Complete genome sequence of Pediococcus pentosaceus strain wikim 20, isolated from Korean kimchi

Genome Announcements

Volumn 4, Issue 6, 2016, Pages

  Lee, Se Hee ^a   Jung, Min Young ^a   Park, Boyeon ^a   Sung Oh, Sohn ^a   Park, Hae Woong ^a   Choi, Hak Jong ^a   Lee, Jong Hee ^a  

^a World Institute of Kimchi an Annex of Korea Food Research Institute   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85010304303     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.01233-16     Document Type: Article

References (13)

1. Cheigh HS, Park KY, Lee CY. 1994. Biochemical, microbiological, and nutritional aspects of kimchi (Korean fermented vegetable products). Crit Rev Food Sci Nutr 34:175-203. http://dx.doi.org/10.1080/10408399409527656.
2. Cho J, Lee D, Yang C, Jeon J, Kim J, Han H. 2006. Microbial population dynamics of kimchi, a fermented cabbage product. FEMS Microbiol Lett 257:262-267. http://dx.doi.org/10.1111/j.1574-6968.2006.00186.x.
3. Jung JY, Lee SH, Jeon CO. 2014. Kimchi microflora: history, current status, and perspectives for industrial kimchi production. Appl Microbiol Biotechnol 98:2385-2393. http://dx.doi.org/10.1007/s00253-014-5513-1.
4. Lee SH, Jung JY, Jeon CO. 2015. Source tracking and succession of kimchi lactic acid bacteria during fermentation. J Food Sci 80: M1871-M1877. http://dx.doi.org/10.1111/1750-3841.12948.
5. Cai Y, Kumai S, Ogawa M, Benno Y, Nakase T. 1999. Characterization and identification of Pediococcus species isolated from forage crops and their application for silage preparation. Appl Environ Microbiol 65: 2901-2906.
6. Jonganurakkun B, Wang Q, Xu SH, Tada Y, Minamida K, Yasokawa D, Sugi M, Hara H, Asano K. 2008. Pediococcus pentosaceus NB-17 for probiotics use. J Biosci Bioeng 106:69-73. http://dx.doi.org/10.1263/jbb.106.69.
7. Osmanağaoğlu O, Beyatli Y, Gündüz U, Saçilik SC. 2000. Analysis of the genetic determinant for production of the pediocin P of Pediococcus pentosaceus Pep1. J Basic Microbiol 40:233-241. http://dx.doi.org/10.1002/1521-4028(200008)40:4<233::AID-JOBM233>3.0.CO;2-H.
8. Shin MS, Han SK, Ryu JS, Kim KS, Lee WK. 2008. Isolation and partial characterization of a bacteriocin produced by Pediococcus pentosaceus K23-2 isolated from kimchi. J Appl Microbiol 105:331-339. http://dx.doi.org/10.1111/j.1365-2672.2008.03770.x.
9. Pruitt KD, Tatusova T, Klimke W, Maglott DR. 2009. NCBI Reference Sequences: current status, policy and new initiatives. Nucleic Acids Res 37:D32-D36. http://dx.doi.org/10.1093/nar/gkn721.
10. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25: 955-964. http://dx.doi.org/10.1093/nar/25.5.0955.
11. Lagesen K, Hallin P, Rødland EA, Staerfeldt H-H, Rognes T, Ussery DW. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res 35:3100-3108. http://dx.doi.org/10.1093/nar/gkm160.
12. Van Domselaar GH, Stothard P, Shrivastava S, Cruz JA, Guo A, Dong X, Lu P, Szafron D, Greiner R, Wishart DS. 2005. BASys: a web server for automated bacterial genome annotation. Nucleic Acids Res 33: W455-W459. http://dx.doi.org/10.1093/nar/gki593.
13. Delcher AL, Harmon D, Kasif S, White O, Salzberg SL. 1999. Improved microbial gene identification with glimmer. Nucleic Acids Res 27: 4636-4641. http://dx.doi.org/10.1093/nar/27.23.4636.