiac effects of titin truncations in health and disease. Sci Transl Med 2015;7:270ra6.
    • (2015) Sci Transl Med , vol.7 , pp. 270ra6
    • Roberts, A.M.1    Ware, J.S.2    Herman, D.S.3
  • 30
    • 84929617783 scopus 로고    scopus 로고
    • Atlas of the clinical genetics of human dilated cardiomyopathy
    • 135a
    • Haas J, Frese KS, Peil B, et al. Atlas of the clinical genetics of human dilated cardiomyopathy. Eur Heart J 2015;36:1123-135a.
    • (2015) Eur Heart J , vol.36 , pp. 1123
    • Haas, J.1    Frese, K.S.2    Peil, B.3
  • 31
    • 84949257272 scopus 로고    scopus 로고
    • Proteins linked to autosomal dominant and autosomal recessive disorders harbor characteristic rare missense mutation distribution patterns
    • Turner TN, Douville C, Kim D, et al. Proteins linked to autosomal dominant and autosomal recessive disorders harbor characteristic rare missense mutation distribution patterns. Hum Mol Genet 2015;24:5995-6002.
    • (2015) Hum Mol Genet , vol.24 , pp. 5995-6002
    • Turner, T.N.1    Douville, C.2    Kim, D.3
  • 33
    • 0037174918 scopus 로고    scopus 로고
    • Alterations in thin filament regulation induced by a human cardiac troponin T mutant that causes dilated cardiomyopathy are distinct from those induced by troponin T mutants that cause hypertrophic cardiomyopathy
    • Robinson P, Mirza M, Knott A, et al. Alterations in thin filament regulation induced by a human cardiac troponin T mutant that causes dilated cardiomyopathy are distinct from those induced by troponin T mutants that cause hypertrophic cardiomyopathy. J Biol Chem 2002;277:40710-40716.
    • (2002) J Biol Chem , vol.277 , pp. 40710-40716
    • Robinson, P.1    Mirza, M.2    Knott, A.3
  • 34
    • 0037630018 scopus 로고    scopus 로고
    • Hypertrophic cardiomyopathy: Distribution of disease genes, spectrum of mutations, and implications for a molecular diagnosis strategy
    • Richard P, Charron P, Carrier L, et al. Hypertrophic cardiomyopathy: distribution of disease genes, spectrum of mutations, and implications for a molecular diagnosis strategy. Circulation 2003;107:2227-2232.
    • (2003) Circulation , vol.107 , pp. 2227-2232
    • Richard, P.1    Charron, P.2    Carrier, L.3
  • 35
    • 84886262225 scopus 로고    scopus 로고
    • Clinical predictors of genetic testing outcomes in hypertrophic cardiomyopathy
    • Ingles J, Sarina T, Yeates L, et al. Clinical predictors of genetic testing outcomes in hypertrophic cardiomyopathy. Genet Med. 2013;15:972-977.
    • (2013) Genet Med. , vol.15 , pp. 972-977
    • Ingles, J.1    Sarina, T.2    Yeates, L.3
  • 36
    • 75249083039 scopus 로고    scopus 로고
    • Compound and digenic heterozygosity contributes to arrhythmogenic right ventricular cardiomyopathy
    • Xu T, Yang Z, Vatta M, et al.; Multidisciplinary Study of Right Ventricular Dysplasia Investigators. Compound and digenic heterozygosity contributes to arrhythmogenic right ventricular cardiomyopathy. J Am Coll Cardiol 2010;55:587-597.
    • (2010) J Am Coll Cardiol , vol.55 , pp. 587-597
    • Xu, T.1    Yang, Z.2    Vatta, M.3
  • 37
    • 84925353263 scopus 로고    scopus 로고
    • New perspectives on the prevalence of hypertrophic cardiomyopathy
    • Semsarian C, Ingles J, Maron MS, Maron BJ. New perspectives on the prevalence of hypertrophic cardiomyopathy. J Am Coll Cardiol 2015;65:1249-1254.
    • (2015) J Am Coll Cardiol , vol.65 , pp. 1249-1254
    • Semsarian, C.1    Ingles, J.2    Maron, M.S.3    Maron, B.J.4
  • 38
    • 84922955673 scopus 로고    scopus 로고
    • Targeted analysis of whole genome sequence data to diagnose genetic cardiomyopathy
    • Golbus JR, Puckelwartz MJ, Dellefave-Castillo L, et al. Targeted analysis of whole genome sequence data to diagnose genetic cardiomyopathy. Circ Cardiovasc Genet 2014;7:751-759.
    • (2014) Circ Cardiovasc Genet , vol.7 , pp. 751-759
    • Golbus, J.R.1    Puckelwartz, M.J.2    Dellefave-Castillo, L.3
  • 39
    • 84882453618 scopus 로고    scopus 로고
    • New population-based exome data are questioning the pathogenicity of previously cardiomyopathy-associated genetic variants
    • Andreasen C, Nielsen JB, Refsgaard L, et al. New population-based exome data are questioning the pathogenicity of previously cardiomyopathy-associated genetic variants. Eur J Hum Genet 2013;21:918-928.
    • (2013) Eur J Hum Genet , vol.21 , pp. 918-928
    • Andreasen, C.1    Nielsen, J.B.2    Refsgaard, L.3
  • 40
    • 84883461171 scopus 로고    scopus 로고
    • Common variants at SCN5A-SCN10A and HEY2 are associated with Brugada syndrome, a rare disease with high risk of sudden cardiac death
    • Bezzina CR, Barc J, Mizusawa Y, et al. Common variants at SCN5A-SCN10A and HEY2 are associated with Brugada syndrome, a rare disease with high risk of sudden cardiac death. Nat Genet 2013;45:1044-1049.
    • (2013) Nat Genet , vol.45 , pp. 1044-1049
    • Bezzina, C.R.1    Barc, J.2    Mizusawa, Y.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.