Data-collection strategy for challenging native SAD phasing

Acta Crystallographica Section D: Structural Biology

Volumn 72, Issue 3, 2016, Pages 421-429

  Olieric, Vincent ^a   Weinert, Tobias ^a   Finke, Aaron D ^a   Anders, Carolin ^b   Li, Dianfan ^c   Olieric, Natacha ^a   Borca, Camelia N ^a   Steinmetz, Michel O ^a   Caffrey, Martin ^c   Jinek, Martin ^b   Wang, Meitian ^a  

^a PAUL SCHERRER INSTITUTE   (Switzerland)

^b UNIVERSITY OF ZURICH   (Switzerland)

^c TRINITY COLLEGE DUBLIN   (Ireland)

Author keywords

anomalous signal; complex; data collection strategy; membrane protein; native SAD phasing

Indexed keywords

CRISPR ASSOCIATED PROTEIN; DIACYLGLYCEROL KINASE; DNA; GUIDE RNA; PROTEIN; STATHMIN; TUBULIN;

ANIMAL; BOVINE; CHEMISTRY; ENZYMOLOGY; ESCHERICHIA COLI; MOLECULAR MODEL; PROCEDURES; PROTEIN CONFORMATION; RAT; STAPHYLOCOCCUS; X RAY CRYSTALLOGRAPHY;

ANIMALS; CATTLE; CRISPR-ASSOCIATED PROTEINS; CRYSTALLOGRAPHY, X-RAY; DIACYLGLYCEROL KINASE; DNA; ESCHERICHIA COLI; MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTEINS; RATS; RNA, GUIDE; STAPHYLOCOCCUS; STATHMIN; TUBULIN;

EID: 85008932834     PISSN: None     EISSN: 20597983     Source Type: Journal    
DOI: 10.1107/S2059798315024110     Document Type: Article

References (38)

1. Adams, P. D., et al. (2010). Acta Cryst. D66, 213-221.
2. Akey, D. L., Brown, W. C., Konwerski, J. R., Ogata, C. M. & Smith, J. L. (2014). Acta Cryst. D70, 2719-2729.
3. Allan, D. R., Collins, S. P., Evans, G., Hall, D., McAuley, K., Owen, R. L., Sorensen, T., Tang, C. C., von Delft, F., Wagner, A. & Wilhelm, H. (2015). Eur. Phys. J. Plus, 130, 56.
4. Anders, C., Niewoehner, O., Duerst, A. & Jinek, M. (2014). Nature (London), 513, 569-573.
5. Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N. & Bourne, P. E. (2000). Nucleic Acids Res. 28, 235-242.
6. Brockhauser, S., Ravelli, R. B. G. & McCarthy, A. A. (2013). Acta Cryst. D69, 1241-1251.
7. Bunkoczi, G., McCoy, A. J., Echols, N., Grosse-Kunstleve, R. W., Adams, P. D., Holton, J. M., Read, R. J. & Terwilliger, T. C. (2015). Nature Methods, 12, 127-130.
8. DallAntonia, F. & Schneider, T. R. (2006). J. Appl. Cryst. 39, 618-619.
9. Debreczeni, J.E., Bunkoczi, G., Ma, Q., Blaser, H. & Sheldrick, G. M. (2003). Acta Cryst. D59, 688-696.
10. DeLano, W. L. (2002). PyMOL. http://www.pymol.org.
11. Echols, N., Morshed, N., Afonine, P. V., McCoy, A. J., Miller, M. D., Read, R. J., Richardson, J. S., Terwilliger, T. C. & Adams, P. D. (2014). Acta Cryst. D70, 1104-1114.
12. El Omari, K., Iourin, O., Kadlec, J., Fearn, R., Hall, D. R., Harlos, K., Grimes, J. M. & Stuart, D. I. (2014). Acta Cryst. D70, 2197-2203.
13. Finke, A. D., Panepucci, E., Vonrhein, C., Wang, M., Bricogne, G. & Olieric, V. (2016). Methods Mol. Biol. 1320, 175-191.
14. Hendrickson, W. A. (2014). Q. Rev. Biophys. 47, 49-93.
15. Hendrickson, W. A. & Teeter, M. M. (1981). Nature (London), 290, 107-113.
16. Henrich, B., Bergamaschi, A., Broennimann, C., Dinapoli, R., Eikenberry, E. F., Johnson, I., Kobas, M., Kraft, P., Mozzanica, A. & Schmitt, B. (2009). Nucl. Instrum. Methods Phys. Res. A, 607, 247-249.
17. Huang, C.-Y., Olieric, V., Ma, P., Panepucci, E., Diederichs, K., Wang, M. & Caffrey, M. (2015). Acta Cryst. D71, 1238-1256.
18. Kabsch, W. (2010). Acta Cryst. D66, 125-132.
19. Karplus, P. A. & Diederichs, K. (2012). Science, 336, 1030-1033.
20. Karplus, P. A. & Diederichs, K. (2015). Curr. Opin. Struct. Biol. 34, 60-68.
21. Klinke, S., Foos, N., Rinaldi, J. J., Paris, G., Goldbaum, F. A., Legrand, P., Guimaraes, B. G. & Thompson, A. (2015). Acta Cryst. D71, 1433-1443.
22. Li, D., Lyons, J. A., Pye, V. E., Vogeley, L., Aragao, D., Kenyon, C. P., Shah, S. T. A., Doherty, C., Aherne, M. & Caffrey, M. (2013). Nature (London), 497, 521-524.
23. Liu, Q., Dahmane, T., Zhang, Z., Assur, Z., Brasch, J., Shapiro, L., Mancia, F. & Hendrickson, W. A. (2012). Science, 336, 1033-1037.
24. Liu, Q., Guo, Y., Chang, Y., Cai, Z., Assur, Z., Mancia, F., Greene, M. I. & Hendrickson, W. A. (2014). Acta Cryst. D70, 2544-2557.
25. Liu, Q., Liu, Q. & Hendrickson, W. A. (2013). Acta Cryst. D69, 1314-1332.
26. Mueller-Dieckmann, C., Panjikar, S., Schmidt, A., Mueller, S., Kuper, J., Geerlof, A., Wilmanns, M., Singh, R. K., Tucker, P. A. & Weiss, M. S. (2007). Acta Cryst. D63, 366-380.
27. Mueller-Dieckmann, C., Panjikar, S., Tucker, P. A. & Weiss, M. S. (2005). Acta Cryst. D61, 1263-1272.
28. Pape, T. & Schneider, T. R. (2004). J. Appl. Cryst. 37, 843-844.
29. Papp, T. & Campbell, J. L. (2001). X-ray Spectrom. 30, 77-82.
30. Prota, A. E., Bargsten, K., Zurwerra, D., Field, J. J., Diaz, J. F., Altmann, K.-H. & Steinmetz, M. O. (2013). Science, 339, 587-590.
31. Prota, A. E., Magiera, M. M., Kuijpers, M., Bargsten, K., Frey, D., Wieser, M., Jaussi, R., Hoogenraad, C. C., Kammerer, R. A., Janke, C. & Steinmetz, M. O. (2013). J. Cell Biol. 200, 259-270.
32. Rose, J. P., Wang, B.-C. & Weiss, M. S. (2015). IUCrJ, 2, 431-440.
33. Sheldrick, G. M. (2010). Acta Cryst. D66, 479-485.
34. Sole, V. A., Papillon, E., Cotte, M., Walter, P. & Susini, J. (2007). At. Spectrosc. 62, 63-68.
35. Thorn, A. & Sheldrick, G. M. (2011). J. Appl. Cryst. 44, 1285-1287.
36. Waltersperger, S., Olieric, V., Pradervand, C., Glettig, W., Salathe, M., Fuchs, M. R., Curtin, A., Wang, X., Ebner, S., Panepucci, E., Weinert, T., Schulze-Briese, C. & Wang, M. (2015). J. Synchrotron Rad. 22, 895-900.
37. Weinert, T., et al. (2015). Nature Methods, 12, 131-133.
38. Zeldin, O. B., Gerstel, M. & Garman, E. F. (2013). J. Appl. Cryst. 46, 1225-1230.