Macromolecular X-ray structure determination using weak, single-wavelength anomalous data

Nature Methods

Volumn 12, Issue 2, 2015, Pages 127-130

  Bunkóczi, Gábor ^a   McCoy, Airlie J ^a   Echols, Nathaniel ^b   Grosse Kunstleve, Ralf W ^b   Adams, Paul D ^b   Holton, James M ^b,c   Read, Randy J ^a   Terwilliger, Thomas C ^d  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^b LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d LOS ALAMOS NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

IODINE; IRON; MEMBRANE PROTEIN; MERCURY; SELENIUM; SULFUR; ZINC; MACROMOLECULE;

ARTICLE; ATOM; CHEMICAL STRUCTURE; CRYSTAL; ELECTRON; MACROMOLECULE; PRIORITY JOURNAL; X RAY DIFFRACTION; ALGORITHM; CHEMISTRY; PROCEDURES; SIGNAL NOISE RATIO; SOFTWARE; STATISTICAL MODEL; X RAY CRYSTALLOGRAPHY;

ALGORITHMS; CRYSTALLOGRAPHY, X-RAY; LIKELIHOOD FUNCTIONS; MACROMOLECULAR SUBSTANCES; MODELS, MOLECULAR; SIGNAL-TO-NOISE RATIO; SOFTWARE;

EID: 84926160706     PISSN: 15487091     EISSN: 15487105     Source Type: Journal    
DOI: 10.1038/nmeth.3212     Document Type: Article

References (47)

1. Berman, H.M. et al. Nucleic Acids Res. 28, 235-242 (2000
2. Hendrickson, W.A., & Teeter, M.M. Nature 290, 107-113 (1981
3. Wang, B.-C. Methods Enzymol. 115, 90-112 (1985
4. Weeks, C.M., DeTitta, G.T., Miller, R., & Hauptman, H.A. Acta Crystallogr. D Biol. Crystallogr. 49, 179-181 (1993
5. Schneider, T.R., & Sheldrick, G.M. Acta Crystallogr. D Biol. Crystallogr. 58, 1772-1779 (2002
6. de La Fortelle, E., & Bricogne, G. Methods Enzymol. 276, 472-494 (1997
7. McCoy, A.J., Storoni, L.C., & Read, R.J. Acta Crystallogr. D Biol. Crystallogr. 60, 1220-1228 (2004
8. Pannu, N.S., & Read, R.J. Acta Crystallogr. D Biol. Crystallogr. 60, 22-27 (2004
9. Langer, G., Cohen, S.X., Lamzin, V.S., & Perrakis, A. Nat. Protoc. 3, 1171-1179 (2008
10. Liu, Q. et al. Science 336, 1033-1037 (2012
11. Skubák, P., & Pannu, N.S. Nat. Commun. 4, 2777 (2013
12. Weiss, M.S., Sicker, T., & Hilgenfeld, R. Structure 9, 771-777 (2001
13. Barends, T.R. et al. Nature 505, 244-247 (2014
14. McCoy, A.J., & Read, R.J. Acta Crystallogr. D Biol. Crystallogr. 66, 458-469 (2010
15. Read, R.J., & McCoy, A.J. Acta Crystallogr. D Biol. Crystallogr. 67, 338-344 (2011
16. Grosse-Kunstleve, R.W., & Adams, P.D. Acta Crystallogr. D Biol. Crystallogr. 59, 1966-1973 (2003
17. Adams, P.D. et al. Acta Crystallogr. D Biol. Crystallogr. 66, 213-221 (2010
18. Sheldrick, G.M. Acta Crystallogr. D Biol. Crystallogr. 66, 479-485 (2010
19. Terwilliger, T.C. Acta Crystallogr. D Biol. Crystallogr. 56, 965-972 (2000
20. Terwilliger, T.C. et al. Acta Crystallogr. D Biol. Crystallogr. 65, 582-601 (2009
21. Terwilliger, T.C. et al. Acta Crystallogr. D Biol. Crystallogr. 64, 61-69 (2008
22. Blanc, E. et al. Acta Crystallogr. D Biol. Crystallogr. 60, 2210-2221 (2004
23. Terwilliger, T.C. Acta Crystallogr. D Biol. Crystallogr. 59, 1174-1182 (2003
24. Perrakis, A., Sixma, T.K., Wilson, K.S., & Lamzin, V.S. Acta Crystallogr. D Biol. Crystallogr. 53, 448-455 (1997
25. Read, R.J. Acta Crystallogr. A Found. Adv. 42, 140-149 (1986
26. Levin, I. et al. Proteins 59, 864-868 (2005
27. Xu, Q. et al. Proteins 62, 292-296 (2006
28. Kozbial, P. et al. Proteins 71, 1589-1596 (2008
29. Xu, Q. et al. Structure 17, 303-313 (2009
30. Dauter, Z., Wilson, K.S., Sieker, L.C., Meyer, J., & Moulis, J.M. Biochemistry 36, 16065-16073 (1997
31. Xu, Q. et al. Proteins 69, 433-439 (2007
32. Xu, Q. et al. Proteins 74, 1041-1049 (2009
33. Hwang, W.C. et al. Proteins doi:10.1002/prot.24679 (1 September 2014
34. Abendroth, J. et al. J. Struct. Funct. Genomics 12, 83-95 (2011
35. Martinez-Rucobo, F.W., Sainsbury, S., Cheung, A.C., & Cramer, P. EMBO J. 30, 1302-1310 (2011
36. Chattopadhyay, K., Ramagopal, U.A., Brenowitz, M., Nathenson, S.G., & Almo, S.C. Proc. Natl. Acad. Sci. USA 105, 635-640 (2008
37. Cianci, M., Helliwell, J.R., & Suzuki, A. Acta Crystallogr. D Biol. Crystallogr. 64, 1196-1209 (2008
38. Fabian, M.R. et al. Nat. Struct. Mol. Biol. 20, 735-739 (2013
39. Tanaka, Y. et al. RNA 15, 1498-1506 (2009
40. Thomas, S.R., McTamney, P.M., Adler, J.M., LaRonde-LeBlank, N., & Rokita, S.E. J. Biol. Chem. 284, 19659-19667 (2009
41. de Graaff, R.A.G., Hilge, M., van der Plas, J.L., & Abrahams, J.P. Acta Crystallogr. D Biol. Crystallogr. 57, 1857-1862 (2001
42. Winn, M.D. et al. Acta Crystallogr. D Biol. Crystallogr. 67, 235-242 (2011
43. Panjikar, S. et al. Acta Crystallogr. D Biol. Crystallogr. 61, 449-457 (2005
44. Wang, J.W. et al. Acta Crystallogr. D Biol. Crystallogr. 60, 1991-1996 (2004
45. Burla, M.C. et al. J. Appl. Cryst. 45, 357-361 (2012
46. Terwilliger, T.C., & Berendzen, J. Acta Crystallogr. D Biol. Crystallogr. 55, 849-861 (1999
47. Emsley, P., & Lohkamp, B. Acta Crystallogr. D Biol. Crystallogr. 66, 486-501 (2010).