-
1
-
-
80455144479
-
Pioneer transcription factors: establishing competence for gene expression
-
2056668,.;: –
-
Zaret KS, Carroll JS, Pioneer transcription factors: establishing competence for gene expression. Genes Dev. 2011;25: 2227–2241. doi: 10.1101/gad.176826.11122056668
-
(2011)
Genes Dev
, vol.25
, pp. 2227-2241
-
-
Zaret, K.S.1
Carroll, J.S.2
-
2
-
-
84893777171
-
Overlapping chromatin-remodeling systems collaborate genome wide at dynamic chromatin transitions
-
4317492,..;: –
-
Morris SA, Baek S, Sung M-H, John S, Wiench M, Johnson TA, et al. Overlapping chromatin-remodeling systems collaborate genome wide at dynamic chromatin transitions. Nat Struct Mol Biol. 2013;21: 73–81. doi: 10.1038/nsmb.271824317492
-
(2013)
Nat Struct Mol Biol
, vol.21
, pp. 73-81
-
-
Morris, S.A.1
Baek, S.2
Sung, M.-H.3
John, S.4
Wiench, M.5
Johnson, T.A.6
-
3
-
-
84918527386
-
Pioneer transcription factors in cell reprogramming
-
5512556,.. pp. –
-
Iwafuchi-Doi M, Zaret KS, Pioneer transcription factors in cell reprogramming. Genes and Development. 2014. pp. 2679–2692. doi: 10.1101/gad.253443.11425512556
-
(2014)
Genes and Development
, pp. 2679-2692
-
-
Iwafuchi-Doi, M.1
Zaret, K.S.2
-
4
-
-
85011351989
-
Pioneer Transcription Factors Target Partial DNA Motifs on Nucleosomes to Initiate Reprogramming
-
Soufi A, Garcia MF, Jaroszewicz A, Osman N, Pellegrini M, Zaret KS, Pioneer Transcription Factors Target Partial DNA Motifs on Nucleosomes to Initiate Reprogramming. Cell. 2014.
-
(2014)
Cell
-
-
Soufi, A.1
Garcia, M.F.2
Jaroszewicz, A.3
Osman, N.4
Pellegrini, M.5
Zaret, K.S.6
-
5
-
-
0036184236
-
Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4
-
1864602,.;: –
-
Cirillo LA, Lin FR, Cuesta I, Friedman D, Jarnik M, Zaret KS, Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4. Mol Cell. 2002;9: 279–289. 11864602
-
(2002)
Mol Cell
, vol.9
, pp. 279-289
-
-
Cirillo, L.A.1
Lin, F.R.2
Cuesta, I.3
Friedman, D.4
Jarnik, M.5
Zaret, K.S.6
-
6
-
-
77649162059
-
Direct conversion of fibroblasts to functional neurons by defined factors
-
0107439,.;: –
-
Vierbuchen T, Ostermeier A, Pang ZP, Kokubu Y, Südhof TC, Wernig M, Direct conversion of fibroblasts to functional neurons by defined factors. Nature. 2010;463: 1035–1041. doi: 10.1038/nature0879720107439
-
(2010)
Nature
, vol.463
, pp. 1035-1041
-
-
Vierbuchen, T.1
Ostermeier, A.2
Pang, Z.P.3
Kokubu, Y.4
Südhof, T.C.5
Wernig, M.6
-
7
-
-
43149115856
-
PU.1 and C/EBPalpha/beta convert fibroblasts into macrophage-like cells
-
8424555,..;: –
-
Feng R, Desbordes SC, Xie H, Tillo ES, Pixley F, Stanley ER, et al. PU.1 and C/EBPalpha/beta convert fibroblasts into macrophage-like cells. Proc Natl Acad Sci U S A. 2008;105: 6057–6062. doi: 10.1073/pnas.071196110518424555
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 6057-6062
-
-
Feng, R.1
Desbordes, S.C.2
Xie, H.3
Tillo, E.S.4
Pixley, F.5
Stanley, E.R.6
-
8
-
-
84891677378
-
CLOCK:BMAL1 is a pioneer-like transcription factor
-
4395244,.;: –
-
Menet JS, Pescatore S, Rosbash M, CLOCK:BMAL1 is a pioneer-like transcription factor. Genes Dev. 2014;28: 8–13. doi: 10.1101/gad.228536.11324395244
-
(2014)
Genes Dev
, vol.28
, pp. 8-13
-
-
Menet, J.S.1
Pescatore, S.2
Rosbash, M.3
-
9
-
-
84922374664
-
TP53 engagement with the genome occurs in distinct local chromatin environments via pioneer factor activity
-
5391375,.;: –
-
Sammons MA, Zhu J, Drake AM, Berger SL, TP53 engagement with the genome occurs in distinct local chromatin environments via pioneer factor activity. Genome Res. 2015;25: 179–188. doi: 10.1101/gr.181883.11425391375
-
(2015)
Genome Res
, vol.25
, pp. 179-188
-
-
Sammons, M.A.1
Zhu, J.2
Drake, A.M.3
Berger, S.L.4
-
10
-
-
77956880485
-
P63 in Skin Development and Ectodermal Dysplasias
-
0445549,.;: –
-
Koster MI, P63 in Skin Development and Ectodermal Dysplasias. J Invest Dermatol. 2010;130: 2352–8. doi: 10.1038/jid.2010.11920445549
-
(2010)
J Invest Dermatol
, vol.130
, pp. 2352-2358
-
-
Koster, M.I.1
-
11
-
-
80052000538
-
Dynamic exchange at regulatory elements during chromatin remodeling underlies assisted loading mechanism
-
1835447,..;: –
-
Voss TC, Schiltz RL, Sung MH, Yen PM, Stamatoyannopoulos JA, Biddie SC, et al. Dynamic exchange at regulatory elements during chromatin remodeling underlies assisted loading mechanism. Cell. 2011;146: 544–554. doi: 10.1016/j.cell.2011.07.00621835447
-
(2011)
Cell
, vol.146
, pp. 544-554
-
-
Voss, T.C.1
Schiltz, R.L.2
Sung, M.H.3
Yen, P.M.4
Stamatoyannopoulos, J.A.5
Biddie, S.C.6
-
12
-
-
84892800329
-
Dynamic regulation of transcriptional states by chromatin and transcription factors
-
pp. –
-
Voss TC, Hager GL, Dynamic regulation of transcriptional states by chromatin and transcription factors. Nature reviews. Genetics. 2014. pp. 69–81.
-
(2014)
Nature reviews. Genetics
, pp. 69-81
-
-
Voss, T.C.1
Hager, G.L.2
-
13
-
-
84946546024
-
Zelda is differentially required for chromatin accessibility, transcription-factor binding and gene expression in the early Drosophila embryo
-
Schulz KN, Bondra ER, Moshe A, Villalta JE, Lieb JD, Kaplan T, et al. Zelda is differentially required for chromatin accessibility, transcription-factor binding and gene expression in the early Drosophila embryo. Genome Res. 2015;
-
(2015)
Genome Res
-
-
Schulz, K.N.1
Bondra, E.R.2
Moshe, A.3
Villalta, J.E.4
Lieb, J.D.5
Kaplan, T.6
-
14
-
-
0036184236
-
Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4
-
1864602,.;: –
-
Cirillo LA, Lin FR, Cuesta I, Friedman D, Jarnik M, Zaret KS, Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4. Mol Cell. 2002;9: 279–289. 11864602
-
(2002)
Mol Cell
, vol.9
, pp. 279-289
-
-
Cirillo, L.A.1
Lin, F.R.2
Cuesta, I.3
Friedman, D.4
Jarnik, M.5
Zaret, K.S.6
-
15
-
-
84893863046
-
Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape
-
4441470,..;: –
-
Sherwood RI, Hashimoto T, O’Donnell CW, Lewis S, Barkal A a, van Hoff JP, et al. Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape. Nat Biotechnol. 2014;32: 171–8. doi: 10.1038/nbt.279824441470
-
(2014)
Nat Biotechnol
, vol.32
, pp. 171-178
-
-
Sherwood, R.I.1
Hashimoto, T.2
O’Donnell, C.W.3
Lewis, S.4
Barkal, A.5
van Hoff, J.P.6
-
16
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
2955616,.;: –
-
Bernstein BE, Birney E, Dunham I, Green ED, Gunter C, Snyder M, An integrated encyclopedia of DNA elements in the human genome. Nature. 2012;489: 57–74. doi: 10.1038/nature1124722955616
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
Bernstein, B.E.1
Birney, E.2
Dunham, I.3
Green, E.D.4
Gunter, C.5
Snyder, M.6
-
17
-
-
84865755978
-
The accessible chromatin landscape of the human genome
-
Nature Publishing Group;;: –
-
Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, et al. The accessible chromatin landscape of the human genome. Nature. Nature Publishing Group; 2012;488: 75–82.
-
(2012)
Nature
, vol.488
, pp. 75-82
-
-
Thurman, R.E.1
Rynes, E.2
Humbert, R.3
Vierstra, J.4
Maurano, M.T.5
Haugen, E.6
-
18
-
-
45149105926
-
Efficient control of population structure in model organism association mapping
-
8385116,..;: –
-
Kang HM, Zaitlen NA, Wade CM, Kirby A, Heckerman D, Daly MJ, et al. Efficient control of population structure in model organism association mapping. Genetics. 2008;178: 1709–1723. doi: 10.1534/genetics.107.08010118385116
-
(2008)
Genetics
, vol.178
, pp. 1709-1723
-
-
Kang, H.M.1
Zaitlen, N.A.2
Wade, C.M.3
Kirby, A.4
Heckerman, D.5
Daly, M.J.6
-
19
-
-
77950301214
-
Variance component model to account for sample structure in genome-wide association studies
-
0208533,..;: –
-
Kang HM, Sul JH, Service SK, Zaitlen NA, Kong S-Y, Freimer NB, et al. Variance component model to account for sample structure in genome-wide association studies. Nat Genet. 2010;42: 348–54. doi: 10.1038/ng.54820208533
-
(2010)
Nat Genet
, vol.42
, pp. 348-354
-
-
Kang, H.M.1
Sul, J.H.2
Service, S.K.3
Zaitlen, N.A.4
Kong, S.-Y.5
Freimer, N.B.6
-
20
-
-
80053372166
-
FaST linear mixed models for genome-wide association studies
-
1892150,.. pp. –
-
Lippert C, Listgarten J, Liu Y, Kadie CM, Davidson RI, Heckerman D, FaST linear mixed models for genome-wide association studies. Nature Methods. 2011. pp. 833–835. doi: 10.1038/nmeth.168121892150
-
(2011)
Nature Methods
, pp. 833-835
-
-
Lippert, C.1
Listgarten, J.2
Liu, Y.3
Kadie, C.M.4
Davidson, R.I.5
Heckerman, D.6
-
21
-
-
84874809425
-
HOCOMOCO: A comprehensive collection of human transcription factor binding sites models
-
Kulakovskiy I V, Medvedeva YA, Schaefer U, Kasianov AS, Vorontsov IE, Bajic VB, et al. HOCOMOCO: A comprehensive collection of human transcription factor binding sites models. Nucleic Acids Res. 2013;41.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Kulakovskiy, I.V.1
Medvedeva, Y.A.2
Schaefer, U.3
Kasianov, A.S.4
Vorontsov, I.E.5
Bajic, V.B.6
-
22
-
-
77953289247
-
Early B cell factor 1 regulates B cell gene networks by activation, repression, and transcription- independent poising of chromatin
-
0451411,..;: –
-
Treiber T, Mandel EM, Pott S, Gy??ry I, Firner S, Liu ET, et al. Early B cell factor 1 regulates B cell gene networks by activation, repression, and transcription- independent poising of chromatin. Immunity. 2010;32: 714–725. doi: 10.1016/j.immuni.2010.04.01320451411
-
(2010)
Immunity
, vol.32
, pp. 714-725
-
-
Treiber, T.1
Mandel, E.M.2
Pott, S.3
Gyry, I.4
Firner, S.5
Liu, E.T.6
-
23
-
-
77953006022
-
Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities
-
0378718,..;: –
-
Jolma A, Kivioja T, Toivonen J, Cheng L, Wei G, Enge M, et al. Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities. Genome Res. 2010;20: 861–873. doi: 10.1101/gr.100552.10920378718
-
(2010)
Genome Res
, vol.20
, pp. 861-873
-
-
Jolma, A.1
Kivioja, T.2
Toivonen, J.3
Cheng, L.4
Wei, G.5
Enge, M.6
-
24
-
-
84876529769
-
TFClass: An expandable hierarchical classification of human transcription factors
-
Wingender E, Schoeps T, Dönitz J, TFClass: An expandable hierarchical classification of human transcription factors. Nucleic Acids Res. 2013;41.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Wingender, E.1
Schoeps, T.2
Dönitz, J.3
-
25
-
-
84865739425
-
Architecture of the human regulatory network derived from ENCODE data
-
2955619,..;: –
-
Gerstein MB, Kundaje A, Hariharan M, Landt SG, Yan K-K, Cheng C, et al. Architecture of the human regulatory network derived from ENCODE data. Nature. 2012;489: 91–100. doi: 10.1038/nature1124522955619
-
(2012)
Nature
, vol.489
, pp. 91-100
-
-
Gerstein, M.B.1
Kundaje, A.2
Hariharan, M.3
Landt, S.G.4
Yan, K.-K.5
Cheng, C.6
-
26
-
-
84923362619
-
Integrative analysis of 111 reference human epigenomes
-
5693563,..;: –
-
Kundaje Anshul Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, et al. Integrative analysis of 111 reference human epigenomes. Nature. 2015;518: 317–330. doi: 10.1038/nature1424825693563
-
(2015)
Nature
, vol.518
, pp. 317-330
-
-
Kundaje1
Anshul Meuleman, W.2
Ernst, J.3
Bilenky, M.4
Yen, A.5
Heravi-Moussavi, A.6
Kheradpour, P.7
-
27
-
-
84897147399
-
Nuclear receptors, RXR, and the big bang
-
4679540,.. pp. –
-
Evans RM, Mangelsdorf DJ, Nuclear receptors, RXR, and the big bang. Cell. 2014. pp. 255–266. doi: 10.1016/j.cell.2014.03.01224679540
-
(2014)
Cell
, pp. 255-266
-
-
Evans, R.M.1
Mangelsdorf, D.J.2
-
28
-
-
33751541647
-
International Union of Pharmacology. LXV. The Pharmacology and Classification of the Nuclear Receptor Superfamily: Glucocorticoid, Mineralocorticoid, Progesterone, and Androgen Receptors
-
7132855,..;: –
-
Lu NZ, Wardell SE, Burnstein KL, Defranco D, Fuller PJ, Giguere V, et al. International Union of Pharmacology. LXV. The Pharmacology and Classification of the Nuclear Receptor Superfamily: Glucocorticoid, Mineralocorticoid, Progesterone, and Androgen Receptors. Pharmacol Rev. 2006;58: 782–97. doi: 10.1124/pr.58.4.917132855
-
(2006)
Pharmacol Rev
, vol.58
, pp. 782-797
-
-
Lu, N.Z.1
Wardell, S.E.2
Burnstein, K.L.3
Defranco, D.4
Fuller, P.J.5
Giguere, V.6
-
29
-
-
84941051170
-
STRING v10: Protein-protein interaction networks, integrated over the tree of life
-
5352553,..;: –
-
Szklarczyk D, Franceschini A, Wyder S, Forslund K, Heller D, Huerta-Cepas J, et al. STRING v10: Protein-protein interaction networks, integrated over the tree of life. Nucleic Acids Res. 2015;43: D447–D452. doi: 10.1093/nar/gku100325352553
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D447-D452
-
-
Szklarczyk, D.1
Franceschini, A.2
Wyder, S.3
Forslund, K.4
Heller, D.5
Huerta-Cepas, J.6
-
30
-
-
84877978530
-
Mechanisms and models of somatic cell reprogramming
-
3681063,.;: –
-
Buganim Y, Faddah DA, Jaenisch R, Mechanisms and models of somatic cell reprogramming. Nat Rev Genet. 2013;14: 427–439. doi: 10.1038/nrg347323681063
-
(2013)
Nat Rev Genet
, vol.14
, pp. 427-439
-
-
Buganim, Y.1
Faddah, D.A.2
Jaenisch, R.3
-
31
-
-
84896338378
-
Single-molecule dynamics of enhanceosome assembly in embryonic stem cells
-
4630727,..;: –
-
Chen J, Zhang Z, Li L, Chen BC, Revyakin A, Hajj B, et al. Single-molecule dynamics of enhanceosome assembly in embryonic stem cells. Cell. 2014;156: 1274–1285. doi: 10.1016/j.cell.2014.01.06224630727
-
(2014)
Cell
, vol.156
, pp. 1274-1285
-
-
Chen, J.1
Zhang, Z.2
Li, L.3
Chen, B.C.4
Revyakin, A.5
Hajj, B.6
-
32
-
-
0037711399
-
The circadian clock: pacemaker and tumour suppressor
-
2724733,.;: –
-
Fu L, Lee CC, The circadian clock: pacemaker and tumour suppressor. Nat Rev Cancer. 2003;3: 350–361. doi: 10.1038/nrc107212724733
-
(2003)
Nat Rev Cancer
, vol.3
, pp. 350-361
-
-
Fu, L.1
Lee, C.C.2
-
33
-
-
79960072084
-
AP-2γ regulates oestrogen receptor-mediated long-range chromatin interaction and gene transcription
-
1572391,..;: –
-
Tan SK, Lin ZH, Chang CW, Varang V, Chng KR, Pan YF, et al. AP-2γ regulates oestrogen receptor-mediated long-range chromatin interaction and gene transcription. EMBO J. 2011;30: 2569–2581. doi: 10.1038/emboj.2011.15121572391
-
(2011)
EMBO J
, vol.30
, pp. 2569-2581
-
-
Tan, S.K.1
Lin, Z.H.2
Chang, C.W.3
Varang, V.4
Chng, K.R.5
Pan, Y.F.6
-
34
-
-
40349116161
-
C/EBPbeta induces chromatin opening at a cell-type-specific enhancer
-
8195047,.;: –
-
Plachetka A, Chayka O, Wilczek C, Melnik S, Bonifer C, Klempnauer K-H, C/EBPbeta induces chromatin opening at a cell-type-specific enhancer. Mol Cell Biol. 2008;28: 2102–2112. doi: 10.1128/MCB.01943-0718195047
-
(2008)
Mol Cell Biol
, vol.28
, pp. 2102-2112
-
-
Plachetka, A.1
Chayka, O.2
Wilczek, C.3
Melnik, S.4
Bonifer, C.5
Klempnauer, K.-H.6
-
35
-
-
84902184462
-
Reorganization of enhancer patterns in transition from naive to primed pluripotency
-
4905168,..;: –
-
Buecker C, Srinivasan R, Wu Z, Calo E, Acampora D, Faial T, et al. Reorganization of enhancer patterns in transition from naive to primed pluripotency. Cell Stem Cell. 2014;14: 838–853. doi: 10.1016/j.stem.2014.04.00324905168
-
(2014)
Cell Stem Cell
, vol.14
, pp. 838-853
-
-
Buecker, C.1
Srinivasan, R.2
Wu, Z.3
Calo, E.4
Acampora, D.5
Faial, T.6
-
36
-
-
84856641109
-
NF-KB, the first quarter-century: Remarkable progress and outstanding questions
-
2302935,.;: –
-
Hayden MS, Ghosh S, NF-KB, the first quarter-century: Remarkable progress and outstanding questions. Genes Dev. 2012;26: 203–234. doi: 10.1101/gad.183434.11122302935
-
(2012)
Genes Dev
, vol.26
, pp. 203-234
-
-
Hayden, M.S.1
Ghosh, S.2
-
37
-
-
84885961937
-
A common docking domain in progesterone receptor-B links DUSP6 and CK2 signaling to proliferative transcriptional programs in breast cancer cells
-
3921636,.;: –
-
Hagan CR, Knutson TP, Lange CA, A common docking domain in progesterone receptor-B links DUSP6 and CK2 signaling to proliferative transcriptional programs in breast cancer cells. Nucleic Acids Res. 2013;41: 8926–8942. doi: 10.1093/nar/gkt70623921636
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 8926-8942
-
-
Hagan, C.R.1
Knutson, T.P.2
Lange, C.A.3
-
38
-
-
77749245810
-
c-Rel: A pioneer in directing regulatory T-cell lineage commitment?
-
0162555,. pp. –
-
Hori S, c-Rel: A pioneer in directing regulatory T-cell lineage commitment?European Journal of Immunology. 2010. pp. 664–667. doi: 10.1002/eji.20104037220162555
-
(2010)
European Journal of Immunology
, pp. 664-667
-
-
Hori, S.1
-
39
-
-
71149108056
-
Correlation of mRNA and protein in complex biological samples
-
9850042,.. pp. –
-
Maier T, Güell M, Serrano L, Correlation of mRNA and protein in complex biological samples. FEBS Letters. 2009. pp. 3966–3973. doi: 10.1016/j.febslet.2009.10.03619850042
-
(2009)
FEBS Letters
, pp. 3966-3973
-
-
Maier, T.1
Güell, M.2
Serrano, L.3
-
40
-
-
84929015296
-
The human transcriptome across tissues and individuals
-
Mele M, Ferreira PG, Reverter F, DeLuca DS, Monlong J, Sammeth M, et al. The human transcriptome across tissues and individuals. Science (80-). 2015;348: 660–665.
-
(2015)
Science (80-)
, vol.348
, pp. 660-665
-
-
Mele, M.1
Ferreira, P.G.2
Reverter, F.3
DeLuca, D.S.4
Monlong, J.5
Sammeth, M.6
-
41
-
-
77953612976
-
PLZF/ZBTB16, a glucocorticoid response gene in acute lymphoblastic leukemia, interferes with glucocorticoid-induced apoptosis
-
0435142,..;: –
-
Wasim M, Carlet M, Mansha M, Greil R, Ploner C, Trockenbacher A, et al. PLZF/ZBTB16, a glucocorticoid response gene in acute lymphoblastic leukemia, interferes with glucocorticoid-induced apoptosis. J Steroid Biochem Mol Biol. 2010;120: 218–227. doi: 10.1016/j.jsbmb.2010.04.01920435142
-
(2010)
J Steroid Biochem Mol Biol
, vol.120
, pp. 218-227
-
-
Wasim, M.1
Carlet, M.2
Mansha, M.3
Greil, R.4
Ploner, C.5
Trockenbacher, A.6
-
42
-
-
84862219142
-
Regulation of the glucocorticoid response to stress-related disorders by the Hsp90-binding immunophilin FKBP51
-
pp. –
-
Galigniana NM, Ballmer LT, Toneatto J, Erlejman AG, Lagadari M, Galigniana MD, Regulation of the glucocorticoid response to stress-related disorders by the Hsp90-binding immunophilin FKBP51. Journal of Neurochemistry. 2012. pp. 4–18.
-
(2012)
Journal of Neurochemistry
, pp. 4-18
-
-
Galigniana, N.M.1
Ballmer, L.T.2
Toneatto, J.3
Erlejman, A.G.4
Lagadari, M.5
Galigniana, M.D.6
-
43
-
-
84930762176
-
Glucocorticoids promote structural and functional maturation of foetal cardiomyocytes: a role for PGC-1α
-
Rog-Zielinska E a, Craig M, Manning JR, Richardson R V, Gowans GJ, Dunbar DR, et al. Glucocorticoids promote structural and functional maturation of foetal cardiomyocytes: a role for PGC-1α. Cell Death Differ. 2015;22: 1–11.
-
(2015)
Cell Death Differ
, vol.22
, pp. 1-11
-
-
Rog-Zielinska, E.1
Craig, M.2
Manning, J.R.3
Richardson, R.V.4
Gowans, G.J.5
Dunbar, D.R.6
-
44
-
-
79953300078
-
FIMO: Scanning for occurrences of a given motif
-
1330290,.;: –
-
Grant CE, Bailey TL, Noble WS, FIMO: Scanning for occurrences of a given motif. Bioinformatics. 2011;27: 1017–1018. doi: 10.1093/bioinformatics/btr06421330290
-
(2011)
Bioinformatics
, vol.27
, pp. 1017-1018
-
-
Grant, C.E.1
Bailey, T.L.2
Noble, W.S.3
-
45
-
-
84864147180
-
BEDOPS: High-performance genomic feature operations
-
2576172,..;: –
-
Neph S, Kuehn MS, Reynolds AP, Haugen E, Thurman RE, Johnson AK, et al. BEDOPS: High-performance genomic feature operations. Bioinformatics. 2012;28: 1919–1920. doi: 10.1093/bioinformatics/bts27722576172
-
(2012)
Bioinformatics
, vol.28
, pp. 1919-1920
-
-
Neph, S.1
Kuehn, M.S.2
Reynolds, A.P.3
Haugen, E.4
Thurman, R.E.5
Johnson, A.K.6
-
46
-
-
85011384890
-
-
Efron B. Large-Scale Inference: Empirical Bayes Methods for Estimation, Testing, and Prediction (Institute of Mathematical Statistics Monographs). Reprint. Cambridge University Press; 2013.
-
(2013)
-
-
Efron, B.1
-
47
-
-
77951428390
-
Successive normalization of rectangular arrays
-
0473354,.;: –
-
Olshen RA, Rajaratnam B, Successive normalization of rectangular arrays. Ann Stat. 2010;38: 1638–1664. doi: 10.1214/09-AOS74320473354
-
(2010)
Ann Stat
, vol.38
, pp. 1638-1664
-
-
Olshen, R.A.1
Rajaratnam, B.2
-
48
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
2925520,..;: –
-
Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, et al. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics. 2003;4: 249–264. doi: 10.1093/biostatistics/4.2.24912925520
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
-
49
-
-
77957230671
-
A framework for oligonucleotide microarray preprocessing
-
0688976,.;: –
-
Carvalho BS, Irizarry RA, A framework for oligonucleotide microarray preprocessing. Bioinformatics. 2010;26: 2363–2367. doi: 10.1093/bioinformatics/btq43120688976
-
(2010)
Bioinformatics
, vol.26
, pp. 2363-2367
-
-
Carvalho, B.S.1
Irizarry, R.A.2
-
50
-
-
84874508731
-
Stemformatics: Visualisation and sharing of stem cell gene expression
-
3466562,..;: –
-
Wells CA, Mosbergen R, Korn O, Choi J, Seidenman N, Matigian NA, et al. Stemformatics: Visualisation and sharing of stem cell gene expression. Stem Cell Res. 2013;10: 387–395. doi: 10.1016/j.scr.2012.12.00323466562
-
(2013)
Stem Cell Res
, vol.10
, pp. 387-395
-
-
Wells, C.A.1
Mosbergen, R.2
Korn, O.3
Choi, J.4
Seidenman, N.5
Matigian, N.A.6
-
51
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
2538238,.;: –
-
Bolstad BM, Irizarry R, Astrand M, Speed TP, A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics. 2003;19: 185–193. 12538238
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.2
Astrand, M.3
Speed, T.P.4
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