-
1
-
-
84859972408
-
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
-
Schoch CL, Seifert KA. S Huhndorf, Robert V, Spouge JL, Levesque CA, Chen W, Bolchacova E, Voigt K, Crous PW. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proc Natl Acad Sci. 2012;109(16):6241-6.
-
(2012)
Proc Natl Acad Sci
, vol.109
, Issue.16
, pp. 6241-6246
-
-
Schoch, C.L.1
Seifert, K.A.2
Huhndorf, S.3
Robert, V.4
Spouge, J.L.5
Levesque, C.A.6
Chen, W.7
Bolchacova, E.8
Voigt, K.9
Crous, P.W.10
-
2
-
-
25444501294
-
Influence of fungal fermentation on the development of volatile compounds in the Puer tea manufacturing process
-
Xu X, Yan M, Zhu Y. Influence of fungal fermentation on the development of volatile compounds in the Puer tea manufacturing process. Engineering in Life Sciences. 2005;5(4):382-6.
-
(2005)
Engineering in Life Sciences
, vol.5
, Issue.4
, pp. 382-386
-
-
Xu, X.1
Yan, M.2
Zhu, Y.3
-
3
-
-
33644548340
-
Microbiological analysis and antibacterial effects of the indigenous fermented Puer tea
-
Mo H, Xu X, Yan M, Zhu Y. Microbiological analysis and antibacterial effects of the indigenous fermented Puer tea. Agro food industry hi-tech. 2005;16(6):16-8.
-
(2005)
Agro food industry hi-tech
, vol.16
, Issue.6
, pp. 16-18
-
-
Mo, H.1
Xu, X.2
Yan, M.3
Zhu, Y.4
-
4
-
-
0026316423
-
Species-diagnostic differences in a ribosomal DNA internal transcribed spacer from the sibling species Anopheles freeborni and Anopheles hermsi (Diptera: Culicidae)
-
Porter CH, Collins FH. Species-diagnostic differences in a ribosomal DNA internal transcribed spacer from the sibling species Anopheles freeborni and Anopheles hermsi (Diptera: Culicidae). Am J Trop Med Hyg. 1991;45(2):271-9.
-
(1991)
Am J Trop Med Hyg
, vol.45
, Issue.2
, pp. 271-279
-
-
Porter, C.H.1
Collins, F.H.2
-
5
-
-
38949171000
-
Microbial fermented tea-a potential source of natural food preservatives
-
Mo H, Zhu Y, Chen Z. Microbial fermented tea-a potential source of natural food preservatives. Trends Food Sci Technol. 2008;19(3):124-30.
-
(2008)
Trends Food Sci Technol
, vol.19
, Issue.3
, pp. 124-130
-
-
Mo, H.1
Zhu, Y.2
Chen, Z.3
-
6
-
-
77952946376
-
The evolution of sex: a perspective from the fungal kingdom
-
Lee SC, Ni M, Li W, Shertz C, Heitman J. The evolution of sex: a perspective from the fungal kingdom. Microbiol Mol Biol Rev. 2010;74(2):298-340.
-
(2010)
Microbiol Mol Biol Rev
, vol.74
, Issue.2
, pp. 298-340
-
-
Lee, S.C.1
Ni, M.2
Li, W.3
Shertz, C.4
Heitman, J.5
-
8
-
-
70350337539
-
Sexual reproduction in Aspergillus species of medical or economical importance: why so fastidious?
-
Kwon-Chung KJ, Sugui JA. Sexual reproduction in Aspergillus species of medical or economical importance: why so fastidious? Trends Microbiol. 2009;17(11):481-7.
-
(2009)
Trends Microbiol
, vol.17
, Issue.11
, pp. 481-487
-
-
Kwon-Chung, K.J.1
Sugui, J.A.2
-
9
-
-
83355163609
-
Sexual development and cryptic sexuality in fungi: insights from Aspergillus species
-
Dyer PS, O'Gorman CM. Sexual development and cryptic sexuality in fungi: insights from Aspergillus species. FEMS Microbiol Rev. 2012;36(1):165-92.
-
(2012)
FEMS Microbiol Rev
, vol.36
, Issue.1
, pp. 165-192
-
-
Dyer, P.S.1
O'Gorman, C.M.2
-
10
-
-
78951477324
-
Molecular genetics of Emericella nidulans sexual development
-
Han KH. Molecular genetics of Emericella nidulans sexual development. Mycobiology. 2009;37(3):171-82.
-
(2009)
Mycobiology
, vol.37
, Issue.3
, pp. 171-182
-
-
Han, K.H.1
-
11
-
-
0038818978
-
Environmental factors affecting development of Aspergillus nidulans
-
Han KH, Lee DB, Kim JH, Kim MS, Han KY, Kim WS, Park YS, Kim HB, Han DM. Environmental factors affecting development of Aspergillus nidulans. J Microbiol. 2003;41(1):34-40.
-
(2003)
J Microbiol
, vol.41
, Issue.1
, pp. 34-40
-
-
Han, K.H.1
Lee, D.B.2
Kim, J.H.3
Kim, M.S.4
Han, K.Y.5
Kim, W.S.6
Park, Y.S.7
Kim, H.B.8
Han, D.M.9
-
12
-
-
0035023992
-
Promotion of conidial head formation in Aspergillus oryzae by a salt
-
Song MH, Jy N, Han YS, Han DM, Chae KS. Promotion of conidial head formation in Aspergillus oryzae by a salt. Biotechnol Lett. 2001;23(9):689-91.
-
(2001)
Biotechnol Lett
, vol.23
, Issue.9
, pp. 689-691
-
-
Song, M.H.1
Jy, N.2
Han, Y.S.3
Han, D.M.4
Chae, K.S.5
-
13
-
-
85006562060
-
Study of conditions of Sporogenesis of Aspergillus chevalieri var.intermedius (synonym of Aspergillus cristatus) in FuZhuan Tea
-
Liu ZY, Qin J. li NL. Study of conditions of Sporogenesis of Aspergillus chevalieri var.intermedius (synonym of Aspergillus cristatus) in FuZhuan Tea. Southwest China Journal of Agricultural Science. 1991;4(1):73-7.
-
(1991)
Southwest China Journal of Agricultural Science
, vol.4
, Issue.1
, pp. 73-77
-
-
Liu, Z.Y.1
Qin, J.2
Li, N.L.3
-
14
-
-
34249781134
-
Analysis of characteristic aroma of fungal fermented Fuzhuan brick-tea by gas chromatography/mass spectrophotometry
-
Xu X, Mo H, Yan M, Zhu Y. Analysis of characteristic aroma of fungal fermented Fuzhuan brick-tea by gas chromatography/mass spectrophotometry. J Sci Food Agric. 2007;8(7):1502-4.
-
(2007)
J Sci Food Agric
, vol.8
, Issue.7
, pp. 1502-1504
-
-
Xu, X.1
Mo, H.2
Yan, M.3
Zhu, Y.4
-
15
-
-
12144286398
-
Clustered Pathway Genes in Aflatoxin Biosynthesis
-
Yu JJ, Chang PK, Ehrlich KC, Cary JW, Bhatnagar D, Cleveland TE, Payne GA, Linz JE, Woloshuk CP, Bennett JW. Clustered Pathway Genes in Aflatoxin Biosynthesis. Appl Environ Microbiol. 2004;70(3):1253-62.
-
(2004)
Appl Environ Microbiol
, vol.70
, Issue.3
, pp. 1253-1262
-
-
Yu, J.J.1
Chang, P.K.2
Ehrlich, K.C.3
Cary, J.W.4
Bhatnagar, D.5
Cleveland, T.E.6
Payne, G.A.7
Linz, J.E.8
Woloshuk, C.P.9
Bennett, J.W.10
-
16
-
-
43049161163
-
A fumonisin biosynthetic gene cluster in Fusarium oxysporum strain O-1890 and the genetic basis for B versus C fumonisin production
-
Robert H, Proctor RH, Busman M, Seo JA. Yin Won Lee YW, Plattner RD. A fumonisin biosynthetic gene cluster in Fusarium oxysporum strain O-1890 and the genetic basis for B versus C fumonisin production. Fungal Genet Biol. 2008;45(6):1016-26.
-
(2008)
Fungal Genet Biol
, vol.45
, Issue.6
, pp. 1016-1026
-
-
Robert, H.1
Proctor, R.H.2
Busman, M.3
Seo, J.A.4
Yin Won Lee, Y.W.5
Plattner, R.D.6
-
17
-
-
21744453939
-
Bioinformatic and expression analysis of the putative gliotoxin biosynthetic gene cluster of Aspergillus fumigatus
-
Gardiner DM, Howlett BJ. Bioinformatic and expression analysis of the putative gliotoxin biosynthetic gene cluster of Aspergillus fumigatus. FEMS Microbiology Letter. 2005;248(2):241-8.
-
(2005)
FEMS Microbiology Letter
, vol.248
, Issue.2
, pp. 241-248
-
-
Gardiner, D.M.1
Howlett, B.J.2
-
18
-
-
23044502868
-
Cloning a part of the ochratoxin A biosynthetic gene cluster of Penicillium nordicum and characterization of the ochratoxin polyketide synthase gene
-
Karolewiez J, Geisen R. Cloning a part of the ochratoxin A biosynthetic gene cluster of Penicillium nordicum and characterization of the ochratoxin polyketide synthase gene. Syst Appl Microbiol. 2005;28(7):588-95.
-
(2005)
Syst Appl Microbiol
, vol.28
, Issue.7
, pp. 588-595
-
-
Karolewiez, J.1
Geisen, R.2
-
19
-
-
27944479301
-
Two different polyketide synthase genes are required for synthesis of zearalenone in Gibberella zeae
-
Kim YT, Lee YR, Jin JM, Han KH, Kim H, Kim JC, Lee T, Yun SH, Lee YW. Two different polyketide synthase genes are required for synthesis of zearalenone in Gibberella zeae. Mol Microbiol. 2005;58(4):1102-13.
-
(2005)
Mol Microbiol
, vol.58
, Issue.4
, pp. 1102-1113
-
-
Kim, Y.T.1
Lee, Y.R.2
Jin, J.M.3
Han, K.H.4
Kim, H.5
Kim, J.C.6
Lee, T.7
Yun, S.H.8
Lee, Y.W.9
-
20
-
-
0029912229
-
Twenty-five coregulated transcripts define a sterigmatocystin gene cluster in Aspergillus nidulans
-
Brown DW, Yu JH, Kelkar HS, Fernandes M, Nesbitt TC, Keller NP, Adams TH, Leonard TJ. Twenty-five coregulated transcripts define a sterigmatocystin gene cluster in Aspergillus nidulans. Proc Natl Acad Sci. 1996;93(4):1418-22.
-
(1996)
Proc Natl Acad Sci
, vol.93
, Issue.4
, pp. 1418-1422
-
-
Brown, D.W.1
Yu, J.H.2
Kelkar, H.S.3
Fernandes, M.4
Nesbitt, T.C.5
Keller, N.P.6
Adams, T.H.7
Leonard, T.J.8
-
21
-
-
84871292787
-
Regulation of fungal secondary metabolism
-
Brakhage AA. Regulation of fungal secondary metabolism. Nat Rev Microbiol. 2013;11(1):21-32.
-
(2013)
Nat Rev Microbiol
, vol.11
, Issue.1
, pp. 21-32
-
-
Brakhage, A.A.1
-
22
-
-
84871689083
-
The function and evolution of the Aspergillus genome
-
Gibbons JG, Rokas A. The function and evolution of the Aspergillus genome. Trends Microbiol. 2013;21(1):14-22.
-
(2013)
Trends Microbiol
, vol.21
, Issue.1
, pp. 14-22
-
-
Gibbons, J.G.1
Rokas, A.2
-
23
-
-
0032919364
-
KEGG: Kyoto encyclopedia of genes and genomes
-
Ogata H, Goto S, Sato K, Fujibuchi W, Bono H, Kanehisa M. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 1999;27(1):29-34.
-
(1999)
Nucleic Acids Res
, vol.27
, Issue.1
, pp. 29-34
-
-
Ogata, H.1
Goto, S.2
Sato, K.3
Fujibuchi, W.4
Bono, H.5
Kanehisa, M.6
-
24
-
-
0032928614
-
Mitogen-activated protein kinase: conservation of a three-kinase module from yeast to human
-
Widmann C, Gibson S, Jarpe MB, Johnson GL. Mitogen-activated protein kinase: conservation of a three-kinase module from yeast to human. Physiol Rev. 1999;79(1):143-80.
-
(1999)
Physiol Rev
, vol.79
, Issue.1
, pp. 143-180
-
-
Widmann, C.1
Gibson, S.2
Jarpe, M.B.3
Johnson, G.L.4
-
25
-
-
33846861493
-
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88
-
Pel HJ, DeWinde JH, Archer DB, Dyer PS, Hofmann G, Schaap PJ, Turner G, Vries RP de, Albang R, Albermann K. Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88. Nat Biotechnol. 2007;25:221-31.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 221-231
-
-
Pel, H.J.1
DeWinde, J.H.2
Archer, D.B.3
Dyer, P.S.4
Hofmann, G.5
Schaap, P.J.6
Turner, G.7
Vries, R.P.8
Albang, R.9
Albermann, K.10
-
26
-
-
84925471151
-
Genomic adaptations of the halophilic Dead Sea filamentous fungus Eurotium rubrum
-
Kis-Papo T, Weig AR, Riley R, Persoh D, Salamov A, Sun H, Lipzen A, Wasser SP, Rambold G, Igor V, Grigoriev IV, Nevo E. Genomic adaptations of the halophilic Dead Sea filamentous fungus Eurotium rubrum. Nat Commun. 2014;5:1-8.
-
(2014)
Nat Commun
, vol.5
, pp. 1-8
-
-
Kis-Papo, T.1
Weig, A.R.2
Riley, R.3
Persoh, D.4
Salamov, A.5
Sun, H.6
Lipzen, A.7
Wasser, S.P.8
Rambold, G.9
Igor, V.10
Grigoriev, I.V.11
Nevo, E.12
-
27
-
-
84903140301
-
Abiotic Stress Resistance, a Novel Moonlighting Function of Ribosomal Protein RPL44 in the Halophilic Fungus Aspergillus glaucus
-
Liu XD, Xie LX, Wei Y, Zhou XY, Jia BL, Liu JL, Zhang SH. Abiotic Stress Resistance, a Novel Moonlighting Function of Ribosomal Protein RPL44 in the Halophilic Fungus Aspergillus glaucus. Appl Environ Microbiol. 2014;80(14): 4294-300.
-
(2014)
Appl Environ Microbiol
, vol.80
, Issue.14
, pp. 4294-4300
-
-
Liu, X.D.1
Xie, L.X.2
Wei, Y.3
Zhou, X.Y.4
Jia, B.L.5
Liu, J.L.6
Zhang, S.H.7
-
28
-
-
0034513749
-
Proposed Nomenclature for Mating Type Genes of Filamentous Ascomycetes
-
Turgeon BG, Yoder OC. Proposed Nomenclature for Mating Type Genes of Filamentous Ascomycetes. Fungal Genet Biol. 2000;31(1):1-5.
-
(2000)
Fungal Genet Biol
, vol.31
, Issue.1
, pp. 1-5
-
-
Turgeon, B.G.1
Yoder, O.C.2
-
29
-
-
0025378862
-
Mating type and mating strategies in Neurospora
-
Metzenberg RL, Glass NL. Mating type and mating strategies in Neurospora. BioEssays. 1990;12(2):53-9.
-
(1990)
BioEssays
, vol.12
, Issue.2
, pp. 53-59
-
-
Metzenberg, R.L.1
Glass, N.L.2
-
30
-
-
28844461287
-
Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae
-
Galagan JE, Calve SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, Lee S-I, Basturkmen M, Spevak C, Clutterbuck J, Kapitonov V, Jurka J, Scazzocchio C, Farman M, Butler J, Purcell S, Harris S, Braus GH, Draht O, Busch S, Enfert CD, Bouchier C, Goldman GH, Bell-Pedersen D, Griffiths-Jones S, Doonan JH, J. Yu, Vienken K, Pain A, Freitag M, Selker EU, Archer DB, Penalva MA, Oakley BR, Momany M, Tanaka T, Kumagai T, Asai K, Machida M, Nierman WC, Denning DW, M. Caddick M, Hynes M, Paoletti M, Fischer R, Miller B, Dyer P, Sachs MS, Osmani SA, Birren BW. Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae. Nature. 2005;438(7071):1105-15.
-
(2005)
Nature
, vol.438
, Issue.7071
, pp. 1105-1115
-
-
Galagan, J.E.1
Calve, S.E.2
Cuomo, C.3
Ma, L.J.4
Wortman, J.R.5
Batzoglou, S.6
Lee, S.-I.7
Basturkmen, M.8
Spevak, C.9
Clutterbuck, J.10
Kapitonov, V.11
Jurka, J.12
Scazzocchio, C.13
Farman, M.14
Butler, J.15
Purcell, S.16
Harris, S.17
Braus, G.H.18
Draht, O.19
Busch, S.20
Enfert, C.D.21
Bouchier, C.22
Goldman, G.H.23
Bell-Pedersen, D.24
Griffiths-Jones, S.25
Doonan, J.H.26
Yu, J.27
Vienken, K.28
Pain, A.29
Freitag, M.30
Selker, E.U.31
Archer, D.B.32
Penalva, M.A.33
Oakley, B.R.34
Momany, M.35
Tanaka, T.36
Kumagai, T.37
Asai, K.38
Machida, M.39
Nierman, W.C.40
Denning, D.W.41
Caddick, M.42
Hynes, M.43
Paoletti, M.44
Fischer, R.45
Miller, B.46
Dyer, P.47
Sachs, M.S.48
Osmani, S.A.49
Birren, B.W.50
more..
-
31
-
-
34249682649
-
DNA sequence characterization and molecular evolution of MAT1 and MAT2 mating-type loci of the self-compatible ascomycete mold Neosartorya fischeri
-
Rydholm C, Dyer PS, Lutzoni F. DNA sequence characterization and molecular evolution of MAT1 and MAT2 mating-type loci of the self-compatible ascomycete mold Neosartorya fischeri. Eukaryotic Cell. 2007;6(5):868-74.
-
(2007)
Eukaryotic Cell
, vol.6
, Issue.5
, pp. 868-874
-
-
Rydholm, C.1
Dyer, P.S.2
Lutzoni, F.3
-
32
-
-
65449188232
-
Jalview version 2.0-a multiple sequence alignment editor and analysis workbench
-
Waterhouse AM, Procter JB, Martin DMA, Clamp M, Barton GJ. Jalview version 2.0-a multiple sequence alignment editor and analysis workbench. Bioninformatics. 2009;25(9):1189-91.
-
(2009)
Bioninformatics
, vol.25
, Issue.9
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.A.3
Clamp, M.4
Barton, G.J.5
-
33
-
-
84864612809
-
The Aspergillus nidulans MAPK Module AnSte11-Ste50-Ste7-Fus3 Controls Development and Secondary Metabolism
-
Bayram ö, Bayram öS, Ahmed YL, Maruyama J-i, Valerius O, Rizzoli SO, Ficner R, Irniger S, Braus GH. The Aspergillus nidulans MAPK Module AnSte11-Ste50-Ste7-Fus3 Controls Development and Secondary Metabolism. PLoS Genet. 2012;8(7):e1002816.
-
(2012)
PLoS Genet
, vol.8
, Issue.7
-
-
Bayram, Ö.1
Bayram, Ö.S.2
Ahmed, Y.L.3
Maruyama, J.-I.4
Valerius, O.5
Rizzoli, S.O.6
Ficner, R.7
Irniger, S.8
Braus, G.H.9
-
34
-
-
33644507452
-
Comparative genomics of the HOG-signalling system in fungi
-
Krantz M, Becit E, Hohmann S. Comparative genomics of the HOG-signalling system in fungi. Curr Genet. 2006;49:137-51.
-
(2006)
Curr Genet
, vol.49
, pp. 137-151
-
-
Krantz, M.1
Becit, E.2
Hohmann, S.3
-
35
-
-
0036275984
-
A third osmosensing branch in Saccharomyces cerevisiae requires the Msb2 protein and functions in parallel with the Sho1 branch
-
O'Rourke SM, Herskowitz I. A third osmosensing branch in Saccharomyces cerevisiae requires the Msb2 protein and functions in parallel with the Sho1 branch. Mol Cell Biol. 2002;22(13):4739-49.
-
(2002)
Mol Cell Biol
, vol.22
, Issue.13
, pp. 4739-4749
-
-
O'Rourke, S.M.1
Herskowitz, I.2
-
36
-
-
33845617675
-
Sensing the environment: lessons from fungi
-
Bahn Y-S, Xue CY, Idnurm A, Rutherford JC, Heitman J, Cardenas ME. Sensing the environment: lessons from fungi. Nat Rev Microbiol. 2007;5(1):57-69.
-
(2007)
Nat Rev Microbiol
, vol.5
, Issue.1
, pp. 57-69
-
-
Bahn, Y.-S.1
Xue, C.Y.2
Idnurm, A.3
Rutherford, J.C.4
Heitman, J.5
Cardenas, M.E.6
-
37
-
-
0032530170
-
The Hog1 MAPK prevents cross talk between the HOG and pheromone response MAPK pathways in Saccharomyces cerevisiae
-
O'Rourke SM, Herskowitz I. The Hog1 MAPK prevents cross talk between the HOG and pheromone response MAPK pathways in Saccharomyces cerevisiae. Genes Dev. 1998;12(18):2874-86.
-
(1998)
Genes Dev
, vol.12
, Issue.18
, pp. 2874-2886
-
-
O'Rourke, S.M.1
Herskowitz, I.2
-
38
-
-
0034213955
-
Phosphorylation of the MEKK Ste11p by the PAK-like kinase Ste20p is required for MAP kinase signaling in vivo
-
van Drogen F, O'Rourke SM, Stucke VM, Jaquenoud M, Neiman AM, Peter M. Phosphorylation of the MEKK Ste11p by the PAK-like kinase Ste20p is required for MAP kinase signaling in vivo. Curr Biol. 2000;10(11):630-9.
-
(2000)
Curr Biol
, vol.10
, Issue.11
, pp. 630-639
-
-
van Drogen, F.1
O'Rourke, S.M.2
Stucke, V.M.3
Jaquenoud, M.4
Neiman, A.M.5
Peter, M.6
-
39
-
-
0032960856
-
Kinase activity-dependent nuclear export opposes stress-induced nuclear accumulation and retention of Hog1 mitogen-activated protein kinase in the budding yeast Saccharomyces cerevisiae
-
Reiser V, Ruis H, Ammerer G. Kinase activity-dependent nuclear export opposes stress-induced nuclear accumulation and retention of Hog1 mitogen-activated protein kinase in the budding yeast Saccharomyces cerevisiae. Mol Biol Cell. 1999;10(4):1147-61.
-
(1999)
Mol Biol Cell
, vol.10
, Issue.4
, pp. 1147-1161
-
-
Reiser, V.1
Ruis, H.2
Ammerer, G.3
-
40
-
-
34247480528
-
The SskA and SrrA response regulators are implicated in oxidative stress responses of hyphae and asexual spores in the phosphorelay signaling network of Aspergillus nidulans
-
Hagiwara D, Asano Y, Marui J, Furukawa K, Kanamaru K, Kato M, Abe K, Kobayashi T, Yamashino T, Mizuno T. The SskA and SrrA response regulators are implicated in oxidative stress responses of hyphae and asexual spores in the phosphorelay signaling network of Aspergillus nidulans. Biosci Biotechnol Biochem. 2007;71(4):1003-14.
-
(2007)
Biosci Biotechnol Biochem
, vol.71
, Issue.4
, pp. 1003-1014
-
-
Hagiwara, D.1
Asano, Y.2
Marui, J.3
Furukawa, K.4
Kanamaru, K.5
Kato, M.6
Abe, K.7
Kobayashi, T.8
Yamashino, T.9
Mizuno, T.10
-
41
-
-
34748844485
-
Response regulators SrrA and SskA are central components of a phosphorelay system involved in stress signal transduction and asexual sporulation in Aspergillus nidulans
-
Vargas-Pérez I, Sánchez O, Kawasaki L, Georgellis D, Aguirre J. Response regulators SrrA and SskA are central components of a phosphorelay system involved in stress signal transduction and asexual sporulation in Aspergillus nidulans. Eukaryotic Cell. 2007;6(9):1570-83.
-
(2007)
Eukaryotic Cell
, vol.6
, Issue.9
, pp. 1570-1583
-
-
Vargas-Pérez, I.1
Sánchez, O.2
Kawasaki, L.3
Georgellis, D.4
Aguirre, J.5
-
42
-
-
19944374475
-
Aspergillus nidulans HOG pathway is activated only by two-component signalling pathway in response to osmotic stress
-
Furukawa K, Hoshi Y, Maeda T, Nakajima T, Abe K. Aspergillus nidulans HOG pathway is activated only by two-component signalling pathway in response to osmotic stress. Mol Microbiol. 2005;56(5):1246-61.
-
(2005)
Mol Microbiol
, vol.56
, Issue.5
, pp. 1246-1261
-
-
Furukawa, K.1
Hoshi, Y.2
Maeda, T.3
Nakajima, T.4
Abe, K.5
-
43
-
-
30544434099
-
Fungal secondary metabolism-from biochemistry to genomics
-
Keller NP, Turner G, Bennett JW. Fungal secondary metabolism-from biochemistry to genomics. Nat Rev Microbiol. 2005;3(12):937-47.
-
(2005)
Nat Rev Microbiol
, vol.3
, Issue.12
, pp. 937-947
-
-
Keller, N.P.1
Turner, G.2
Bennett, J.W.3
-
44
-
-
79959920872
-
de, Zakrzewski P, Fischbach MA, Weber T, Takano E, Breitling R. antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
-
Medema MH, Blin K, Cimermancic P, Jager V. de, Zakrzewski P, Fischbach MA, Weber T, Takano E, Breitling R. antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences. Nucleic Acids Res. 2011;39 suppl 2:W339-46.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W339-W346
-
-
Medema, M.H.1
Blin, K.2
Cimermancic, P.3
Jager, V.4
-
45
-
-
75549086594
-
InParanoid 7: new algorithms and tools for eukaryotic orthology analysis
-
Ostlund G, Schmitt T, Forslund K, Kostler T, Messina DN, Roopra S, Frings O, Sonnhammer ELL. InParanoid 7: new algorithms and tools for eukaryotic orthology analysis. Nucleic Acids Res. 2009;38:D196-203.
-
(2009)
Nucleic Acids Res
, vol.38
, pp. D196-D203
-
-
Ostlund, G.1
Schmitt, T.2
Forslund, K.3
Kostler, T.4
Messina, D.N.5
Roopra, S.6
Frings, O.7
Sonnhammer, E.L.L.8
-
46
-
-
85007539996
-
-
Accessed 5 May
-
http://www.fda.gov/Food/GuidanceRegulation/GuidanceDocuments RegulatoryInformation/ChemicalContaminantsMetalsNaturalToxinsPesticides/ucm109231.htm. Accessed 5 May.
-
-
-
-
47
-
-
0002522330
-
Extraction of total cellular DNA from plants, algae and fungi
-
Rogers SO, Bendich AJ. Extraction of total cellular DNA from plants, algae and fungi. Plant Mol Biol Manual. 1994;DI:1-8.
-
(1994)
Plant Mol Biol Manual
, vol.DI
, pp. 1-8
-
-
Rogers, S.O.1
Bendich, A.J.2
-
48
-
-
84860458836
-
The Genome of Ganderma lucidum Provide Insights intoTriterpense Biosynthesis and Wood Degradation
-
Liu DB, Gong J, Dai WK, Kang XC, Huang Z, Zhang HM, Liu W, Liu L, Ma JP, Xia ZL, Chen YX, Chen YW, Wang DP, Ni PX, Guo AY, Xiong XY. The Genome of Ganderma lucidum Provide Insights intoTriterpense Biosynthesis and Wood Degradation. PLoS One. 2012;7(5), e36146.
-
(2012)
PLoS One
, vol.7
, Issue.5
-
-
Liu, D.B.1
Gong, J.2
Dai, W.K.3
Kang, X.C.4
Huang, Z.5
Zhang, H.M.6
Liu, W.7
Liu, L.8
Ma, J.P.9
Xia, Z.L.10
Chen, Y.X.11
Chen, Y.W.12
Wang, D.P.13
Ni, P.X.14
Guo, A.Y.15
Xiong, X.Y.16
-
49
-
-
40049104732
-
SOAP: short oligonucleotide alignment program
-
Li R, Li Y, Kristiansen K, Wang J. SOAP: short oligonucleotide alignment program. Bioinformatics. 2008;24(5):713-4.
-
(2008)
Bioinformatics
, vol.24
, Issue.5
, pp. 713-714
-
-
Li, R.1
Li, Y.2
Kristiansen, K.3
Wang, J.4
-
50
-
-
75649124547
-
De novo assembly of human genomes with massively parallel short read sequencing
-
Li R, Zhu H, Ruan J, Qian W, Fang X, Shi Z, Li Y, Li S, Shan G, Kristiansen K, Li S, Yang H, Wang J, Wang J. De novo assembly of human genomes with massively parallel short read sequencing. Genome Res. 2009;20:265-72.
-
(2009)
Genome Res
, vol.20
, pp. 265-272
-
-
Li, R.1
Zhu, H.2
Ruan, J.3
Qian, W.4
Fang, X.5
Shi, Z.6
Li, Y.7
Li, S.8
Shan, G.9
Kristiansen, K.10
Li, S.11
Yang, H.12
Wang, J.13
Wang, J.14
-
51
-
-
23144444421
-
AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints
-
Stanke M, Morgenstern B. AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints. Nucleic Acids Res. 2005;33 suppl 2:W465-7.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. W465-W467
-
-
Stanke, M.1
Morgenstern, B.2
-
52
-
-
57149099395
-
Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
-
Ter-Hovhannisyan V, Lomsadze A, Chernoff YO, Borodovsky M. Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training. Genome Res. 2008;18(12):1979-90.
-
(2008)
Genome Res
, vol.18
, Issue.12
, pp. 1979-1990
-
-
Ter-Hovhannisyan, V.1
Lomsadze, A.2
Chernoff, Y.O.3
Borodovsky, M.4
-
54
-
-
33748653762
-
Automatic annotation of eukaryotic genes, pseudogenes and promoters
-
Solovyev V, Kosarev P, Seledsov I, Vorobyev D. Automatic annotation of eukaryotic genes, pseudogenes and promoters. Genome Biol. 2006;7 Suppl 1:1-12.
-
(2006)
Genome Biol
, vol.7
, pp. 1-12
-
-
Solovyev, V.1
Kosarev, P.2
Seledsov, I.3
Vorobyev, D.4
-
55
-
-
42949086676
-
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
-
Haas BJ, Salzberg SL, Zhu W, Pertea M, Allen JE, Orvis J. Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments. Genome Biol. 2008;9(1):R7.
-
(2008)
Genome Biol
, vol.9
, Issue.1
, pp. R7
-
-
Haas, B.J.1
Salzberg, S.L.2
Zhu, W.3
Pertea, M.4
Allen, J.E.5
Orvis, J.6
-
56
-
-
75849153303
-
The universal protein resource (UniProt) in 2010
-
UniProt Consortium. The universal protein resource (UniProt) in 2010. Nucleic Acids Res. 2010;38:D142-8.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. D142-D148
-
-
-
57
-
-
75549090213
-
KEGG for representation and analysis of molecular networks involving diseases and drugs
-
Kanehisa M, Goto S, Furumichi M, Tanabe M, Hirakawa M. KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res. 2010;38:D355-60.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. D355-D360
-
-
Kanehisa, M.1
Goto, S.2
Furumichi, M.3
Tanabe, M.4
Hirakawa, M.5
-
58
-
-
0042902833
-
The COG database: an updated version includes eukaryotes
-
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV. The COG database: an updated version includes eukaryotes. BMC Bioinformatics. 2003;4(1):1-14.
-
(2003)
BMC Bioinformatics
, vol.4
, Issue.1
, pp. 1-14
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
Koonin, E.V.6
-
59
-
-
84858077472
-
The Pfam protein families database
-
Punta M, Coggill PC, Eberhardt RY, Mistry J, Tate J, Boursnell C, Pang N, Forslund K, Ceric G, Clements J. The Pfam protein families database. Nucleic Acids Res. 2012;40(D1):D290-301.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.D1
, pp. D290-D301
-
-
Punta, M.1
Coggill, P.C.2
Eberhardt, R.Y.3
Mistry, J.4
Tate, J.5
Boursnell, C.6
Pang, N.7
Forslund, K.8
Ceric, G.9
Clements, J.10
-
60
-
-
79959931985
-
HMMER web server: interactive sequence similarity searching
-
Finn RD, Clements J, Eddy SR. HMMER web server: interactive sequence similarity searching. Nucleic Acids Res. 2011;39 Suppl 2:W29-37.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W29-W37
-
-
Finn, R.D.1
Clements, J.2
Eddy, S.R.3
-
61
-
-
45549089420
-
High-throughput functional annotation and data mining with the Blast2GO suite
-
Götz S, García-Gómez JM, Terol J, Williams TD, Nagaraj SH, Nueda MJ, Robles M, Talón M, Dopazo J, Conesa A. High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Res. 2008;36(10):3420-35.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.10
, pp. 3420-3435
-
-
Götz, S.1
García-Gómez, J.M.2
Terol, J.3
Williams, T.D.4
Nagaraj, S.H.5
Nueda, M.J.6
Robles, M.7
Talón, M.8
Dopazo, J.9
Conesa, A.10
-
62
-
-
0034069495
-
Gene Ontology: tool for the unification of biology
-
Ashburner M. A. Ball C, A. Blake J, Botstein D, Butler H, Cherry JM, P. Davis A, Dolinski K, S. Dwight S, T. Eppig J, A. Harris M, P. HilL D, Issel-Tarver L, Kasarskis A, Lewis S, C. Matese J, E. Richardson J, Ringwald M, M. Rubin G and Sherlock G. Gene Ontology: tool for the unification of biology. Nat Genet. 2000;25(1):25-9.
-
(2000)
Nat Genet
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.A.1
Ball, C.2
Blake, A.J.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, P.A.7
Dolinski, K.8
Dwight, S.S.9
Eppig, T.J.10
Harris, A.M.11
Hil, P.L.D.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, C.J.16
Richardson, E.J.17
Ringwald, M.18
Rubin, M.G.19
Sherlock, G.20
more..
-
63
-
-
84858602406
-
InterPro in 2011: new developments in the family and domain prediction database
-
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S, de Castro E, Coggill P, Corbett M, Das U, Daugherty L, Duquenne L, Finn RD, Fraser M, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, McMenamin C, Mi HY, Mutowo-Muellenet P, Mulder N, Natale D, Orengo C, Pesseat S, Punta M, Quinn AF, Rivoire C, Sangrador-Vegas A, Selengut JD, Sigrist CJA, Scheremetjew M, Tate J, Thimmajanarthanan M, Thomas PD, Wu CH, Yeats C, Yong SY. InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res. 2012; 40(D1):D306-12.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.D1
, pp. D306-D312
-
-
Hunter, S.1
Jones, P.2
Mitchell, A.3
Apweiler, R.4
Attwood, T.K.5
Bateman, A.6
Bernard, T.7
Binns, D.8
Bork, P.9
Burge, S.10
de Castro, E.11
Coggill, P.12
Corbett, M.13
Das, U.14
Daugherty, L.15
Duquenne, L.16
Finn, R.D.17
Fraser, M.18
Gough, J.19
Haft, D.20
Hulo, N.21
Kahn, D.22
Kelly, E.23
Letunic, I.24
Lonsdale, D.25
Lopez, R.26
Madera, M.27
Maslen, J.28
McAnulla, C.29
McDowall, J.30
McMenamin, C.31
Mi, H.Y.32
Mutowo-Muellenet, P.33
Mulder, N.34
Natale, D.35
Orengo, C.36
Pesseat, S.37
Punta, M.38
Quinn, A.F.39
Rivoire, C.40
Sangrador-Vegas, A.41
Selengut, J.D.42
Sigrist, C.J.A.43
Scheremetjew, M.44
Tate, J.45
Thimmajanarthanan, M.46
Thomas, P.D.47
Wu, C.H.48
Yeats, C.49
Yong, S.Y.50
more..
-
64
-
-
84891804220
-
MEROPS: the database of proteolytic enzymes, their substrates and inhibitors
-
Rawlings ND, Waller M, Barrett AJ, Bateman A. MEROPS: the database of proteolytic enzymes, their substrates and inhibitors. Nucleic Acids Res. 2014; 42(1):D503-9.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.1
, pp. D503-D509
-
-
Rawlings, N.D.1
Waller, M.2
Barrett, A.J.3
Bateman, A.4
-
65
-
-
84870856388
-
-
Accessed 5 May
-
Repbase database. [http://girinst.org/]. Accessed 5 May.
-
Repbase database
-
-
-
66
-
-
0141519279
-
OrthoMCL: identification of ortholog groups for eukaryotic genomes
-
Li L, Stoeckert CJ, Roos DS. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res. 2003;13(9):2178-89.
-
(2003)
Genome Res
, vol.13
, Issue.9
, pp. 2178-2189
-
-
Li, L.1
Stoeckert, C.J.2
Roos, D.S.3
-
67
-
-
33644787447
-
OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups
-
Chen F, Mackey AJ, Stoeckert CJ, Roos DS. OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups. Nucleic Acids Res. 2006;34 suppl 1:D363-8.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. D363-D368
-
-
Chen, F.1
Mackey, A.J.2
Stoeckert, C.J.3
Roos, D.S.4
-
68
-
-
84875619226
-
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
-
Katoh K, Standley DM. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 2013; 30(4):772-80.
-
(2013)
Mol Biol Evol
, vol.30
, Issue.4
, pp. 772-780
-
-
Katoh, K.1
Standley, D.M.2
-
69
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 2006; 22(21):2688-90.
-
(2006)
Bioinformatics
, vol.22
, Issue.21
, pp. 2688-2690
-
-
Stamatakis, A.1
-
70
-
-
18744382506
-
ProtTest: selection of best-fit models of protein evolution
-
Abascal F, Zardoya R, Posada D. ProtTest: selection of best-fit models of protein evolution. Bioinformatics. 2005;21(9):2104-5.
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
71
-
-
65449136284
-
Tophat: discovering splice junctions with RNA-Seq
-
Trapnell C, Pachter L, Salzberg SL. Tophat: discovering splice junctions with RNA-Seq. Bioinformatics. 2009;25(9):1105-11.
-
(2009)
Bioinformatics
, vol.25
, Issue.9
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
72
-
-
0035733108
-
The control of the false discovery rate in multiple testing under dependency
-
Benjamini Y, Yekutieli D. The control of the false discovery rate in multiple testing under dependency. Ann Stat. 2001;29(4):1165-88.
-
(2001)
Ann Stat
, vol.29
, Issue.4
, pp. 1165-1188
-
-
Benjamini, Y.1
Yekutieli, D.2
-
77
-
-
72149117498
-
Gliotoxin natural incidence and toxigenicity of Aspergillus fumigatus isolated from corn silage and ready dairy cattle feed
-
Pereyra CM, Alonso VA, Rosa CAR, Chiacchiera SM, Dalcero AM, Cavaglieri LR. Gliotoxin natural incidence and toxigenicity of Aspergillus fumigatus isolated from corn silage and ready dairy cattle feed. World Mycotoxin J. 2008;1(4):457-62.
-
(2008)
World Mycotoxin J
, vol.1
, Issue.4
, pp. 457-462
-
-
Pereyra, C.M.1
Alonso, V.A.2
Rosa, C.A.R.3
Chiacchiera, S.M.4
Dalcero, A.M.5
Cavaglieri, L.R.6
-
78
-
-
85007564524
-
Determination of Sterigmatocysin in Wheat by HPLC
-
Yuan J, Du J, Wang HF, Ju XR. Determination of Sterigmatocysin in Wheat by HPLC. Food Sci. 2011;32(12):174-7.
-
(2011)
Food Sci
, vol.32
, Issue.12
, pp. 174-177
-
-
Yuan, J.1
Du, J.2
Wang, H.F.3
Ju, X.R.4
-
79
-
-
24044447664
-
Automated generation of heuristics for biological sequence comparison
-
Slater GS, Birney E. Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics. 2005;6(1):31.
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.1
, pp. 31
-
-
Slater, G.S.1
Birney, E.2
|