SMiLE-seq identifies binding motifs of single and dimeric transcription factors

Nature Methods

Volumn 14, Issue 3, 2017, Pages 316-322

  Isakova, Alina ^a,b   Groux, Romain ^a,b   Imbeault, Michael ^a   Rainer, Pernille ^a   Alpern, Daniel ^a,b   Dainese, Riccardo ^a,b   Ambrosini, Giovanna ^a,b   Trono, Didier ^a   Bucher, Philipp ^a,b   Deplancke, Bart ^a,b  

^a EPFL   (Switzerland)

^b SWISS INSTITUTE OF BIOINFORMATICS   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

CELL NUCLEUS RECEPTOR; DNA; HETERODIMER; KRUPPEL LIKE FACTOR; PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA; RETINOID X RECEPTOR ALPHA; TRANSCRIPTION FACTOR; ZINC FINGER PROTEIN; DNA BINDING PROTEIN; PROTEIN C FOS; STRESS ACTIVATED PROTEIN KINASE;

ARTICLE; AUTOMATION; BINDING AFFINITY; CAPILLARY; DIMERIZATION; DNA BINDING; DNA BINDING MOTIF; DNA STRUCTURE; DROSOPHILA; HIDDEN MARKOV MODEL; HIGH THROUGHPUT SEQUENCING; HUMAN; IN VITRO STUDY; MICROFLUIDICS; MOLECULAR INTERACTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN DNA INTERACTION; PROTEIN MOTIF; SURFACE PROPERTY; ANIMAL; BINDING SITE; BIOLOGY; CYS2-HIS2 ZINC FINGER MOTIF; DNA SEQUENCE; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MOUSE; PHYSIOLOGY; PROCEDURES;

ANIMALS; BINDING SITES; COMPUTATIONAL BIOLOGY; CYS2-HIS2 ZINC FINGERS; DNA; DNA-BINDING PROTEINS; DROSOPHILA; GENE EXPRESSION REGULATION; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; JNK MITOGEN-ACTIVATED PROTEIN KINASES; MICE; MICROFLUIDICS; PROTO-ONCOGENE PROTEINS C-FOS; SEQUENCE ANALYSIS, DNA; TRANSCRIPTION FACTORS;

EID: 85009826815     PISSN: 15487091     EISSN: 15487105     Source Type: Journal    
DOI: 10.1038/nmeth.4143     Document Type: Article

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